CuGenDBv2

Gene ID	IVF0025121
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	PHD finger-like domain-containing protein 5B
Genome location	chr12:801214..805693
RNA-Seq Expression	IVF0025121
Synteny	IVF0025121
Gene Ontology terms	GO:0000398 - mRNA splicing, via spliceosome (biological process) GO:0005686 - U2 snRNP (cellular component) GO:0005689 - U12-type spliceosomal complex (cellular component) GO:0071011 - precatalytic spliceosome (cellular component) GO:0016853 - isomerase activity (molecular function)
InterPro domains	IPR005345 - PHF5-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAF1868896.1 hypothetical protein Lal_00048175 [Lupinus albus]

4.81e-81

100

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

NP_001077473.1 PHF5-like protein [Arabidopsis thaliana]

4.92e-81

99.09

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

NP_001148557.1 PHD finger-like domain-containing protein 5A [Zea mays]

4.92e-81

99.09

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCV+CDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

NP_001235659.1 PHD finger-like domain-containing protein 5A-like [Glycine max]

3.46e-81

100

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

XP_022679553.1 PHD finger-like domain-containing protein 5B isoform X1 [Setaria italica]

5.87e-81

100

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

TrEMBL top hits

e value

%identity

Alignment

A0A1S3VFD8 PHD finger-like domain-containing protein 5B

3.0e-62

100

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

A0A1U7WEQ8 PHD finger-like domain-containing protein 5B

3.0e-62

100

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

A0A1U8I119 PHD finger-like domain-containing protein 5B

3.0e-62

100

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

A0A6J1I5N2 PHD finger-like domain-containing protein 5B

3.0e-62

100

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

C5XAZ5 Uncharacterized protein

3.0e-62

100

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

SwissProt top hits

e value

%identity

Alignment

P0DI19 PHD finger-like domain-containing protein 5A

1.1e-64

99.09

Show/hide

Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

P83870 PHD finger-like domain-containing protein 5A

1.2e-60

91.82

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

P83871 PHD finger-like domain-containing protein 5A

1.2e-60

91.82

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

Q0WMV8 PHD finger-like domain-containing protein 5B

1.1e-64

99.09

Show/hide

Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

Q7RTV0 PHD finger-like domain-containing protein 5A

1.2e-60

91.82

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

Arabidopsis top hits

e value

%identity

Alignment

AT1G07170.1 PHF5-like protein

7.6e-66

99.09

Show/hide

Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

AT1G07170.2 PHF5-like protein

7.6e-66

99.09

Show/hide

Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

AT1G07170.3 PHF5-like protein

7.6e-66

99.09

Show/hide

Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

AT2G30000.1 PHF5-like protein

7.6e-66

99.09

Show/hide

Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCCAAGCATCATCCTGATTTGATAATGTGCAGAAAGCAGCCAGGAATTGCAATTGGCCGCCTATGTGAGAAGTGCGATGGGAAGTGTGTAATCTGTGATTCTTATGT
CCGACCCTGTACGCTTGTTCGTGTTTGTGACGAATGCAATTACGGGTCTTTCCAAGGCCGTTGTGTGATCTGTGGAGGAGTAGGAATTTCAGATGCTTACTACTGCAAAG
AGTGTACACAGCAGGAGAAAGATAGAGATGGATGCCCAAAGATTGTTAATTTAGGCAGTGCAAAAACAGATTTGTTCTATGAACGTAAGAAATATGGGTTCAAGAAACGA
TGA

mRNA sequence

Show/hide mRNA sequence

GAAAAACCCTAAACTCTTTCATCTGTGCTCAAAGCCCACTTCTTCTTCTTCCTCTTCTTCCTCTTCAGGACGTCTCCTCCTCCTTTTCAGCAGCTCAGCCTCGCCTCCGC
GGTCGCCGTCTACTTTCTTCTGTTCGTGCCGCCGGAGCCTCCCCTAGCGGTTTTTCACTGATTTTCTCACCCATTATTACTGGTTACAAATTTTACTGGAACTTGATAGA
TTGTTGCGGTTGCATAAGCCATGGCCAAGCATCATCCTGATTTGATAATGTGCAGAAAGCAGCCAGGAATTGCAATTGGCCGCCTATGTGAGAAGTGCGATGGGAAGTGT
GTAATCTGTGATTCTTATGTCCGACCCTGTACGCTTGTTCGTGTTTGTGACGAATGCAATTACGGGTCTTTCCAAGGCCGTTGTGTGATCTGTGGAGGAGTAGGAATTTC
AGATGCTTACTACTGCAAAGAGTGTACACAGCAGGAGAAAGATAGAGATGGATGCCCAAAGATTGTTAATTTAGGCAGTGCAAAAACAGATTTGTTCTATGAACGTAAGA
AATATGGGTTCAAGAAACGATGAAGCAAAAACACATTGAGTTTCCTTCCTAAGATGGATCTTACTGTAATATGATGAATTTCTGACATCTAATCTCAAAACTCTCTTAGA
CATGTATGTATATGCTGATGAGTCAGAATGAGAACAGTTGTTGGGGCTAAGGCAATTCATAAGAATTAAAACTTTATCAATTGTATTGTGTCTTTTGAGTACAACTGTGG
CAGACAGATTGAACCATCGACTTTTAAGATGGTAATTAGTATTTTATTCGTCGTCGATTATATTGGTGTTGAATGATTGATCTGCTTGGGTCGACAAGGAGGGAATCCAT
CAAAATTGAGGTTTGACGTCAATAAATCTGTCTTCAACTTGAACTAGTGATGATGCAGGAGAAGAGGCCCCTCCATCCTTAAAAGGAGGGCAAAGGAGTAACATGCTCAA
AGTCAACCAATATACAGTTAATTTTTTTTTGGAACCATAGTTAATGGGATGGACAGGTTTGAGATTTGTTAGTGTTGCTTTTTATGGCTGTTGGTAGTGGAAGTTCTTTG
AATGTTTTTTTATGCTCCATGTTCTTCACTTTTAGACTCAAAGAGAGAGGGCAATGGCTCTTTCCAGTTTCCATTAATGGTAATGGTAGGTTTTCACAATGTCATAACTC
ATAACGCAAC

Protein sequence

Show/hide protein sequence

MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR

IVF0025121 (gene) of Melon (IVF77) v1 genome