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IVF0025141 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0025141
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionCytoplasmic tRNA 2-thiolation protein 1
Genome locationchr12:10196330..10198874
RNA-Seq ExpressionIVF0025141
SyntenyIVF0025141
Gene Ontology termsGO:0002143 - tRNA wobble position uridine thiolation (biological process)
GO:0032447 - protein urmylation (biological process)
GO:0002144 - cytosolic tRNA wobble base thiouridylase complex (cellular component)
GO:0000049 - tRNA binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsIPR000541 - Cytoplasmic tRNA 2-thiolation protein 1
IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040949.1 protein starmaker [Cucumis melo var. makuwa]2.12e-4947.86Show/hide
Query:  MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKE-----------------------------------------------
        MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKE                                               
Subjt:  MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKE-----------------------------------------------

Query:  ---------------------------------------------------------------------------ALDRGAALLKVVKLATRHNAIDMAE
                                                                                   ALDRGAALLKVVKLATRHNAIDMAE
Subjt:  ---------------------------------------------------------------------------ALDRGAALLKVVKLATRHNAIDMAE

Query:  TVLLDILRGDIARLSRCTAISTDEDGPIPRCKPF
        TVLLDILRGDIARLSRCTAISTDEDGPIPRCKPF
Subjt:  TVLLDILRGDIARLSRCTAISTDEDGPIPRCKPF

KAG7020429.1 Cytoplasmic tRNA 2-thiolation protein 1 [Cucurbita argyrosperma subsp. argyrosperma]9.64e-3469.7Show/hide
Query:  VSEITRIIA--PNAPYSDGNMKEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIARLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFYILVS
        + EI ++I    N  +     ++ALDRGAALLKV KLAT HNA DMAETVLL+ILRGDIARLSRCTAI T EDGPIPRCKPFKYTYEK+IV+Y +I+VS
Subjt:  VSEITRIIA--PNAPYSDGNMKEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIARLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFYILVS

TYK20310.1 cytoplasmic tRNA 2-thiolation protein 1 isoform X2 [Cucumis melo var. makuwa]7.51e-5749.39Show/hide
Query:  MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKE-----------------------------------------------
        MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKE                                               
Subjt:  MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKE-----------------------------------------------

Query:  ---------------------------------------------------------------------------ALDRGAALLKVVKLATRHNAIDMAE
                                                                                   ALDRGAALLKVVKLATRHNAIDMAE
Subjt:  ---------------------------------------------------------------------------ALDRGAALLKVVKLATRHNAIDMAE

Query:  TVLLDILRGDIARLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY
        TVLLDILRGDIARLSRCTAISTDEDGPIPRCKPFKYTYEKKIV++ Y
Subjt:  TVLLDILRGDIARLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY

XP_030443958.1 cytoplasmic tRNA 2-thiolation protein 1-like [Syzygium oleosum]3.60e-3470.53Show/hide
Query:  VSEITRIIA--PNAPYSDGNMKEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIARLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY
        + EI +II    N  +     ++ALDRGAALLKV KLAT HNA D+AETVLL+ILRGDIARLSRCTAI+T EDGPIPRCKPFKYTYEK+IV+Y Y
Subjt:  VSEITRIIA--PNAPYSDGNMKEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIARLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY

XP_031737415.1 cytoplasmic tRNA 2-thiolation protein 1 isoform X2 [Cucumis sativus]5.63e-3387.5Show/hide
Query:  ALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIARLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY
        ALDRGAALLKV KLAT HNA DMAETVLL+ILRGDIARLSRCTAI T EDGPIPRCKPFKYTYEK+IV+Y Y
Subjt:  ALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIARLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY

TrEMBL top hitse value%identityAlignment
A0A059BW08 Cytoplasmic tRNA 2-thiolation protein 13.1e-2670.53Show/hide
Query:  VSEITRIIA--PNAPYSDGNMKEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIARLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY
        + EI +II    N  +     ++ALDRGAALLKV KLAT HNA D+AETVLL+ILRGDIARLSRCTAI+T EDGPIPRCKPFKYTYEK+IV+Y Y
Subjt:  VSEITRIIA--PNAPYSDGNMKEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIARLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY

A0A0A0LKF0 Cytoplasmic tRNA 2-thiolation protein 15.3e-2670.53Show/hide
Query:  VSEITRIIA--PNAPYSDGNMKEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIARLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY
        + EI ++I    N  +     ++ALDRGAALLKV KLAT HNA DMAETVLL+ILRGDIARLSRCTAI T EDGPIPRCKPFKYTYEK+IV+Y Y
Subjt:  VSEITRIIA--PNAPYSDGNMKEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIARLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY

A0A5A7TI13 Protein starmaker3.6e-3847.86Show/hide
Query:  MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKE-----------------------------------------------
        MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKE                                               
Subjt:  MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKE-----------------------------------------------

Query:  ---------------------------------------------------------------------------ALDRGAALLKVVKLATRHNAIDMAE
                                                                                   ALDRGAALLKVVKLATRHNAIDMAE
Subjt:  ---------------------------------------------------------------------------ALDRGAALLKVVKLATRHNAIDMAE

Query:  TVLLDILRGDIARLSRCTAISTDEDGPIPRCKPF
        TVLLDILRGDIARLSRCTAISTDEDGPIPRCKPF
Subjt:  TVLLDILRGDIARLSRCTAISTDEDGPIPRCKPF

A0A5D3DA09 Cytoplasmic tRNA 2-thiolation protein 1 isoform X22.5e-4449.39Show/hide
Query:  MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKE-----------------------------------------------
        MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKE                                               
Subjt:  MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKE-----------------------------------------------

Query:  ---------------------------------------------------------------------------ALDRGAALLKVVKLATRHNAIDMAE
                                                                                   ALDRGAALLKVVKLATRHNAIDMAE
Subjt:  ---------------------------------------------------------------------------ALDRGAALLKVVKLATRHNAIDMAE

Query:  TVLLDILRGDIARLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY
        TVLLDILRGDIARLSRCTAISTDEDGPIPRCKPFKYTYEKKIV++ Y
Subjt:  TVLLDILRGDIARLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY

A0A6J1KNU4 Cytoplasmic tRNA 2-thiolation protein 15.3e-2670.53Show/hide
Query:  VSEITRIIA--PNAPYSDGNMKEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIARLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY
        + EI ++I    N  +     ++ALDRGAALLKV KLAT HNA DMAETVLL+ILRGDIARLSRCTAI T EDGPIPRCKPFKYTYEK+IV+Y Y
Subjt:  VSEITRIIA--PNAPYSDGNMKEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIARLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY

SwissProt top hitse value%identityAlignment
O64862 Cytoplasmic tRNA 2-thiolation protein 19.3e-2867.37Show/hide
Query:  VSEITRIIA--PNAPYSDGNMKEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIARLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY
        + EI ++I    N  +     ++ALDRGAALLKV KL T HNA D+AETVLL+ILRGDIARLSRCT+I+T EDGPIPRCKPFKYTYEK+IV+Y Y
Subjt:  VSEITRIIA--PNAPYSDGNMKEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIARLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY

Q05AW7 Cytoplasmic tRNA 2-thiolation protein 17.7e-2266.22Show/hide
Query:  KEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIARLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY
        ++ALDRGA +L + K+ T HNA D+AETVL++ LRGDIARL RCTAI+T  +G IPRCKP KYTYEK+IV+Y Y
Subjt:  KEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIARLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY

Q5FW05 Cytoplasmic tRNA 2-thiolation protein 15.0e-2164.86Show/hide
Query:  KEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIARLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY
        ++ALDRGA +L V K+ T HNA D+AETVL++ LRGDIARL RCT+I+T  +G IPRCKP KY YEK+IV+Y Y
Subjt:  KEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIARLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY

Q6Z6G6 Cytoplasmic tRNA 2-thiolation protein 17.9e-2779.73Show/hide
Query:  KEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIARLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY
        ++ALDRGAALLKV K+ T HNA D+AETVLL+ILRGDIARLSRCT I+T EDGPIPRCKPFKYTYEK+IV+Y Y
Subjt:  KEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIARLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY

Q803X1 Cytoplasmic tRNA 2-thiolation protein 12.2e-2167.11Show/hide
Query:  KEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIARLSRCTAIST--DEDGPIPRCKPFKYTYEKKIVVYFY
        ++ALDRGA +L V K+ T HNA D+AETVL+++LRGDIARL RCTAIST  + DG IPRCKP KY YEK+IV+Y Y
Subjt:  KEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIARLSRCTAIST--DEDGPIPRCKPFKYTYEKKIVVYFY

Arabidopsis top hitse value%identityAlignment
AT1G76170.1 2-thiocytidine tRNA biosynthesis protein, TtcA1.9e-2866.32Show/hide
Query:  VSEITRIIA--PNAPYSDGNMKEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIARLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY
        + EI ++I    N  +     ++ALDRGAALLKV KL T HNA D+AETV+L+ILRGDIARLSRCT+I+T EDGPIPRCKPFKYTYEK+IV+Y Y
Subjt:  VSEITRIIA--PNAPYSDGNMKEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIARLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY

AT2G44270.1 repressor of lrx16.6e-2967.37Show/hide
Query:  VSEITRIIA--PNAPYSDGNMKEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIARLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY
        + EI ++I    N  +     ++ALDRGAALLKV KL T HNA D+AETVLL+ILRGDIARLSRCT+I+T EDGPIPRCKPFKYTYEK+IV+Y Y
Subjt:  VSEITRIIA--PNAPYSDGNMKEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIARLSRCTAISTDEDGPIPRCKPFKYTYEKKIVVYFY

AT2G44270.2 repressor of lrx12.9e-2465.12Show/hide
Query:  VSEITRIIA--PNAPYSDGNMKEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIARLSRCTAISTDEDGPIPRCKPFKYTY
        + EI ++I    N  +     ++ALDRGAALLKV KL T HNA D+AETVLL+ILRGDIARLSRCT+I+T EDGPIPRCKPF +TY
Subjt:  VSEITRIIA--PNAPYSDGNMKEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIARLSRCTAISTDEDGPIPRCKPFKYTY

AT4G31880.1 LOCATED IN: cytosol, chloroplast4.3e-1264Show/hide
Query:  ALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKE
        ALTP    LV  +L +HS+++VKVAVAAC+SEITRI AP+APY D  MKE
Subjt:  ALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKE

AT4G31880.2 LOCATED IN: cytosol4.3e-1264Show/hide
Query:  ALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKE
        ALTP    LV  +L +HS+++VKVAVAAC+SEITRI AP+APY D  MKE
Subjt:  ALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAATTGCGCTCACTCCATCACAGAATGCCTTGGTTTCTGATCGACTTCTTAGGCATTCAAATATTAATGTCAAAGTTGCAGTTGCAGCATGCGTTAGTGAAATAAC
TCGGATCATTGCACCTAATGCCCCTTACAGTGATGGAAATATGAAGGAGGCTCTTGATCGAGGTGCTGCATTGTTGAAAGTAGTCAAGCTTGCCACAAGGCACAATGCAA
TTGATATGGCTGAAACAGTTCTATTAGATATATTACGAGGTGATATTGCCAGATTGAGTAGATGTACTGCAATAAGTACCGATGAAGATGGACCAATTCCAAGATGCAAA
CCTTTCAAGTACACATATGAAAAGAAGATAGTAGTATATTTTTATATTTTAGTCTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGCTAATTGCGCTCACTCCATCACAGAATGCCTTGGTTTCTGATCGACTTCTTAGGCATTCAAATATTAATGTCAAAGTTGCAGTTGCAGCATGCGTTAGTGAAATAAC
TCGGATCATTGCACCTAATGCCCCTTACAGTGATGGAAATATGAAGGAGGCTCTTGATCGAGGTGCTGCATTGTTGAAAGTAGTCAAGCTTGCCACAAGGCACAATGCAA
TTGATATGGCTGAAACAGTTCTATTAGATATATTACGAGGTGATATTGCCAGATTGAGTAGATGTACTGCAATAAGTACCGATGAAGATGGACCAATTCCAAGATGCAAA
CCTTTCAAGTACACATATGAAAAGAAGATAGTAGTATATTTTTATATTTTAGTCTCATAG
Protein sequenceShow/hide protein sequence
MLIALTPSQNALVSDRLLRHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKEALDRGAALLKVVKLATRHNAIDMAETVLLDILRGDIARLSRCTAISTDEDGPIPRCK
PFKYTYEKKIVVYFYILVS