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IVF0025173 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0025173
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon gag protein
Genome locationchr10:16032935..16033525
RNA-Seq ExpressionIVF0025173
SyntenyIVF0025173
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026140.1 hypothetical protein E6C27_scaffold19G00910 [Cucumis melo var. makuwa]1.15e-4059.6Show/hide
Query:  SREDLHLHLLTCVVVERIFIFIFSHVLQSKGSSSSSSSSSSHMCCSQEDLHLHHLTCVAAGRIFTFIFSHALQLGGSSLHLFTCVAAEKTIIF--SHVLQ
        + ED  LHLL+CV VERI IFIFSHVLQ +GSSS SSS    MC           +         FIFSH LQ   SS +L TCVA E+  IF  +HVLQ
Subjt:  SREDLHLHLLTCVVVERIFIFIFSHVLQSKGSSSSSSSSSSHMCCSQEDLHLHHLTCVAAGRIFTFIFSHALQLGGSSLHLFTCVAAEKTIIF--SHVLQ

Query:  PKGPS-SSSSMCCSREDHHLHLQCVAAERTIIFIFNVLQPRGPSSSSSMFC
         +G S SSS MCC+REDHHLHLQCVAAERT+IFIF++L PRGPSSSS M C
Subjt:  PKGPS-SSSSMCCSREDHHLHLQCVAAERTIIFIFNVLQPRGPSSSSSMFC

KAA0033278.1 hypothetical protein E6C27_scaffold845G00800 [Cucumis melo var. makuwa]1.57e-4052.82Show/hide
Query:  SREDLHLHLLTCVVVERIFIFIFSHVLQSKGSSSSSSSSSSHMCCSQEDLHLH-HLTCVAAGRIFTFIFSHALQLGGSS-----LHLFTCVAAEKTIIFS
        SREDLH HL  CV VERIFIFIFS +LQ +GSS SSS     MCCSQ+D HLH HL CVAA +IF FIFSH  +L GSS     L    C      I   
Subjt:  SREDLHLHLLTCVVVERIFIFIFSHVLQSKGSSSSSSSSSSHMCCSQEDLHLH-HLTCVAAGRIFTFIFSHALQLGGSS-----LHLFTCVAAEKTIIFS

Query:  HVLQPKGPSSSSSMCCSREDHHLHLQCVAAERTIIFIFNVLQPRGPSSSSSMFCSREDHHHHVRCVAIERTII-IFDVLQPRGPTAARGPSSSSL
        H  Q +  SSSS + CSR+ H LHL C AAE  I+FIF+  Q R  SSSS M  SR+ H  H+ C A E  I+ IF   Q R       PSSSSL
Subjt:  HVLQPKGPSSSSSMCCSREDHHLHLQCVAAERTIIFIFNVLQPRGPSSSSSMFCSREDHHHHVRCVAIERTII-IFDVLQPRGPTAARGPSSSSL

KAA0039121.1 hypothetical protein E6C27_scaffold121G00100 [Cucumis melo var. makuwa]2.63e-5760.09Show/hide
Query:  MCCSREDLHLHLLTCVVVERIFIFIFSHVLQSKGSSSSSSSSSSHMCCSQEDLHLHHLTCVAAGRIFTFIFSHALQLGGSS--------------LHLFT
        MCCSRED HLHL TCV +ERI I IFSHVLQ +GSSS SS    HM CS++D HLH  TCVA  RI  FIFSH LQL GSS              LHL T
Subjt:  MCCSREDLHLHLLTCVVVERIFIFIFSHVLQSKGSSSSSSSSSSHMCCSQEDLHLHHLTCVAAGRIFTFIFSHALQLGGSS--------------LHLFT

Query:  CVAAEKTI--IFSHVLQPKGPSS-SSSMCCSREDHHLHL-QCVAAERTIIFIFN-VLQPRGPSSSSS-MFCSREDHHHHV-RCVAIERTII-IFD-VLQP
        C+A E+ I   FSHVLQ +G SS SS +CC +EDHHLHL  CVA +R IIFIF+ VLQ RG SSSSS M CSREDHH H+  CVA+E+ II IF  VLQ 
Subjt:  CVAAEKTI--IFSHVLQPKGPSS-SSSMCCSREDHHLHL-QCVAAERTIIFIFN-VLQPRGPSSSSS-MFCSREDHHHHV-RCVAIERTII-IFD-VLQP

Query:  RGPTAARGPSSSSLMWCC
             +RG SSSS   CC
Subjt:  RGPTAARGPSSSSLMWCC

KAA0047505.1 hypothetical protein E6C27_scaffold498G001320 [Cucumis melo var. makuwa]4.35e-4247.7Show/hide
Query:  CSREDLHLHLLTCVVVERIFIFIFSHVLQSKGSSSSSSSSSSHMCCSQE------------DLHLHHLTCVAAGRIFTFIFSHALQLGGSS---------
        C +  L + + T V    IFIFIF+HVLQ +GSSSSSS    H+CCS+E            D HLH  TCVA  RI  FIFSH LQ   SS         
Subjt:  CSREDLHLHLLTCVVVERIFIFIFSHVLQSKGSSSSSSSSSSHMCCSQE------------DLHLHHLTCVAAGRIFTFIFSHALQLGGSS---------

Query:  -----LHLFTCVAAEK----TIIFSHVLQPKGPSSSSSMCCSREDHHLHLQCVAAERTIIFIFNVLQPRGPSSSSSMFCSREDHHHHVRCV---------
             L+L TCVA EK      IFSH LQP+GP SS S   SREDHHLHLQ VAAER  IF  ++LQPRG SSSSSM CS+EDHH  ++C          
Subjt:  -----LHLFTCVAAEK----TIIFSHVLQPKGPSSSSSMCCSREDHHLHLQCVAAERTIIFIFNVLQPRGPSSSSSMFCSREDHHHHVRCV---------

Query:  -----AIERTII-IFDVLQPRGPTAARGPSSSSLMWCCR
               ER I+ IF+V Q +        SSSS MW  R
Subjt:  -----AIERTII-IFDVLQPRGPTAARGPSSSSLMWCCR

TYK02186.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.92e-4254.82Show/hide
Query:  ERIFIFIFSHVLQSKGSSSSSSSSSSHMCCSQEDLHLHHLTCVAAGRIFTFIFSHALQLGGSSLHLFTCVAAEKTIIFSHVLQPKG-PSSSSSMCCSR--
        +RI IFIFSHVLQ +GSSSSSS    H+CCS+ED HLH LTCVAA R   FIFSH LQ  GSS   F    + + +  +     KG PSSSS MCCS+  
Subjt:  ERIFIFIFSHVLQSKGSSSSSSSSSSHMCCSQEDLHLHHLTCVAAGRIFTFIFSHALQLGGSSLHLFTCVAAEKTIIFSHVLQPKG-PSSSSSMCCSR--

Query:  -------EDHHLHL-QCVAAERTIIFIFNVLQPRGP-SSSSSMFCSRED---HHHHVRCVAIERTII---IFD-VLQPRGPTAARGPSSSSLMWCCR
               EDHHLHL  C AA+R IIFIFN+LQ RG  SSSS ++CSRED   H H + CV+ E+ II   IF  VLQPRG +++   SSSS M C R
Subjt:  -------EDHHLHL-QCVAAERTIIFIFNVLQPRGP-SSSSSMFCSRED---HHHHVRCVAIERTII---IFD-VLQPRGPTAARGPSSSSLMWCCR

TrEMBL top hitse value%identityAlignment
A0A5A7SRV7 Uncharacterized protein1.4e-3350.48Show/hide
Query:  MCC----------SREDLHLHLLTCVVVERIFIFIFSHVLQSKGSSSSSSSSSSHMCCSQEDLHLH-HLTCVAAGRIFTFIFSHALQLGG-----SSLHL
        MCC          SRED  LH L CV VERIFIFIFS +LQ +GSS SSS     MCCSQ+D HLH HL CVAA +IF FIFSH  +L G     SSL  
Subjt:  MCC----------SREDLHLHLLTCVVVERIFIFIFSHVLQSKGSSSSSSSSSSHMCCSQEDLHLH-HLTCVAAGRIFTFIFSHALQLGG-----SSLHL

Query:  FTCVAAEKTIIFSHVLQPKGPSSSSSMCCSREDHHLHLQCVAAERTIIFIFNVLQPRGPSSSSSMFCSREDHHHHVRCVAIERTII-IFDVLQPRGPTAA
          C      I   H  Q +  SSSS + CSR+ H LHL C AAE  I+FIF+  Q R  SSSS M  SR+ H  H+ C A E  I+ IF   Q R     
Subjt:  FTCVAAEKTIIFSHVLQPKGPSSSSSMCCSREDHHLHLQCVAAERTIIFIFNVLQPRGPSSSSSMFCSREDHHHHVRCVAIERTII-IFDVLQPRGPTAA

Query:  RGPSSSSL
          PSSSSL
Subjt:  RGPSSSSL

A0A5A7TBX4 Uncharacterized protein4.0e-4959.17Show/hide
Query:  MCCSREDLHLHLLTCVVVERIFIFIFSHVLQSKGSSSSSSSSSSHMCCSQEDLHLHHLTCVAAGRIFTFIFSHALQLGGSS--------------LHLFT
        MCCSRED HLHL TCV +ERI I IFSHVLQ +G    SSS SSHM CS++D HLH  TCVA  RI  FIFSH LQL GSS              LHL T
Subjt:  MCCSREDLHLHLLTCVVVERIFIFIFSHVLQSKGSSSSSSSSSSHMCCSQEDLHLHHLTCVAAGRIFTFIFSHALQLGGSS--------------LHLFT

Query:  CVAAEKTI--IFSHVLQPKGPSS-SSSMCCSREDHHLH-LQCVAAERTIIFIF-NVLQPRGPSSSSS-MFCSREDHH-HHVRCVAIERTIIIF--DVLQP
        C+A E+ I   FSHVLQ +G SS SS +CC +EDHHLH L CVA +R IIFIF +VLQ RG SSSSS M CSREDHH H + CVA+E+ II     VLQ 
Subjt:  CVAAEKTI--IFSHVLQPKGPSS-SSSMCCSREDHHLH-LQCVAAERTIIFIF-NVLQPRGPSSSSS-MFCSREDHH-HHVRCVAIERTIIIF--DVLQP

Query:  RGPTAARGPSSSSLMWCC
             +RG SSSS   CC
Subjt:  RGPTAARGPSSSSLMWCC

A0A5A7U1J1 Uncharacterized protein2.2e-3956.63Show/hide
Query:  REDLHLHLLTCVVVERIFIFIFSHVLQSKGSSSSSSSSSSHMCCSQEDLHLHHLTCVAAGR--IFTFIFSHALQLGG--SSL---------HL-FTCVAA
        RED HLHL TCV VERI IFIFSH+LQS+     SS SSS+MC SQE  HL+ LTCVA  +  IF FIFSH LQ  G  SSL         HL    VAA
Subjt:  REDLHLHLLTCVVVERIFIFIFSHVLQSKGSSSSSSSSSSHMCCSQEDLHLHHLTCVAAGR--IFTFIFSHALQLGG--SSL---------HL-FTCVAA

Query:  EKTIIFSHVLQPKGPSSSSSMCCSREDHHLHLQCV--------------AAERTIIFIFNVLQPRGPSSSSSMFCSREDHHHHVRCVAIERTIIIF
        E+  IF H+LQP+G SSSSSMCCS+EDHHL LQC                 ER I+FIFNV Q +  SSSSSM+ SR D H H++C A E TIIIF
Subjt:  EKTIIFSHVLQPKGPSSSSSMCCSREDHHLHLQCV--------------AAERTIIFIFNVLQPRGPSSSSSMFCSREDHHHHVRCVAIERTIIIF

A0A5D3BVC5 Retrotransposon gag protein3.5e-3753.81Show/hide
Query:  ERIFIFIFSHVLQSKGSSSSSSSSSSHMCCSQEDLHLHHLTCVAAGRIFTFIFSHALQLGGSSLHLF-TCVAAEKTIIFSHVLQPKGPSSSSSMCC----
        +RI IFIFSHVLQ +G    SSSSSSH+CCS+ED HLH LTCVAA R   FIFSH LQ  GSS   F  C + E   +         PSSSS MCC    
Subjt:  ERIFIFIFSHVLQSKGSSSSSSSSSSHMCCSQEDLHLHHLTCVAAGRIFTFIFSHALQLGGSSLHLF-TCVAAEKTIIFSHVLQPKGPSSSSSMCC----

Query:  -----SREDHHLH-LQCVAAERTIIFIFNVLQPRGP-SSSSSMFCSRED---HHHHVRCVAIERTIIIF----DVLQPRGPTAARGPSSSSLMWCCR
             S+EDHHLH L C AA+R IIFIFN+LQ RG  SSSS ++CSRED   H H + CV+ E+ II       VLQPRG +++   SSSS M C R
Subjt:  -----SREDHHLH-LQCVAAERTIIFIFNVLQPRGP-SSSSSMFCSRED---HHHHVRCVAIERTIIIF----DVLQPRGPTAARGPSSSSLMWCCR

A0A5D3CJK6 Uncharacterized protein6.8e-3360.4Show/hide
Query:  EDLHLHLLTCVVVERIFIFIFSHVLQSKGSSSSSSSSSSHMCCSQEDLHLHHLTCVAAGRIFTFIFSHALQLGGSSLHLFTCVAAEK--TIIFSHVLQPK
        ED  LHLL+CV VERI IFIFSHVLQ +GSSS SSS    MC           +         FIFSH LQ   SS +L TCVA E+    IF+HVLQ +
Subjt:  EDLHLHLLTCVVVERIFIFIFSHVLQSKGSSSSSSSSSSHMCCSQEDLHLHHLTCVAAGRIFTFIFSHALQLGGSSLHLFTCVAAEK--TIIFSHVLQPK

Query:  GPS-SSSSMCCSREDHHLHLQCVAAERTIIFIFNVLQPRGPSSSSSMFC
        G S SSS MCC+REDHHLHLQCVAAERT+IFIF++L PRGPSSSS M C
Subjt:  GPS-SSSSMCCSREDHHLHLQCVAAERTIIFIFNVLQPRGPSSSSSMFC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTGCAGTCGAGAGGATCTTCATCTTCATCTTCTCACATGTGTTGTAGTCGAAAGAATCTTCATCTTCATCTTCTCACATGTGTTGCAGTCGAAAGGATCTTCATC
TTCATCTTCATCTTCATCTTCTCACATGTGTTGCAGTCAAGAGGATCTTCATCTTCATCATCTCACATGTGTCGCAGCCGGGAGAATCTTCACCTTCATCTTCTCACATG
CGTTGCAGTTGGGAGGATCTTCACTTCATCTTTTCACATGTGTTGCAGCCGAGAAGACCATCATCTTCTCACATGTGTTACAGCCAAAAGGACCATCATCTTCATCTTCA
ATGTGTTGCAGCCGAGAGGACCATCATCTTCATCTTCAATGTGTTGCAGCCGAGAGGACCATCATCTTCATCTTCAATGTGTTACAGCCGAGAGGACCATCATCATCATC
TTCGATGTTTTGTAGCCGAGAAGACCATCATCATCATGTTCGATGTGTTGCAATCGAGAGGACCATCATCATCTTTGATGTGTTACAGCCGAGAGGACCAACTGCTGCAA
GAGGACCATCATCATCATCTTTAATGTGGTGCTGTCGATAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTTGCAGTCGAGAGGATCTTCATCTTCATCTTCTCACATGTGTTGTAGTCGAAAGAATCTTCATCTTCATCTTCTCACATGTGTTGCAGTCGAAAGGATCTTCATC
TTCATCTTCATCTTCATCTTCTCACATGTGTTGCAGTCAAGAGGATCTTCATCTTCATCATCTCACATGTGTCGCAGCCGGGAGAATCTTCACCTTCATCTTCTCACATG
CGTTGCAGTTGGGAGGATCTTCACTTCATCTTTTCACATGTGTTGCAGCCGAGAAGACCATCATCTTCTCACATGTGTTACAGCCAAAAGGACCATCATCTTCATCTTCA
ATGTGTTGCAGCCGAGAGGACCATCATCTTCATCTTCAATGTGTTGCAGCCGAGAGGACCATCATCTTCATCTTCAATGTGTTACAGCCGAGAGGACCATCATCATCATC
TTCGATGTTTTGTAGCCGAGAAGACCATCATCATCATGTTCGATGTGTTGCAATCGAGAGGACCATCATCATCTTTGATGTGTTACAGCCGAGAGGACCAACTGCTGCAA
GAGGACCATCATCATCATCTTTAATGTGGTGCTGTCGATAG
Protein sequenceShow/hide protein sequence
MCCSREDLHLHLLTCVVVERIFIFIFSHVLQSKGSSSSSSSSSSHMCCSQEDLHLHHLTCVAAGRIFTFIFSHALQLGGSSLHLFTCVAAEKTIIFSHVLQPKGPSSSSS
MCCSREDHHLHLQCVAAERTIIFIFNVLQPRGPSSSSSMFCSREDHHHHVRCVAIERTIIIFDVLQPRGPTAARGPSSSSLMWCCR