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IVF0025200 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0025200
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr08:27268654..27268908
RNA-Seq ExpressionIVF0025200
SyntenyIVF0025200
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038365.1 gag/pol protein [Cucumis melo var. makuwa]4.41e-4385.71Show/hide
Query:  MGKGKEVETNVGTTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYLTEKKADKEAQRN
        MGKGKEVE N  TTEKELVGGSSSKT+VGTLNMKKKR  KTP NSEGKKVAKGKCYHCNE+GHWLRNC KYL EKKA+KEAQ N
Subjt:  MGKGKEVETNVGTTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYLTEKKADKEAQRN

KAA0047525.1 gag/pol protein [Cucumis melo var. makuwa]2.56e-4486.9Show/hide
Query:  MGKGKEVETNVGTTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYLTEKKADKEAQRN
        +GKGKEVE NV TTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNS+GKKVAK KCYHCNED HWLRNCPKYL +KKA+KEA+ N
Subjt:  MGKGKEVETNVGTTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYLTEKKADKEAQRN

KAA0050332.1 gag/pol protein [Cucumis melo var. makuwa]4.24e-4384.52Show/hide
Query:  MGKGKEVETNVGTTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYLTEKKADKEAQRN
        MGKGKEVE NV T EKELVGGSSSKTRVGTLN+KKK+KGKTPKNS+ KKVAKGKCY CNEDGHWLRNC KYLT+KK +KEAQ N
Subjt:  MGKGKEVETNVGTTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYLTEKKADKEAQRN

KAA0051354.1 gag/pol protein [Cucumis melo var. makuwa]3.95e-4488.1Show/hide
Query:  MGKGKEVETNVGTTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYLTEKKADKEAQRN
        MGKGKEVE N  TTEKELVGGSSSKTRVGTLNMKKKRKG TPKNSEGKKVAKGKC HCNED HWLRNCPKYL EKKA+K AQ N
Subjt:  MGKGKEVETNVGTTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYLTEKKADKEAQRN

TYK04285.1 gag/pol protein [Cucumis melo var. makuwa]1.52e-52100Show/hide
Query:  MGKGKEVETNVGTTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYLTEKKADKEAQRN
        MGKGKEVETNVGTTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYLTEKKADKEAQRN
Subjt:  MGKGKEVETNVGTTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYLTEKKADKEAQRN

TrEMBL top hitse value%identityAlignment
A0A5A7U1L7 Gag/pol protein2.5e-3286.9Show/hide
Query:  MGKGKEVETNVGTTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYLTEKKADKEAQRN
        +GKGKEVE NV TTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNS+GKKVAK KCYHCNED HWLRNCPKYL +KKA+KEA+ N
Subjt:  MGKGKEVETNVGTTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYLTEKKADKEAQRN

A0A5A7U7R6 Gag/pol protein5.5e-3288.1Show/hide
Query:  MGKGKEVETNVGTTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYLTEKKADKEAQRN
        MGKGKEVE N  TTEKELVGGSSSKTRVGTLNMKKKRKG TPKNSEGKKVAKGKC HCNED HWLRNCPKYL EKKA+K AQ N
Subjt:  MGKGKEVETNVGTTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYLTEKKADKEAQRN

A0A5D3BYQ2 Gag/pol protein3.6e-39100Show/hide
Query:  MGKGKEVETNVGTTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYLTEKKADKEAQRN
        MGKGKEVETNVGTTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYLTEKKADKEAQRN
Subjt:  MGKGKEVETNVGTTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYLTEKKADKEAQRN

A0A5D3CUK8 Gag/pol protein1.3e-3392.5Show/hide
Query:  GKGKEVETNVGTTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYLTEKKADKEA
        GKGKEVETNV TTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNS+GKKVAK KCYHCNEDGHWLRNCPKYL EKKA+K+A
Subjt:  GKGKEVETNVGTTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYLTEKKADKEA

A0A5D3DTG1 Gag/pol protein1.6e-3184.52Show/hide
Query:  MGKGKEVETNVGTTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYLTEKKADKEAQRN
        MGKGKEVE NV TT+KEL+GGSS KTRV TLNMKKKRKG TPKNSEGKKVAKGKCY+CNEDGHWL+NC KYL EKKA+KE QRN
Subjt:  MGKGKEVETNVGTTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYLTEKKADKEAQRN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAAGGGGAAGGAAGTGGAAACAAATGTTGGTACCACAGAGAAAGAGTTAGTGGGAGGATCATCCTCTAAGACTAGAGTTGGAACTTTAAATATGAAGAAGAAGAG
AAAGGGGAAGACTCCCAAGAATAGTGAGGGAAAGAAAGTTGCTAAAGGTAAATGTTACCATTGCAATGAGGATGGGCATTGGTTGAGAAATTGCCCGAAGTACCTTACTG
AGAAGAAAGCTGATAAGGAAGCACAACGAAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTAAGGGGAAGGAAGTGGAAACAAATGTTGGTACCACAGAGAAAGAGTTAGTGGGAGGATCATCCTCTAAGACTAGAGTTGGAACTTTAAATATGAAGAAGAAGAG
AAAGGGGAAGACTCCCAAGAATAGTGAGGGAAAGAAAGTTGCTAAAGGTAAATGTTACCATTGCAATGAGGATGGGCATTGGTTGAGAAATTGCCCGAAGTACCTTACTG
AGAAGAAAGCTGATAAGGAAGCACAACGAAACTAG
Protein sequenceShow/hide protein sequence
MGKGKEVETNVGTTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYLTEKKADKEAQRN