CuGenDBv2

Gene ID	IVF0025205
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	DNA/RNA polymerases superfamily protein
Genome location	chr07:7533018..7533338
RNA-Seq Expression	IVF0025205
Synteny	IVF0025205
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR041588 - Integrase zinc-binding domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0055470.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

1.09e-55

94.34

Show/hide

Query:  MTAESSWSLLAQFQVRSPLVAEIVGRQPEDSNLQKMLAKAKQGPEAEFELRMDGAIVKQGRLCVPNISELKVAILEEAHNSAYAMHPGSTKMYRTLKKTY
        MTAESS SLLAQFQVRS LVAEIVGRQPEDSNLQKMLAKAKQGPEAEF+LR DGAIVKQGRLCVPNISELK AILEEAHNSAYAMHPGSTKMYRTLKKTY
Subjt:  MTAESSWSLLAQFQVRSPLVAEIVGRQPEDSNLQKMLAKAKQGPEAEFELRMDGAIVKQGRLCVPNISELKVAILEEAHNSAYAMHPGSTKMYRTLKKTY

Query:  CWPGMK
         WPGMK
Subjt:  CWPGMK

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

1.33e-61

100

Show/hide

Query:  MTAESSWSLLAQFQVRSPLVAEIVGRQPEDSNLQKMLAKAKQGPEAEFELRMDGAIVKQGRLCVPNISELKVAILEEAHNSAYAMHPGSTKMYRTLKKTY
        MTAESSWSLLAQFQVRSPLVAEIVGRQPEDSNLQKMLAKAKQGPEAEFELRMDGAIVKQGRLCVPNISELKVAILEEAHNSAYAMHPGSTKMYRTLKKTY
Subjt:  MTAESSWSLLAQFQVRSPLVAEIVGRQPEDSNLQKMLAKAKQGPEAEFELRMDGAIVKQGRLCVPNISELKVAILEEAHNSAYAMHPGSTKMYRTLKKTY

Query:  CWP
        CWP
Subjt:  CWP

TYK00847.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

2.38e-53

90.57

Show/hide

Query:  MTAESSWSLLAQFQVRSPLVAEIVGRQPEDSNLQKMLAKAKQGPEAEFELRMDGAIVKQGRLCVPNISELKVAILEEAHNSAYAMHPGSTKMYRTLKKTY
        MTAESS SLLAQFQVRS LVAEIVGRQPEDSNLQ+MLAKAKQGPEAEFELRMDGAIVKQGRLC+ NISELK AILEEAHNSAY MHP STKMYRTLK TY
Subjt:  MTAESSWSLLAQFQVRSPLVAEIVGRQPEDSNLQKMLAKAKQGPEAEFELRMDGAIVKQGRLCVPNISELKVAILEEAHNSAYAMHPGSTKMYRTLKKTY

Query:  CWPGMK
         WPGMK
Subjt:  CWPGMK

TYK05031.1 reverse transcriptase [Cucumis melo var. makuwa]

2.41e-53

91.51

Show/hide

Query:  MTAESSWSLLAQFQVRSPLVAEIVGRQPEDSNLQKMLAKAKQGPEAEFELRMDGAIVKQGRLCVPNISELKVAILEEAHNSAYAMHPGSTKMYRTLKKTY
        MTAESS SLLAQFQVRS LVAEIVGRQPEDSNLQKMLAKAKQGPEAEFELR +GAIVK GRLCVPNISELK AILEEAHNSAYAMHPGSTKMYRTLKK Y
Subjt:  MTAESSWSLLAQFQVRSPLVAEIVGRQPEDSNLQKMLAKAKQGPEAEFELRMDGAIVKQGRLCVPNISELKVAILEEAHNSAYAMHPGSTKMYRTLKKTY

Query:  CWPGMK
         W GMK
Subjt:  CWPGMK

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

1.10e-55

94.34

Show/hide

Query:  MTAESSWSLLAQFQVRSPLVAEIVGRQPEDSNLQKMLAKAKQGPEAEFELRMDGAIVKQGRLCVPNISELKVAILEEAHNSAYAMHPGSTKMYRTLKKTY
        MTAESS SLLAQFQVRS LVAEIVGRQPEDSNLQKMLAKAKQGPEAEF+LR DGAIVKQGRLCVPNISELK AILEEAHNSAYAMHPGSTKMYRTLKKTY
Subjt:  MTAESSWSLLAQFQVRSPLVAEIVGRQPEDSNLQKMLAKAKQGPEAEFELRMDGAIVKQGRLCVPNISELKVAILEEAHNSAYAMHPGSTKMYRTLKKTY

Query:  CWPGMK
         WPGMK
Subjt:  CWPGMK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UJV1 DNA/RNA polymerases superfamily protein

5.9e-47

94.34

Show/hide

Query:  MTAESSWSLLAQFQVRSPLVAEIVGRQPEDSNLQKMLAKAKQGPEAEFELRMDGAIVKQGRLCVPNISELKVAILEEAHNSAYAMHPGSTKMYRTLKKTY
        MTAESS SLLAQFQVRS LVAEIVGRQPEDSNLQKMLAKAKQGPEAEF+LR DGAIVKQGRLCVPNISELK AILEEAHNSAYAMHPGSTKMYRTLKKTY
Subjt:  MTAESSWSLLAQFQVRSPLVAEIVGRQPEDSNLQKMLAKAKQGPEAEFELRMDGAIVKQGRLCVPNISELKVAILEEAHNSAYAMHPGSTKMYRTLKKTY

Query:  CWPGMK
         WPGMK
Subjt:  CWPGMK

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein

1.1e-50

100

Show/hide

Query:  MTAESSWSLLAQFQVRSPLVAEIVGRQPEDSNLQKMLAKAKQGPEAEFELRMDGAIVKQGRLCVPNISELKVAILEEAHNSAYAMHPGSTKMYRTLKKTY
        MTAESSWSLLAQFQVRSPLVAEIVGRQPEDSNLQKMLAKAKQGPEAEFELRMDGAIVKQGRLCVPNISELKVAILEEAHNSAYAMHPGSTKMYRTLKKTY
Subjt:  MTAESSWSLLAQFQVRSPLVAEIVGRQPEDSNLQKMLAKAKQGPEAEFELRMDGAIVKQGRLCVPNISELKVAILEEAHNSAYAMHPGSTKMYRTLKKTY

Query:  CWP
        CWP
Subjt:  CWP

A0A5D3BNL5 DNA/RNA polymerases superfamily protein

2.1e-44

90.57

Show/hide

Query:  MTAESSWSLLAQFQVRSPLVAEIVGRQPEDSNLQKMLAKAKQGPEAEFELRMDGAIVKQGRLCVPNISELKVAILEEAHNSAYAMHPGSTKMYRTLKKTY
        MTAESS SLLAQFQVRS LVAEIVGRQPEDSNLQ+MLAKAKQGPEAEFELRMDGAIVKQGRLC+ NISELK AILEEAHNSAY MHP STKMYRTLK TY
Subjt:  MTAESSWSLLAQFQVRSPLVAEIVGRQPEDSNLQKMLAKAKQGPEAEFELRMDGAIVKQGRLCVPNISELKVAILEEAHNSAYAMHPGSTKMYRTLKKTY

Query:  CWPGMK
         WPGMK
Subjt:  CWPGMK

A0A5D3BZC5 Reverse transcriptase

1.2e-44

91.51

Show/hide

Query:  MTAESSWSLLAQFQVRSPLVAEIVGRQPEDSNLQKMLAKAKQGPEAEFELRMDGAIVKQGRLCVPNISELKVAILEEAHNSAYAMHPGSTKMYRTLKKTY
        MTAESS SLLAQFQVRS LVAEIVGRQPEDSNLQKMLAKAKQGPEAEFELR +GAIVK GRLCVPNISELK AILEEAHNSAYAMHPGSTKMYRTLKK Y
Subjt:  MTAESSWSLLAQFQVRSPLVAEIVGRQPEDSNLQKMLAKAKQGPEAEFELRMDGAIVKQGRLCVPNISELKVAILEEAHNSAYAMHPGSTKMYRTLKKTY

Query:  CWPGMK
         W GMK
Subjt:  CWPGMK

A0A5D3CCC7 DNA/RNA polymerases superfamily protein

5.9e-47

94.34

Show/hide

Query:  MTAESSWSLLAQFQVRSPLVAEIVGRQPEDSNLQKMLAKAKQGPEAEFELRMDGAIVKQGRLCVPNISELKVAILEEAHNSAYAMHPGSTKMYRTLKKTY
        MTAESS SLLAQFQVRS LVAEIVGRQPEDSNLQKMLAKAKQGPEAEF+LR DGAIVKQGRLCVPNISELK AILEEAHNSAYAMHPGSTKMYRTLKKTY
Subjt:  MTAESSWSLLAQFQVRSPLVAEIVGRQPEDSNLQKMLAKAKQGPEAEFELRMDGAIVKQGRLCVPNISELKVAILEEAHNSAYAMHPGSTKMYRTLKKTY

Query:  CWPGMK
         WPGMK
Subjt:  CWPGMK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGACTGCAGAAAGCTCATGGAGTCTTTTAGCTCAATTTCAGGTTAGGTCTCCCTTAGTAGCAGAGATTGTAGGCAGACAACCAGAGGATAGTAATTTGCAGAAGATGCT
TGCAAAGGCCAAGCAAGGCCCAGAGGCAGAATTTGAGTTGAGAATGGATGGAGCCATAGTTAAGCAAGGAAGATTATGCGTTCCGAATATTAGTGAGCTTAAGGTTGCTA
TACTAGAAGAAGCTCACAATTCAGCTTACGCTATGCATCCAGGAAGCACCAAGATGTATAGAACTCTGAAGAAGACTTATTGTTGGCCTGGTATGAAGTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MTAESSWSLLAQFQVRSPLVAEIVGRQPEDSNLQKMLAKAKQGPEAEFELRMDGAIVKQGRLCVPNISELKVAILEEAHNSAYAMHPGSTKMYRTLKKTYCWPGMK

IVF0025205 (gene) of Melon (IVF77) v1 genome