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IVF0025212 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0025212
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description50S ribosomal protein L28
Genome locationtig00000135:847933..848847
RNA-Seq ExpressionIVF0025212
SyntenyIVF0025212
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001383 - Ribosomal protein L28
IPR026569 - Ribosomal protein L28/L24
IPR034704 - L28p-like
IPR037147 - Ribosomal protein L28/L24 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134049.1 50S ribosomal protein L28, chloroplastic [Cucumis sativus]2.39e-8994Show/hide
Query:  MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPISPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKL
        MAASVVFGFTPAAT +GVM TSSTKLHFRTKPNSDLGFL SQLSGI+ISSNHSLISP+ IS APLRPSLQP+ARRICPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPISPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_008438484.1 PREDICTED: 50S ribosomal protein L28, chloroplastic [Cucumis melo]2.70e-95100Show/hide
Query:  MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPISPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKL
        MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPISPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPISPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_022979375.1 50S ribosomal protein L28, chloroplastic [Cucurbita maxima]1.62e-8289.33Show/hide
Query:  MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPISPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKL
        MA S V GFTP ++S GVMA SS+KLHFRTKPN +LGFL+SQLSGIKISSNHSLISPSPIS APLRP+LQP+ARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPISPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_023526300.1 50S ribosomal protein L28, chloroplastic [Cucurbita pepo subsp. pepo]1.09e-8088Show/hide
Query:  MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPISPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKL
        MA S V GFTP  +S GVMA SS+KLHFRTKPN +LGFL+SQLSGIKISSNHSLIS SPIS APLRP+LQP+ARR+CPFTGKKAN+KNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPISPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_038885053.1 50S ribosomal protein L28, chloroplastic [Benincasa hispida]1.14e-8290.67Show/hide
Query:  MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPISPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKL
        MAA VV GFTPA TS+GVMA SSTKL F TKPNS+LGFL SQL+GIKISSNHSLISPSPIS APLRP+LQP+ARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPISPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

TrEMBL top hitse value%identityAlignment
A0A0A0L501 Uncharacterized protein2.0e-6994Show/hide
Query:  MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPISPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKL
        MAASVVFGFTPAAT +GVM TSSTKLHFRTKPNSDLGFL SQLSGI+ISSNHSLISP+ IS APLRPSLQP+ARRICPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPISPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A1S3AWK5 50S ribosomal protein L28, chloroplastic6.1e-74100Show/hide
Query:  MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPISPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKL
        MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPISPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPISPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A5A7U1W6 50S ribosomal protein L286.1e-74100Show/hide
Query:  MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPISPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKL
        MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPISPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPISPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A6J1E916 50S ribosomal protein L28, chloroplastic1.2e-6187.33Show/hide
Query:  MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPISPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKL
        MA S V GFTP   S+GVMA SS+KLHFR+K N +LGFL+SQLSGIKISSNHSLIS SPIS APLRP+LQP+ARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPISPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A6J1IT28 50S ribosomal protein L28, chloroplastic4.4e-6489.33Show/hide
Query:  MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPISPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKL
        MA S V GFTP  +S+GVMA SS+KLHFRTKPN +LGFL+SQLSGIKISSNHSLISPSPIS APLRP+LQP+ARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPISPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

SwissProt top hitse value%identityAlignment
B8HUV7 50S ribosomal protein L288.3e-2062.67Show/hide
Query:  RICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK
        R+C  TGK+AN    VS S+ +TKKLQ VNLQ+K++WW  GKR+V+LRLSTKALKT+E  GLD+ A++AGIDL K
Subjt:  RICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK

O22795 50S ribosomal protein L28, chloroplastic1.5e-4067.81Show/hide
Query:  TPAATSAGVMATSSTK-LHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI---SPAPLRPSLQPI-ARRICPFTGKKANKKNLVSFSNHKTKKLQFVN
        T A   A +  TSS K +   T  + +LGFL SQLSG++IS      +PS +      P  P +QPI ARRICPFTGKKAN+ N VSFSNHKTKKLQFVN
Subjt:  TPAATSAGVMATSSTK-LHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI---SPAPLRPSLQPI-ARRICPFTGKKANKKNLVSFSNHKTKKLQFVN

Query:  LQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        LQYK+VWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK+
Subjt:  LQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

P30956 50S ribosomal protein L28, chloroplastic1.3e-4473.77Show/hide
Query:  RTKPNSDLGFLASQLSGIKISSNHSLISPSPISPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKAL
        ++K +S+L F+ SQLSG+KISS H + S +P+S  P +PSLQP+ARRICPFTGKK+N+ N VS SNHKTKKLQFVNLQYK++WWEAGKR+VKLRLSTKA+
Subjt:  RTKPNSDLGFLASQLSGIKISSNHSLISPSPISPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKAL

Query:  KTIEKNGLDAVAKKAGIDLRKE
        KTIEKNGLDAVAKKAGIDL K+
Subjt:  KTIEKNGLDAVAKKAGIDLRKE

P82245 50S ribosomal protein L28, chloroplastic1.3e-4478.23Show/hide
Query:  SDLGFLASQLSGIKISSNHSLISPSPISP-------APLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTK
        S+LGFL SQLSGI+       ISPSP+ P       APL+PSLQP+ARRICPFTGKK+NK N VS SNHKTK+LQFVNLQYK+VWWEAGKRFVKLRLSTK
Subjt:  SDLGFLASQLSGIKISSNHSLISPSPISP-------APLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTK

Query:  ALKTIEKNGLDAVAKKAGIDLRKE
        ALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  ALKTIEKNGLDAVAKKAGIDLRKE

Q8DG62 50S ribosomal protein L284.9e-2062.67Show/hide
Query:  RICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK
        R+C  TGKKAN    +S S+ +TKKLQ VNLQ+K+VWW  GKR+V+LRLSTKA+KT+E+ GL A AK+AG+DL K
Subjt:  RICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK

Arabidopsis top hitse value%identityAlignment
AT2G33450.1 Ribosomal L28 family1.0e-4167.81Show/hide
Query:  TPAATSAGVMATSSTK-LHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI---SPAPLRPSLQPI-ARRICPFTGKKANKKNLVSFSNHKTKKLQFVN
        T A   A +  TSS K +   T  + +LGFL SQLSG++IS      +PS +      P  P +QPI ARRICPFTGKKAN+ N VSFSNHKTKKLQFVN
Subjt:  TPAATSAGVMATSSTK-LHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI---SPAPLRPSLQPI-ARRICPFTGKKANKKNLVSFSNHKTKKLQFVN

Query:  LQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        LQYK+VWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK+
Subjt:  LQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCTTCCGTTGTCTTTGGCTTCACGCCGGCGGCCACTTCTGCCGGTGTAATGGCAACCTCCTCAACCAAACTTCACTTCAGAACTAAACCCAATTCCGATCTAGG
GTTTCTCGCTTCTCAATTGAGCGGCATCAAAATCTCCTCCAACCACTCACTCATCTCCCCCTCTCCCATTTCTCCTGCTCCTCTCAGACCTTCCCTTCAACCTATTGCTC
GTAGAATTTGTCCATTTACCGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCCTTCTCCAACCACAAGACCAAGAAATTGCAGTTCGTGAATCTTCAATACAAGAAGGTT
TGGTGGGAAGCTGGTAAGCGTTTTGTGAAATTACGTTTGTCAACTAAGGCTTTGAAGACTATTGAGAAGAATGGACTTGATGCTGTGGCTAAGAAGGCTGGAATTGATCT
TCGTAAAGAATGA
mRNA sequenceShow/hide mRNA sequence
AAACGCTCTTCCCAATTTACAAAGATAAACTCCATCAGTAACAATGGCAGCTTCCGTTGTCTTTGGCTTCACGCCGGCGGCCACTTCTGCCGGTGTAATGGCAACCTCCT
CAACCAAACTTCACTTCAGAACTAAACCCAATTCCGATCTAGGGTTTCTCGCTTCTCAATTGAGCGGCATCAAAATCTCCTCCAACCACTCACTCATCTCCCCCTCTCCC
ATTTCTCCTGCTCCTCTCAGACCTTCCCTTCAACCTATTGCTCGTAGAATTTGTCCATTTACCGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCCTTCTCCAACCACAA
GACCAAGAAATTGCAGTTCGTGAATCTTCAATACAAGAAGGTTTGGTGGGAAGCTGGTAAGCGTTTTGTGAAATTACGTTTGTCAACTAAGGCTTTGAAGACTATTGAGA
AGAATGGACTTGATGCTGTGGCTAAGAAGGCTGGAATTGATCTTCGTAAAGAATGATATGGTAATTCATGACACTTAATCTTAACTCATTTAGAATTTGAGGAAGATTTG
TTTGTATTCCTGCTGTTTTTGCCTCTTCTTGCTTGCTAGTCATCTGTTTATTTTTCATAGTCACAGTATTCTTGTATCTTTGCTTTCCTTCCTCCATTTGGCAATGAAGC
TGAAAAATCCATCCATTCT
Protein sequenceShow/hide protein sequence
MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPISPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKV
WWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE