CuGenDBv2

Gene ID	IVF0025253
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	30S ribosomal protein S8, chloroplastic
Genome location	tig00000662:72616..73020
RNA-Seq Expression	IVF0025253
Synteny	IVF0025253
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR000630 - Ribosomal protein S8 IPR035987 - Ribosomal protein S8 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

YP_004841819.1 ribosomal protein S8 [Cucumis melo subsp. melo]

1.25e-90

100

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Query:  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL
        MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL
Subjt:  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL

Query:  GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW
        GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW
Subjt:  GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW

YP_009004078.1 ribosomal protein S8 [Cucumis hystrix]

3.58e-90

99.25

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Query:  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL
        MGKDTIANIITSIRNADMNRKGMVRIP+TNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL
Subjt:  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL

Query:  GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW
        GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW
Subjt:  GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW

YP_009326025.1 ribosomal protein S8 [Citrullus lanatus]

5.08e-90

99.25

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Query:  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL
        MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQ+IPRIL
Subjt:  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL

Query:  GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW
        GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW
Subjt:  GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW

YP_009525221.1 ribosomal protein S8 [Hodgsonia macrocarpa]

3.58e-90

99.25

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Query:  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL
        MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQ+IPRIL
Subjt:  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL

Query:  GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW
        GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW
Subjt:  GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW

YP_009751857.1 ribosomal protein S8 [Indofevillea khasiana]

5.08e-90

98.51

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Query:  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL
        MGKDTIANIITSIRNADMNRKGMVRIPSTNITENI+KILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQ+IPRIL
Subjt:  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL

Query:  GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW
        GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW
Subjt:  GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW

TrEMBL top hits

e value

%identity

Alignment

A0A1S4EU50 30S ribosomal protein S8, chloroplastic

5.3e-69

100

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Query:  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL
        MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL
Subjt:  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL

Query:  GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW
        GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW
Subjt:  GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW

A0A249RXN0 30S ribosomal protein S8, chloroplastic

5.3e-69

100

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Query:  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL
        MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL
Subjt:  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL

Query:  GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW
        GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW
Subjt:  GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW

A0A249RZ88 30S ribosomal protein S8, chloroplastic

5.3e-69

100

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Query:  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL
        MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL
Subjt:  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL

Query:  GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW
        GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW
Subjt:  GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW

A0A286NFR6 30S ribosomal protein S8, chloroplastic

5.3e-69

100

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Query:  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL
        MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL
Subjt:  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL

Query:  GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW
        GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW
Subjt:  GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW

A0A2Z2CM14 30S ribosomal protein S8, chloroplastic

5.3e-69

100

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Query:  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL
        MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL
Subjt:  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL

Query:  GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW
        GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW
Subjt:  GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW

SwissProt top hits

e value

%identity

Alignment

A0ZZ70 30S ribosomal protein S8, chloroplastic

1.2e-62

88.81

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Query:  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL
        MGKDTIA+IITSIRNADMNRKG ++I STNITENIV+ILLREGFI+NVRKHRE NK F VLTLRHRRNRKGP++TILNL+RISRPGLRIYSNYQ+IPRIL
Subjt:  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL

Query:  GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW
        GGMGIVILSTSRGIMTDREARL+GIGGEILCYIW
Subjt:  GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW

Q2L942 30S ribosomal protein S8, chloroplastic

4.6e-62

88.81

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Query:  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL
        MGKDTIA+IITSIRNADMNRKG ++I STNITENIVKILLREGFI+NVRKHRE NK F VLTLRHRRNRKGP++TILNL+RISRPGLRIYSNYQ+IPRIL
Subjt:  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL

Query:  GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW
        GGMGIVILSTSRGIMTDREARL+GIGGEILC IW
Subjt:  GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW

Q2MI65 30S ribosomal protein S8, chloroplastic

1.0e-61

88.81

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Query:  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL
        MG+DTIA IITSIRNADM+RK +VRI STNITENIV+ILLREGFIENVRKHRE+NK F VLTLRHRRNRK PY+ ILNLKRISRPGLRIYSNYQ+IPRIL
Subjt:  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL

Query:  GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW
        GGMGIVILSTSRGIMTDREARL+GIGGEILCYIW
Subjt:  GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW

Q49KW3 30S ribosomal protein S8, chloroplastic

1.4e-63

89.55

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Query:  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL
        MG+DTIA+IITSIRNADMNRKG ++I STNITENIVKILLREGFI+NVRKH+E+NK F VLTLRHRRNRKGPY+TILNLKRISRPGLRIYSNYQ+IPRIL
Subjt:  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL

Query:  GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW
        GGMGIVILSTSRGIMTDREARL+GIGGEILCYIW
Subjt:  GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW

Q4VZK0 30S ribosomal protein S8, chloroplastic

3.2e-71

99.25

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Query:  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL
        MGKDTIANIITSIRNADMNRKGMVRIP+TNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL
Subjt:  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL

Query:  GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW
        GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW
Subjt:  GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW

Arabidopsis top hits

e value

%identity

Alignment

ATCG00770.1 ribosomal protein S8

2.0e-60

86.57

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Query:  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL
        MGKDTIA+IITSIRNADMNRKG VRI STNITE+IVKILLREGFIENVRKHRE+N+ F +LTLRHRRN+K  YKTILNLKRISRPGLRIYSN Q+IPRIL
Subjt:  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRIL

Query:  GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW
        GG+GIVILSTS+GIMTDREARL+ IGGEILCYIW
Subjt:  GGMGIVILSTSRGIMTDREARLQGIGGEILCYIW

Sequences

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CDS sequence

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ATGGGTAAGGACACTATTGCTAACATAATAACCTCTATTCGCAATGCTGACATGAATAGAAAAGGAATGGTTCGAATACCATCTACTAACATCACCGAAAACATTGTTAA
AATACTTTTACGAGAAGGTTTTATTGAAAACGTAAGGAAACATCGGGAAAGCAACAAGGATTTTTGGGTTTTAACCCTACGACATAGAAGAAATAGGAAAGGACCATATA
AAACGATTTTAAATTTAAAACGGATCAGTCGACCTGGTCTCCGAATATATTCTAACTATCAAAAAATTCCTAGAATTTTAGGCGGAATGGGCATTGTAATTCTGTCTACT
TCTCGGGGTATAATGACAGACCGAGAAGCTCGACTACAGGGAATCGGCGGCGAAATTTTGTGTTATATATGGTAA

mRNA sequence

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Protein sequence

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MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGGMGIVILST
SRGIMTDREARLQGIGGEILCYIW

IVF0025253 (gene) of Melon (IVF77) v1 genome