CuGenDBv2

Gene ID	IVF0025256
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	ubiquitin carboxyl-terminal hydrolase MINDY-1
Genome location	chr04:1294..3166
RNA-Seq Expression	IVF0025256
Synteny	IVF0025256
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0004843 - thiol-dependent ubiquitin-specific protease activity (molecular function) GO:1990380 - Lys48-specific deubiquitinase activity (molecular function)
InterPro domains	IPR007518 - MINDY deubiquitinase IPR033979 - MINDY deubiquitinase domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7036075.1 Ubiquitin carboxyl-terminal hydrolase MINDY-1 [Cucurbita argyrosperma subsp. argyrosperma]

1.97e-28

62.26

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Query:  VCNVLLLRNNLNLGPDATEVSEEIFLSLVAEWLIDSNSNVDNKYAGFLRTNSRTLL--------------IN------DDFEFTPECAIFYLLHIPLCHG
        +CNVLLLRNNLNLGPDATEVS+E  LSLVAE LIDSNSNVDNK AGF+    + +               +N      DDFEFTPECAIF LL IPL HG
Subjt:  VCNVLLLRNNLNLGPDATEVSEEIFLSLVAEWLIDSNSNVDNKYAGFLRTNSRTLL--------------IN------DDFEFTPECAIFYLLHIPLCHG

Query:  CIVDPQ
         IVDPQ
Subjt:  CIVDPQ

XP_022958349.1 ubiquitin carboxyl-terminal hydrolase MINDY-1-like isoform X1 [Cucurbita moschata]

2.87e-28

62.26

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Query:  VCNVLLLRNNLNLGPDATEVSEEIFLSLVAEWLIDSNSNVDNKYAGFLRTNSRTLL--------------IN------DDFEFTPECAIFYLLHIPLCHG
        +CNVLLLRNNLNLGPDATEVS+E  LSLVAE LIDSNSNVDNK AGF+    + +               +N      DDFEFTPECAIF LL IPL HG
Subjt:  VCNVLLLRNNLNLGPDATEVSEEIFLSLVAEWLIDSNSNVDNKYAGFLRTNSRTLL--------------IN------DDFEFTPECAIFYLLHIPLCHG

Query:  CIVDPQ
         IVDPQ
Subjt:  CIVDPQ

XP_022958350.1 ubiquitin carboxyl-terminal hydrolase MINDY-1-like isoform X2 [Cucurbita moschata]

2.86e-28

62.26

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Query:  VCNVLLLRNNLNLGPDATEVSEEIFLSLVAEWLIDSNSNVDNKYAGFLRTNSRTLL--------------IN------DDFEFTPECAIFYLLHIPLCHG
        +CNVLLLRNNLNLGPDATEVS+E  LSLVAE LIDSNSNVDNK AGF+    + +               +N      DDFEFTPECAIF LL IPL HG
Subjt:  VCNVLLLRNNLNLGPDATEVSEEIFLSLVAEWLIDSNSNVDNKYAGFLRTNSRTLL--------------IN------DDFEFTPECAIFYLLHIPLCHG

Query:  CIVDPQ
         IVDPQ
Subjt:  CIVDPQ

XP_022995876.1 ubiquitin carboxyl-terminal hydrolase MINDY-1-like isoform X2 [Cucurbita maxima]

2.86e-28

62.26

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Query:  VCNVLLLRNNLNLGPDATEVSEEIFLSLVAEWLIDSNSNVDNKYAGFLRTNSRTLL--------------IN------DDFEFTPECAIFYLLHIPLCHG
        +CNVLLLRNNLNLGPDATEVS+E  LSLVAE LIDSNSNVDNK AGF+    + +               +N      DDFEFTPECAIF LL IPL HG
Subjt:  VCNVLLLRNNLNLGPDATEVSEEIFLSLVAEWLIDSNSNVDNKYAGFLRTNSRTLL--------------IN------DDFEFTPECAIFYLLHIPLCHG

Query:  CIVDPQ
         IVDPQ
Subjt:  CIVDPQ

XP_023532816.1 ubiquitin carboxyl-terminal hydrolase MINDY-1-like isoform X3 [Cucurbita pepo subsp. pepo]

2.86e-28

62.26

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Query:  VCNVLLLRNNLNLGPDATEVSEEIFLSLVAEWLIDSNSNVDNKYAGFLRTNSRTLL--------------IN------DDFEFTPECAIFYLLHIPLCHG
        +CNVLLLRNNLNLGPDATEVS+E  LSLVAE LIDSNSNVDNK AGF+    + +               +N      DDFEFTPECAIF LL IPL HG
Subjt:  VCNVLLLRNNLNLGPDATEVSEEIFLSLVAEWLIDSNSNVDNKYAGFLRTNSRTLL--------------IN------DDFEFTPECAIFYLLHIPLCHG

Query:  CIVDPQ
         IVDPQ
Subjt:  CIVDPQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KR01 MINDY_DUB domain-containing protein

1.3e-23

62.26

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Query:  VCNVLLLRNNLNLGPDATEVSEEIFLSLVAEWLIDSNSNVDNKYAGFLRTNSRTLL--------------IN------DDFEFTPECAIFYLLHIPLCHG
        +CNVLLLRNNLNLGPDATEVS+E  LSLVAE LIDSNSNVDNK AGF+    + +               +N      DDFEFTPECAIF LL IPL HG
Subjt:  VCNVLLLRNNLNLGPDATEVSEEIFLSLVAEWLIDSNSNVDNKYAGFLRTNSRTLL--------------IN------DDFEFTPECAIFYLLHIPLCHG

Query:  CIVDPQ
         IVDPQ
Subjt:  CIVDPQ

A0A5A7TJ49 Protein FAM63A isoform X2

1.3e-23

62.26

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Query:  VCNVLLLRNNLNLGPDATEVSEEIFLSLVAEWLIDSNSNVDNKYAGFLRTNSRTLL--------------IN------DDFEFTPECAIFYLLHIPLCHG
        +CNVLLLRNNLNLGPDATEVS+E  LSLVAE LIDSNSNVDNK AGF+    + +               +N      DDFEFTPECAIF LL IPL HG
Subjt:  VCNVLLLRNNLNLGPDATEVSEEIFLSLVAEWLIDSNSNVDNKYAGFLRTNSRTLL--------------IN------DDFEFTPECAIFYLLHIPLCHG

Query:  CIVDPQ
         IVDPQ
Subjt:  CIVDPQ

A0A6J1H4V0 ubiquitin carboxyl-terminal hydrolase MINDY-1-like isoform X1

1.3e-23

62.26

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Query:  VCNVLLLRNNLNLGPDATEVSEEIFLSLVAEWLIDSNSNVDNKYAGFLRTNSRTLL--------------IN------DDFEFTPECAIFYLLHIPLCHG
        +CNVLLLRNNLNLGPDATEVS+E  LSLVAE LIDSNSNVDNK AGF+    + +               +N      DDFEFTPECAIF LL IPL HG
Subjt:  VCNVLLLRNNLNLGPDATEVSEEIFLSLVAEWLIDSNSNVDNKYAGFLRTNSRTLL--------------IN------DDFEFTPECAIFYLLHIPLCHG

Query:  CIVDPQ
         IVDPQ
Subjt:  CIVDPQ

A0A6J1K344 ubiquitin carboxyl-terminal hydrolase MINDY-1-like isoform X2

1.3e-23

62.26

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Query:  VCNVLLLRNNLNLGPDATEVSEEIFLSLVAEWLIDSNSNVDNKYAGFLRTNSRTLL--------------IN------DDFEFTPECAIFYLLHIPLCHG
        +CNVLLLRNNLNLGPDATEVS+E  LSLVAE LIDSNSNVDNK AGF+    + +               +N      DDFEFTPECAIF LL IPL HG
Subjt:  VCNVLLLRNNLNLGPDATEVSEEIFLSLVAEWLIDSNSNVDNKYAGFLRTNSRTLL--------------IN------DDFEFTPECAIFYLLHIPLCHG

Query:  CIVDPQ
         IVDPQ
Subjt:  CIVDPQ

A0A6J1K549 ubiquitin carboxyl-terminal hydrolase MINDY-1-like isoform X1

1.3e-23

62.26

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Query:  VCNVLLLRNNLNLGPDATEVSEEIFLSLVAEWLIDSNSNVDNKYAGFLRTNSRTLL--------------IN------DDFEFTPECAIFYLLHIPLCHG
        +CNVLLLRNNLNLGPDATEVS+E  LSLVAE LIDSNSNVDNK AGF+    + +               +N      DDFEFTPECAIF LL IPL HG
Subjt:  VCNVLLLRNNLNLGPDATEVSEEIFLSLVAEWLIDSNSNVDNKYAGFLRTNSRTLL--------------IN------DDFEFTPECAIFYLLHIPLCHG

Query:  CIVDPQ
         IVDPQ
Subjt:  CIVDPQ

SwissProt top hits

e value

%identity

Alignment

A3KQS4 Ubiquitin carboxyl-terminal hydrolase MINDY-1

3.5e-05

53.49

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Query:  DFEFTPECAIFYLLHIPLCHGCIVDPQ-VEMENKVGAIQQGSL
        DFE+TPEC +F LL IPL HG +VDPQ  E+ + VG +    L
Subjt:  DFEFTPECAIFYLLHIPLCHGCIVDPQ-VEMENKVGAIQQGSL

Q2KJ22 Ubiquitin carboxyl-terminal hydrolase MINDY-1

5.4e-06

30.58

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Query:  VCNVLLLRNNLNLGPDATEVSEEIFLSLVAEWL-------------IDSNSNVDN------KYAGFLRTNSRTLLINDDFEFTPECAIFYLLHIPLCHGC
        + N+L L+  + L P    ++ +  ++ + + L             ++   NVD+      K A  L  N R   ++ DFE+TPEC++F LL IPL HG 
Subjt:  VCNVLLLRNNLNLGPDATEVSEEIFLSLVAEWL-------------IDSNSNVDN------KYAGFLRTNSRTLLINDDFEFTPECAIFYLLHIPLCHGC

Query:  IVDPQ-VEMENKVGAIQQGSL
        +VDPQ  E  + VG +    L
Subjt:  IVDPQ-VEMENKVGAIQQGSL

Q5R7G8 Ubiquitin carboxyl-terminal hydrolase MINDY-1

9.3e-06

43.48

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Query:  IDSNSNVDNKYAGFLRTNSRTLLINDDFEFTPECAIFYLLHIPLCHGCIVDPQ-VEMENKVGAIQQGSL
        +D    V  K A  L  N+R   ++ DFE+TPEC++F LL IPL HG +VDPQ  E    VG +    L
Subjt:  IDSNSNVDNKYAGFLRTNSRTLLINDDFEFTPECAIFYLLHIPLCHGCIVDPQ-VEMENKVGAIQQGSL

Q76LS9 Ubiquitin carboxyl-terminal hydrolase MINDY-1

1.2e-05

44.93

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Query:  IDSNSNVDNKYAGFLRTNSRTLLINDDFEFTPECAIFYLLHIPLCHGCIVDPQ-VEMENKVGAIQQGSL
        +D    V  K A  L  N R   ++ DFE+TPEC+IF LL IPL HG +VDPQ  E  + VG +    L
Subjt:  IDSNSNVDNKYAGFLRTNSRTLLINDDFEFTPECAIFYLLHIPLCHGCIVDPQ-VEMENKVGAIQQGSL

Q8N5J2 Ubiquitin carboxyl-terminal hydrolase MINDY-1

2.1e-05

43.48

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Query:  IDSNSNVDNKYAGFLRTNSRTLLINDDFEFTPECAIFYLLHIPLCHGCIVDPQ-VEMENKVGAIQQGSL
        +D    V  K A  L  N R   ++ DFE+TPEC++F LL IPL HG +VDPQ  E    VG +    L
Subjt:  IDSNSNVDNKYAGFLRTNSRTLLINDDFEFTPECAIFYLLHIPLCHGCIVDPQ-VEMENKVGAIQQGSL

Arabidopsis top hits

e value

%identity

Alignment

AT4G11860.1 Protein of unknown function (DUF544)

7.7e-24

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Query:  VCNVLLLRNNLNLGPDATEVSEEIFLSLVAEWLIDSNSNVDNKYAGFLRTNSRTLL--------------IN------DDFEFTPECAIFYLLHIPLCHG
        +CNVLLLRNNLNL PD  EVS+E  +SLV + LIDSNS V+NK  G++    + +               +N      DDFEFTPECAIF LL IPL HG
Subjt:  VCNVLLLRNNLNLGPDATEVSEEIFLSLVAEWLIDSNSNVDNKYAGFLRTNSRTLL--------------IN------DDFEFTPECAIFYLLHIPLCHG

Query:  CIVDPQ-VEMENKVGAIQQGSL
         IVDPQ VE  N +G+    +L
Subjt:  CIVDPQ-VEMENKVGAIQQGSL

AT4G22960.1 Protein of unknown function (DUF544)

1.7e-10

35.45

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Query:  VCNVLLLRNNLNLGPDATEVSEEIFLSLVAEWLIDSNSNVDNKYAGFLRTNSRTLLIN------DDFEFTPECAIFYLLHIPLCHGCIVDP-QVEMENKV
        +CNVL+L++ +NL    ++VSEE  ++LV + L D++  +D    G +R  +  + ++       DFE TPE  IF  L IPL HG +VDP  VE+   +
Subjt:  VCNVLLLRNNLNLGPDATEVSEEIFLSLVAEWLIDSNSNVDNKYAGFLRTNSRTLLIN------DDFEFTPECAIFYLLHIPLCHGCIVDP-QVEMENKV

Query:  GAIQQGSLHL
        G   +  L +
Subjt:  GAIQQGSLHL

Sequences

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CDS sequence

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ATGAGGCGACTTCTTCAGTTGAACGACGGATCCGAAGTATGTAATGTTCTCTTGTTGCGGAACAACTTAAATTTGGGTCCAGATGCAACTGAAGTATCAGAGGAAATTTT
TTTATCTCTGGTTGCCGAATGGTTGATTGATTCCAATAGTAATGTCGATAATAAATATGCTGGTTTTTTGAGAACCAACAGCAGAACATTGCTGATAAATGATGATTTTG
AATTCACTCCAGAATGTGCGATTTTTTATTTGCTGCACATTCCTCTATGTCATGGTTGCATAGTTGATCCCCAGGTGGAAATGGAGAATAAAGTTGGGGCCATCCAACAA
GGAAGCCTACACCTAGTTGCTCCATTCTAA

mRNA sequence

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Protein sequence

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MRRLLQLNDGSEVCNVLLLRNNLNLGPDATEVSEEIFLSLVAEWLIDSNSNVDNKYAGFLRTNSRTLLINDDFEFTPECAIFYLLHIPLCHGCIVDPQVEMENKVGAIQQ
GSLHLVAPF

IVF0025256 (gene) of Melon (IVF77) v1 genome