CuGenDBv2

Gene ID	IVF0025259
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase
Genome location	chr03:1927195..1927539
RNA-Seq Expression	IVF0025259
Synteny	IVF0025259
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0016310 - phosphorylation (biological process) GO:0016020 - membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004176 - ATP-dependent peptidase activity (molecular function) GO:0004222 - metalloendopeptidase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0016301 - kinase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0041353.1 Beta-galactosidase [Cucumis melo var. makuwa]

6.58e-33

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Query:  MTDSINSHSTNRLSENDCFETNSTDSHTNSKAGENDRFETTILEDMGEQGSIDGVIIDKEDMIDKNEVIGKHTEKETKSNHSRNASKYDPSLDFPIALRK
        MTDSINSHS NR+SEND  + NST+S+TNSKA ENDRFET +LED+GEQ SI+GVI  +ED ID+N+V+ KHTE ETK NH  N SK DPSLD  IALRK
Subjt:  MTDSINSHSTNRLSENDCFETNSTDSHTNSKAGENDRFETTILEDMGEQGSIDGVIIDKEDMIDKNEVIGKHTEKETKSNHSRNASKYDPSLDFPIALRK

KAA0042115.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.72e-35

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Query:  MTDSINSHSTNRLSENDCFETNSTDSHTNSKAGENDRFETTILEDMGEQGSIDGVIIDKEDMIDKNEVIGKHTEKETKSNHSRNASKYDPSLDFPIALRK
        M DSINSHS  R+SEND  ETNS DSHTNSK GE+D FET +LEDMGEQGSID VIID+E  ID+NEV+ KHTE E KSNHS N SKY PSLD PIALRK
Subjt:  MTDSINSHSTNRLSENDCFETNSTDSHTNSKAGENDRFETTILEDMGEQGSIDGVIIDKEDMIDKNEVIGKHTEKETKSNHSRNASKYDPSLDFPIALRK

KAA0054942.1 putative mitochondrial protein [Cucumis melo var. makuwa]

1.57e-36

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Query:  MTDSINSHSTNRLSENDCFETNSTDSHTNSKAGENDRFETTILEDMGEQGSIDGVIIDKEDMIDKNEVIGKHTEKETKSNHSRNASKYDPSLDFPIALRK
        MTDSIN+H+ N+++END  ETNS D HTNSK GENDRFET +L DM EQGSI GVIID ED ID+NEV+ KHTE ET+SNH  N SKYDPSLD PIA+RK
Subjt:  MTDSINSHSTNRLSENDCFETNSTDSHTNSKAGENDRFETTILEDMGEQGSIDGVIIDKEDMIDKNEVIGKHTEKETKSNHSRNASKYDPSLDFPIALRK

KAA0056603.1 uncharacterized protein E6C27_scaffold288G001160 [Cucumis melo var. makuwa]

1.29e-61

100

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Query:  MTDSINSHSTNRLSENDCFETNSTDSHTNSKAGENDRFETTILEDMGEQGSIDGVIIDKEDMIDKNEVIGKHTEKETKSNHSRNASKYDPSLDFPIALRK
        MTDSINSHSTNRLSENDCFETNSTDSHTNSKAGENDRFETTILEDMGEQGSIDGVIIDKEDMIDKNEVIGKHTEKETKSNHSRNASKYDPSLDFPIALRK
Subjt:  MTDSINSHSTNRLSENDCFETNSTDSHTNSKAGENDRFETTILEDMGEQGSIDGVIIDKEDMIDKNEVIGKHTEKETKSNHSRNASKYDPSLDFPIALRK

Query:  G
        G
Subjt:  G

TYK26807.1 Beta-galactosidase [Cucumis melo var. makuwa]

2.52e-32

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Query:  MTDSINSHSTNRLSENDCFETNSTDSHTNSKAGENDRFETTILEDMGEQGSIDGVIIDKEDMIDKNEVIGKHTEKETKSNHSRNASKYDPSLDFPIALRK
        MTDSINSHS NR+SEND  + NST+S+TNSKA ENDRFET +LED+GEQ SI+GVI  +ED ID+N+V+ KHTE ET+ NH  N SK DPSLD  IALRK
Subjt:  MTDSINSHSTNRLSENDCFETNSTDSHTNSKAGENDRFETTILEDMGEQGSIDGVIIDKEDMIDKNEVIGKHTEKETKSNHSRNASKYDPSLDFPIALRK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TDX0 Beta-galactosidase

1.9e-27

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Query:  MTDSINSHSTNRLSENDCFETNSTDSHTNSKAGENDRFETTILEDMGEQGSIDGVIIDKEDMIDKNEVIGKHTEKETKSNHSRNASKYDPSLDFPIALRK
        MTDSINSHS NR+SEND  + NST+S+TNSKA ENDRFET +LED+GEQ SI+GVI  +ED ID+N+V+ KHTE ETK NH  N SK DPSLD  IALRK
Subjt:  MTDSINSHSTNRLSENDCFETNSTDSHTNSKAGENDRFETTILEDMGEQGSIDGVIIDKEDMIDKNEVIGKHTEKETKSNHSRNASKYDPSLDFPIALRK

A0A5A7TL00 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.4e-30

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Query:  MTDSINSHSTNRLSENDCFETNSTDSHTNSKAGENDRFETTILEDMGEQGSIDGVIIDKEDMIDKNEVIGKHTEKETKSNHSRNASKYDPSLDFPIALRK
        M DSINSHS  R+SEND  ETNS DSHTNSK GE+D FET +LEDMGEQGSID VIID+E  ID+NEV+ KHTE E KSNHS N SKY PSLD PIALRK
Subjt:  MTDSINSHSTNRLSENDCFETNSTDSHTNSKAGENDRFETTILEDMGEQGSIDGVIIDKEDMIDKNEVIGKHTEKETKSNHSRNASKYDPSLDFPIALRK

A0A5A7UGJ7 Putative mitochondrial protein

4.5e-29

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Query:  MTDSINSHSTNRLSENDCFETNSTDSHTNSKAGENDRFETTILEDMGEQGSIDGVIIDKEDMIDKNEVIGKHTEKETKSNHSRNASKYDPSLDFPIALRK
        MTDSIN+H+ N+++END  ETNS D HTNSK GENDRFET +L DM EQGSI GVIID ED ID+NEV+ KHTE ET+SNH  N SKYDPSLD PIA+RK
Subjt:  MTDSINSHSTNRLSENDCFETNSTDSHTNSKAGENDRFETTILEDMGEQGSIDGVIIDKEDMIDKNEVIGKHTEKETKSNHSRNASKYDPSLDFPIALRK

A0A5A7UL33 Uncharacterized protein

6.3e-47

99.02

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Query:  MTDSINSHSTNRLSENDCFETNSTDSHTNSKAGENDRFETTILEDMGEQGSIDGVIIDKEDMIDKNEVIGKHTEKETKSNHSRNASKYDPSLDFPIALRK
        MTDSINSHSTNRLSENDCFETNSTDSHTNSKAGENDRFETTILEDMGEQGSIDGVIIDKEDMIDKNEVIGKHTEKETKSNHSRNASKYDPSLDFPIALRK
Subjt:  MTDSINSHSTNRLSENDCFETNSTDSHTNSKAGENDRFETTILEDMGEQGSIDGVIIDKEDMIDKNEVIGKHTEKETKSNHSRNASKYDPSLDFPIALRK

Query:  GK
        G+
Subjt:  GK

A0A5D3DSR2 Beta-galactosidase

5.6e-27

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Query:  MTDSINSHSTNRLSENDCFETNSTDSHTNSKAGENDRFETTILEDMGEQGSIDGVIIDKEDMIDKNEVIGKHTEKETKSNHSRNASKYDPSLDFPIALRK
        MTDSINSHS NR+SEND  + NST+S+TNSKA ENDRFET +LED+GEQ SI+GVI  +ED ID+N+V+ KHTE ET+ NH  N SK DPSLD  IALRK
Subjt:  MTDSINSHSTNRLSENDCFETNSTDSHTNSKAGENDRFETTILEDMGEQGSIDGVIIDKEDMIDKNEVIGKHTEKETKSNHSRNASKYDPSLDFPIALRK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGACTGATTCCATTAACTCACATAGTACTAACAGATTAAGTGAGAATGACTGCTTTGAGACGAATTCAACTGATTCACATACCAATAGTAAGGCAGGTGAGAATGATAG
GTTCGAGACAACTATTCTAGAAGATATGGGTGAGCAAGGTAGTATTGATGGGGTCATTATTGACAAAGAGGATATGATTGATAAGAACGAGGTTATTGGTAAACATACTG
AAAAAGAAACTAAGTCAAATCATTCTAGAAATGCTAGCAAGTATGATCCTTCTCTTGATTTTCCTATTGCACTGAGAAAAGGTAAAGGGTTGATGTTTAGAAAGACAGAT
AGAAAAAACCAATGA

mRNA sequence

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Protein sequence

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MTDSINSHSTNRLSENDCFETNSTDSHTNSKAGENDRFETTILEDMGEQGSIDGVIIDKEDMIDKNEVIGKHTEKETKSNHSRNASKYDPSLDFPIALRKGKGLMFRKTD
RKNQ

IVF0025259 (gene) of Melon (IVF77) v1 genome