; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0025268 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0025268
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr12:14947554..14947727
RNA-Seq ExpressionIVF0025268
SyntenyIVF0025268
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052379.1 hypothetical protein E6C27_scaffold207G002260 [Cucumis melo var. makuwa]1.41e-1188.57Show/hide
Query:  LVDFHGFSRKQDENPKVSGQRSRQEENPSMKTLKG
        LV+FH FSRKQDENPK+SGQRSRQEENPSM TLKG
Subjt:  LVDFHGFSRKQDENPKVSGQRSRQEENPSMKTLKG

KAA0053193.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.44e-1368.85Show/hide
Query:  AFDV-GRG-----FAACSNILTSIGVGLVDFHGFSRKQDENPKVSGQRSRQEENPSMKTLK
        +FDV G G     FA  SN+L S+  GLV+FHGFSRKQ ENPKV GQRSRQEEN SMKTLK
Subjt:  AFDV-GRG-----FAACSNILTSIGVGLVDFHGFSRKQDENPKVSGQRSRQEENPSMKTLK

TYK00149.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.37e-0966.67Show/hide
Query:  AFDV-GRG-----FAACSNILTSIGVGLVDFHGFSRKQDENPKVSGQRSRQEEN
        +FDV G G     FA  SN+L S+  GLV+FHGFSRKQ ENPKV GQRSRQEEN
Subjt:  AFDV-GRG-----FAACSNILTSIGVGLVDFHGFSRKQDENPKVSGQRSRQEEN

TYK11141.1 putative mitochondrial protein [Cucumis melo var. makuwa]4.19e-0570.59Show/hide
Query:  GLVDFHGFSRKQDENPKVSGQRSRQEENPSMKTL
        GLV+FH FS KQD+NPKV  QRSRQEENP++ +L
Subjt:  GLVDFHGFSRKQDENPKVSGQRSRQEENPSMKTL

TYK30860.1 reactive Intermediate Deaminase A [Cucumis melo var. makuwa]2.27e-1188.57Show/hide
Query:  LVDFHGFSRKQDENPKVSGQRSRQEENPSMKTLKG
        LV+FH FSRKQDENPK+SGQRSRQEENPSM TLKG
Subjt:  LVDFHGFSRKQDENPKVSGQRSRQEENPSMKTLKG

TrEMBL top hitse value%identityAlignment
A0A5A7UB76 Ty3-gypsy retrotransposon protein5.3e-1068.85Show/hide
Query:  AFDV-GRG-----FAACSNILTSIGVGLVDFHGFSRKQDENPKVSGQRSRQEENPSMKTLK
        +FDV G G     FA  SN+L S+  GLV+FHGFSRKQ ENPKV GQRSRQEEN SMKTLK
Subjt:  AFDV-GRG-----FAACSNILTSIGVGLVDFHGFSRKQDENPKVSGQRSRQEENPSMKTLK

A0A5A7UFX3 Uncharacterized protein8.4e-0888.57Show/hide
Query:  LVDFHGFSRKQDENPKVSGQRSRQEENPSMKTLKG
        LV+FH FSRKQDENPK+SGQRSRQEENPSM TLKG
Subjt:  LVDFHGFSRKQDENPKVSGQRSRQEENPSMKTLKG

A0A5D3BPV7 Ty3-gypsy retrotransposon protein5.4e-0766.67Show/hide
Query:  AFDV-GRG-----FAACSNILTSIGVGLVDFHGFSRKQDENPKVSGQRSRQEEN
        +FDV G G     FA  SN+L S+  GLV+FHGFSRKQ ENPKV GQRSRQEEN
Subjt:  AFDV-GRG-----FAACSNILTSIGVGLVDFHGFSRKQDENPKVSGQRSRQEEN

A0A5D3E5H8 Reactive Intermediate Deaminase A8.4e-0888.57Show/hide
Query:  LVDFHGFSRKQDENPKVSGQRSRQEENPSMKTLKG
        LV+FH FSRKQDENPK+SGQRSRQEENPSM TLKG
Subjt:  LVDFHGFSRKQDENPKVSGQRSRQEENPSMKTLKG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTTCGACGTTGGTCGTGGGTTTGCGGCATGTTCTAACATTTTGACGTCTATTGGAGTCGGTTTAGTCGACTTTCATGGGTTTAGCCGCAAGCAAGACGAAAATCC
AAAAGTCTCCGGTCAGAGGAGCCGACAAGAAGAAAATCCAAGTATGAAGACTTTGAAAGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTTCGACGTTGGTCGTGGGTTTGCGGCATGTTCTAACATTTTGACGTCTATTGGAGTCGGTTTAGTCGACTTTCATGGGTTTAGCCGCAAGCAAGACGAAAATCC
AAAAGTCTCCGGTCAGAGGAGCCGACAAGAAGAAAATCCAAGTATGAAGACTTTGAAAGGTTGA
Protein sequenceShow/hide protein sequence
MAFDVGRGFAACSNILTSIGVGLVDFHGFSRKQDENPKVSGQRSRQEENPSMKTLKG