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IVF0025270 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0025270
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr06:23700864..23701569
RNA-Seq ExpressionIVF0025270
SyntenyIVF0025270
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.72e-10693.3Show/hide
Query:  MDYLSRLLNNLADKGKINGVNFDPNLNLTHILFADDILIFVEDKDDYASNLKMILHLFESASGLNINLSKFTIFPINVPADRANSIADSWGISKGHLPTS
        MDYLSRLLNNLADK KINGV F PNLNLTHILFADDILIFVED+DDY SNLKMILHLFESASGLNINLSK TIFPINVP DRA SIADSWGISKGHLPTS
Subjt:  MDYLSRLLNNLADKGKINGVNFDPNLNLTHILFADDILIFVEDKDDYASNLKMILHLFESASGLNINLSKFTIFPINVPADRANSIADSWGISKGHLPTS

Query:  YLGMPLGGKPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWN
        YLGMPLGG+PSSSNFWDNVLQKIQKKLS+WKYSQLSKGGRITLINSTLESLPIYQ+SVFKVPKGIAQKIEA WRNFLWN
Subjt:  YLGMPLGGKPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWN

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.26e-10793.3Show/hide
Query:  MDYLSRLLNNLADKGKINGVNFDPNLNLTHILFADDILIFVEDKDDYASNLKMILHLFESASGLNINLSKFTIFPINVPADRANSIADSWGISKGHLPTS
        MDYLS LL NLA+KGKINGVNF PNLNLTHILFADDILIFVEDK+DY SNLKMILHLFESASGLNINLSK TIFPINVP DRANSI DSWGISKG LPT+
Subjt:  MDYLSRLLNNLADKGKINGVNFDPNLNLTHILFADDILIFVEDKDDYASNLKMILHLFESASGLNINLSKFTIFPINVPADRANSIADSWGISKGHLPTS

Query:  YLGMPLGGKPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWN
        YLGMPLGGKPSSSNFWDN+LQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWN
Subjt:  YLGMPLGGKPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWN

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.08e-10893.3Show/hide
Query:  MDYLSRLLNNLADKGKINGVNFDPNLNLTHILFADDILIFVEDKDDYASNLKMILHLFESASGLNINLSKFTIFPINVPADRANSIADSWGISKGHLPTS
        MDYLS LL NLA+KGKINGVNF PNLNLTHILFADDILIFVEDK+DY SNLKMILHLFESASGLNINLSK TIFPINVP DRANSI DSWGISKG LPT+
Subjt:  MDYLSRLLNNLADKGKINGVNFDPNLNLTHILFADDILIFVEDKDDYASNLKMILHLFESASGLNINLSKFTIFPINVPADRANSIADSWGISKGHLPTS

Query:  YLGMPLGGKPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWN
        YLGMPLGGKPSSSNFWDN+LQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWN
Subjt:  YLGMPLGGKPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWN

TYJ99326.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]8.48e-14493.59Show/hide
Query:  MDYLSRLLNNLADKGKINGVNFDPNLNLTHILFADDILIFVEDKDDYASNLKMILHLFESASGLNINLSKFTIFPINVPADRANSIADSWGISKGHLPTS
        MDYLSRLLNNLADKGKINGVNF PNLNLTHILFADDILIFVEDKDDY SNLKMILHLFESASGLNINLSK TIFPINVPADRANSIADSWGISKGHLPTS
Subjt:  MDYLSRLLNNLADKGKINGVNFDPNLNLTHILFADDILIFVEDKDDYASNLKMILHLFESASGLNINLSKFTIFPINVPADRANSIADSWGISKGHLPTS

Query:  YLGMPLGGKPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWN-----------DGTKLSPQKR
        YLGMPLGGKPSSSNFWDNVLQKIQKKLSSWKYSQLSKG RITLINSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWN           DGTKLSPQKR
Subjt:  YLGMPLGGKPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWN-----------DGTKLSPQKR

Query:  KEASVFTLSIAQILPSSVNGFGNSYLKKILYGNA
        KEASVFTLSIAQILPSSVNGFGNSYLKKILYGNA
Subjt:  KEASVFTLSIAQILPSSVNGFGNSYLKKILYGNA

TYK29578.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.78e-9684.32Show/hide
Query:  MDYLSRLLNNLADKGKINGVNFDPNLNLTHILFADDILIFVEDKDDYASNLKMILHLFESASGLNINLSKFTIFPINVPADRANSIADSWGISKGHLPTS
        MDYLSRLLNNLADK KINGVNF PNLNLTHILFADDILIFVED+DDY SNLKMILHLFESASGLNINLSK TIFPINVP D A SIADSWGISKGHLPTS
Subjt:  MDYLSRLLNNLADKGKINGVNFDPNLNLTHILFADDILIFVEDKDDYASNLKMILHLFESASGLNINLSKFTIFPINVPADRANSIADSWGISKGHLPTS

Query:  YLGMPLGGKPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWNDGTKLS
        YLGMPLGGKPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQ  ++KV  G  + I  +  N  WN    LS
Subjt:  YLGMPLGGKPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWNDGTKLS

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein1.8e-9093.3Show/hide
Query:  MDYLSRLLNNLADKGKINGVNFDPNLNLTHILFADDILIFVEDKDDYASNLKMILHLFESASGLNINLSKFTIFPINVPADRANSIADSWGISKGHLPTS
        MDYLSRLLNNLADK KINGV F PNLNLTHILFADDILIFVED+DDY SNLKMILHLFESASGLNINLSK TIFPINVP DRA SIADSWGISKGHLPTS
Subjt:  MDYLSRLLNNLADKGKINGVNFDPNLNLTHILFADDILIFVEDKDDYASNLKMILHLFESASGLNINLSKFTIFPINVPADRANSIADSWGISKGHLPTS

Query:  YLGMPLGGKPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWN
        YLGMPLGG+PSSSNFWDNVLQKIQKKLS+WKYSQLSKGGRITLINSTLESLPIYQ+SVFKVPKGIAQKIEA WRNFLWN
Subjt:  YLGMPLGGKPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWN

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein1.4e-9093.3Show/hide
Query:  MDYLSRLLNNLADKGKINGVNFDPNLNLTHILFADDILIFVEDKDDYASNLKMILHLFESASGLNINLSKFTIFPINVPADRANSIADSWGISKGHLPTS
        MDYLS LL NLA+KGKINGVNF PNLNLTHILFADDILIFVEDK+DY SNLKMILHLFESASGLNINLSK TIFPINVP DRANSI DSWGISKG LPT+
Subjt:  MDYLSRLLNNLADKGKINGVNFDPNLNLTHILFADDILIFVEDKDDYASNLKMILHLFESASGLNINLSKFTIFPINVPADRANSIADSWGISKGHLPTS

Query:  YLGMPLGGKPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWN
        YLGMPLGGKPSSSNFWDN+LQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWN
Subjt:  YLGMPLGGKPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWN

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein1.4e-9093.3Show/hide
Query:  MDYLSRLLNNLADKGKINGVNFDPNLNLTHILFADDILIFVEDKDDYASNLKMILHLFESASGLNINLSKFTIFPINVPADRANSIADSWGISKGHLPTS
        MDYLS LL NLA+KGKINGVNF PNLNLTHILFADDILIFVEDK+DY SNLKMILHLFESASGLNINLSK TIFPINVP DRANSI DSWGISKG LPT+
Subjt:  MDYLSRLLNNLADKGKINGVNFDPNLNLTHILFADDILIFVEDKDDYASNLKMILHLFESASGLNINLSKFTIFPINVPADRANSIADSWGISKGHLPTS

Query:  YLGMPLGGKPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWN
        YLGMPLGGKPSSSNFWDN+LQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWN
Subjt:  YLGMPLGGKPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWN

A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein7.9e-7884.32Show/hide
Query:  MDYLSRLLNNLADKGKINGVNFDPNLNLTHILFADDILIFVEDKDDYASNLKMILHLFESASGLNINLSKFTIFPINVPADRANSIADSWGISKGHLPTS
        MDYLSRLLNNLADK KINGVNF PNLNLTHILFADDILIFVED+DDY SNLKMILHLFESASGLNINLSK TIFPINVP D A SIADSWGISKGHLPTS
Subjt:  MDYLSRLLNNLADKGKINGVNFDPNLNLTHILFADDILIFVEDKDDYASNLKMILHLFESASGLNINLSKFTIFPINVPADRANSIADSWGISKGHLPTS

Query:  YLGMPLGGKPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWNDGTKLS
        YLGMPLGGKPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQ  ++KV  G  + I  +  N  WN    LS
Subjt:  YLGMPLGGKPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWNDGTKLS

A0A5D3BJP3 LINE-1 retrotransposable element ORF2 protein1.3e-11793.59Show/hide
Query:  MDYLSRLLNNLADKGKINGVNFDPNLNLTHILFADDILIFVEDKDDYASNLKMILHLFESASGLNINLSKFTIFPINVPADRANSIADSWGISKGHLPTS
        MDYLSRLLNNLADKGKINGVNF PNLNLTHILFADDILIFVEDKDDY SNLKMILHLFESASGLNINLSK TIFPINVPADRANSIADSWGISKGHLPTS
Subjt:  MDYLSRLLNNLADKGKINGVNFDPNLNLTHILFADDILIFVEDKDDYASNLKMILHLFESASGLNINLSKFTIFPINVPADRANSIADSWGISKGHLPTS

Query:  YLGMPLGGKPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWN-----------DGTKLSPQKR
        YLGMPLGGKPSSSNFWDNVLQKIQKKLSSWKYSQLSKG RITLINSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWN           DGTKLSPQKR
Subjt:  YLGMPLGGKPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWN-----------DGTKLSPQKR

Query:  KEASVFTLSIAQILPSSVNGFGNSYLKKILYGNA
        KEASVFTLSIAQILPSSVNGFGNSYLKKILYGNA
Subjt:  KEASVFTLSIAQILPSSVNGFGNSYLKKILYGNA

SwissProt top hitse value%identityAlignment
O00370 LINE-1 retrotransposable element ORF2 protein1.6e-0625.66Show/hide
Query:  LFADDILIFVEDKDDYASNLKMILHLFESASGLNINLSKFTIFPINVPADRANSIADSWGISKGHLPTSYLGMPL--GGKPSSSNFWDNVLQKIQKKLSS
        LFADD+++++E+    A NL  ++  F   SG  IN+ K   F  N      + I      +       YLG+ L    K      +  +L++I++  + 
Subjt:  LFADDILIFVEDKDDYASNLKMILHLFESASGLNINLSKFTIFPINVPADRANSIADSWGISKGHLPTSYLGMPL--GGKPSSSNFWDNVLQKIQKKLSS

Query:  WKYSQLSKGGRITLINSTLESLPIYQLSV--FKVPKGIAQKIEAYWRNFLWN
        WK    S  GRI ++   +    IY+ +    K+P     ++E     F+WN
Subjt:  WKYSQLSKGGRITLINSTLESLPIYQLSV--FKVPKGIAQKIEAYWRNFLWN

P08548 LINE-1 reverse transcriptase homolog7.8e-0623.68Show/hide
Query:  LFADDILIFVEDKDDYASNLKMILHLFESASGLNINLSKFTIFPINVPADRANSIADSWGISKGHLPTSYLGMPL--GGKPSSSNFWDNVLQKIQKKLSS
        LFADD+++++E+  D  + L  ++  + + SG  IN  K   F          ++ DS   +       YLG+ L    K      ++ + ++I + ++ 
Subjt:  LFADDILIFVEDKDDYASNLKMILHLFESASGLNINLSKFTIFPINVPADRANSIADSWGISKGHLPTSYLGMPL--GGKPSSSNFWDNVLQKIQKKLSS

Query:  WKYSQLSKGGRITLINSTLESLPIYQLSV--FKVPKGIAQKIEAYWRNFLWN
        WK    S  GRI ++  ++    IY  +    K P    + +E    +F+WN
Subjt:  WKYSQLSKGGRITLINSTLESLPIYQLSV--FKVPKGIAQKIEAYWRNFLWN

P0C2F6 Putative ribonuclease H protein At1g657503.2e-0727.38Show/hide
Query:  MPLGGKPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWNDGTKLSPQ
        MP+  K  + + +  +L+++  ++S W+   LS  GR+TL  + L S+P++ +S   +P+ I  +++   R FLW    +   Q
Subjt:  MPLGGKPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWNDGTKLSPQ

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACTATCTCAGCCGTCTTTTGAACAACTTAGCAGATAAAGGAAAAATCAATGGAGTCAACTTCGATCCTAACCTTAATCTTACCCACATCCTATTTGCGGATGACAT
CCTCATCTTTGTAGAGGATAAGGATGACTATGCATCAAACCTCAAAATGATCCTTCATCTCTTTGAATCAGCCTCGGGCCTTAACATAAATCTGTCCAAGTTTACTATCT
TTCCCATAAACGTCCCGGCAGATCGTGCAAACTCTATAGCGGACAGTTGGGGAATAAGCAAGGGCCATCTCCCGACATCTTACCTTGGTATGCCCTTAGGAGGGAAGCCC
TCCTCATCTAACTTCTGGGACAATGTACTTCAGAAAATCCAGAAAAAATTGAGTAGCTGGAAATACTCTCAGTTATCCAAAGGCGGCAGAATCACTCTGATAAACTCAAC
TCTTGAAAGCCTTCCCATATATCAACTGTCGGTCTTCAAGGTCCCCAAAGGTATAGCACAGAAAATTGAAGCTTATTGGAGAAATTTCCTTTGGAATGATGGAACCAAAT
TGTCTCCCCAAAAGAGAAAGGAGGCCTCGGTATTCACTCTGTCCATAGCACAAATTTTGCCCTCCTCTGTAAATGGCTTTGGAAATTCCTATCTGAAAAAGATCCTTTAT
GGAAACGCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACTATCTCAGCCGTCTTTTGAACAACTTAGCAGATAAAGGAAAAATCAATGGAGTCAACTTCGATCCTAACCTTAATCTTACCCACATCCTATTTGCGGATGACAT
CCTCATCTTTGTAGAGGATAAGGATGACTATGCATCAAACCTCAAAATGATCCTTCATCTCTTTGAATCAGCCTCGGGCCTTAACATAAATCTGTCCAAGTTTACTATCT
TTCCCATAAACGTCCCGGCAGATCGTGCAAACTCTATAGCGGACAGTTGGGGAATAAGCAAGGGCCATCTCCCGACATCTTACCTTGGTATGCCCTTAGGAGGGAAGCCC
TCCTCATCTAACTTCTGGGACAATGTACTTCAGAAAATCCAGAAAAAATTGAGTAGCTGGAAATACTCTCAGTTATCCAAAGGCGGCAGAATCACTCTGATAAACTCAAC
TCTTGAAAGCCTTCCCATATATCAACTGTCGGTCTTCAAGGTCCCCAAAGGTATAGCACAGAAAATTGAAGCTTATTGGAGAAATTTCCTTTGGAATGATGGAACCAAAT
TGTCTCCCCAAAAGAGAAAGGAGGCCTCGGTATTCACTCTGTCCATAGCACAAATTTTGCCCTCCTCTGTAAATGGCTTTGGAAATTCCTATCTGAAAAAGATCCTTTAT
GGAAACGCCTGA
Protein sequenceShow/hide protein sequence
MDYLSRLLNNLADKGKINGVNFDPNLNLTHILFADDILIFVEDKDDYASNLKMILHLFESASGLNINLSKFTIFPINVPADRANSIADSWGISKGHLPTSYLGMPLGGKP
SSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWNDGTKLSPQKRKEASVFTLSIAQILPSSVNGFGNSYLKKILY
GNA