CuGenDBv2

Gene ID	IVF0025273
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	F-box protein GID2-like
Genome location	chr03:26169357..26170033
RNA-Seq Expression	IVF0025273
Synteny	IVF0025273
Gene Ontology terms	GO:0009740 - gibberellic acid mediated signaling pathway (biological process) GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR045118 - F-box only protein FBXO9/FBXO48

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6598351.1 F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia]

6.31e-76

81.56

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Query:  IKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYP
        +KK KS S +Q+ P    P  S FANLDDNLLFEVFKHVDARTLATAAGV+KQW+KTAHDE LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSLYP
Subjt:  IKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYP

Query:  FPPMIGCNH--PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        FPP+IG     PWGKDE+HLSLSLLSIRYYEKMKFKNRPTS
Subjt:  FPPMIGCNH--PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

XP_004143017.1 F-box protein GID2 [Cucumis sativus]

2.66e-96

95.8

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Query:  MNNKIKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH
        MNN+IKKFKS SNQQE PD SQPQPSTFANLDDNLLFEVFKHVDARTLAT AGV+KQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH
Subjt:  MNNKIKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH

Query:  SLYPFPPMIGCNHPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        SLYPFPPMIGCNHPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  SLYPFPPMIGCNHPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

XP_008445558.1 PREDICTED: F-box protein GID2-like [Cucumis melo]

1.08e-102

100

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Query:  MNNKIKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH
        MNNKIKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH
Subjt:  MNNKIKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH

Query:  SLYPFPPMIGCNHPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        SLYPFPPMIGCNHPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  SLYPFPPMIGCNHPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

XP_022962352.1 F-box protein GID2-like [Cucurbita moschata]

1.05e-74

80.85

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Query:  IKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYP
        +KK KS S +Q+ P    P  S FANLDDNLLFEVFKHVDARTLATAAGV+KQW KTAHDE LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSLYP
Subjt:  IKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYP

Query:  FPPMIGCNH--PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        FPP++G     PWGKDE+HLSLSLLSIRYYEKMKFKNRPTS
Subjt:  FPPMIGCNH--PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

XP_023522812.1 F-box protein GID2-like [Cucurbita pepo subsp. pepo]

9.27e-76

82.27

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Query:  IKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYP
        +KK KS S +Q+ P  S    S FANLDDNLLFEVFKHVDARTLATAAGV+KQW+KTAHDE LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSLYP
Subjt:  IKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYP

Query:  FPPMIGCNH--PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        FPP+IG     PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  FPPMIGCNH--PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LR75 F-box domain-containing protein

3.4e-74

95.8

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Query:  MNNKIKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH
        MNN+IKKFKS SNQQE PD SQPQPSTFANLDDNLLFEVFKHVDARTLAT AGV+KQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH
Subjt:  MNNKIKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH

Query:  SLYPFPPMIGCNHPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        SLYPFPPMIGCNHPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  SLYPFPPMIGCNHPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

A0A1S3BDV6 F-box protein GID2-like

4.6e-79

100

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Query:  MNNKIKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH
        MNNKIKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH
Subjt:  MNNKIKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH

Query:  SLYPFPPMIGCNHPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        SLYPFPPMIGCNHPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  SLYPFPPMIGCNHPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

A0A5A7V5E1 F-box protein GID2-like

4.6e-79

100

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Query:  MNNKIKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH
        MNNKIKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH
Subjt:  MNNKIKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH

Query:  SLYPFPPMIGCNHPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        SLYPFPPMIGCNHPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  SLYPFPPMIGCNHPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

A0A6J1HCI1 F-box protein GID2-like

1.0e-57

80.85

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Query:  IKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYP
        +KK KS S +Q+ P    P  S FANLDDNLLFEVFKHVDARTLATAAGV+KQW KTAHDE LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSLYP
Subjt:  IKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYP

Query:  FPPMIGCNH--PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        FPP++G     PWGKDE+HLSLSLLSIRYYEKMKFKNRPTS
Subjt:  FPPMIGCNH--PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

A0A6J1K7I7 F-box protein GID2-like

3.2e-56

79.43

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Query:  IKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYP
        +KK KS S +Q+ P    P  S FANLDDNLLFEVFKHVDARTLATA+GV+KQW+KTAHDE LWELLCTKHW N+GCAN QLRSVVLALGGFRRLHSLYP
Subjt:  IKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYP

Query:  FPPMIGCNH--PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        FPP+IG      WGK EVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  FPPMIGCNH--PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

2.6e-23

43.38

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Query:  QQEKP--DESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLY--------
        Q+E+P  D  + +     +L ++L+FEV +  +ARTLA AA V++ W + A DERLWE  C + W NLG + +QLR+VVL+LGGFRRLH++Y        
Subjt:  QQEKP--DESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLY--------

Query:  -PFPPMIGCNHP---WGKDEVHLSLSLLSIRYYEKM
           P   G   P    G+D+V LSLSL SI +++ M
Subjt:  -PFPPMIGCNHP---WGKDEVHLSLSLLSIRYYEKM

Q9LUB6 F-box protein SNE

5.7e-10

34.95

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Query:  NLLFEVFKHVDARTLATAAGVNKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGC-NHPWGKDEVHLSLSLLSIRYY
        ++L E+ + +D  +L +AA V + W   A ++ +WE LC +  +     +  LRSVV ALGG+R L+ L   P +       W +D++ LSLSL  + YY
Subjt:  NLLFEVFKHVDARTLATAAGVNKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGC-NHPWGKDEVHLSLSLLSIRYY

Query:  EKM
        E++
Subjt:  EKM

Q9STX3 F-box protein GID2

2.6e-39

61.24

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Query:  EKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNHP-
        +K   ++ +   F+NLD+NL++EV KHVDA+TLA ++ V+K W KTA DERLWEL+CT+HWTN+GC   QLRSVVLALGGFRRLHSLY +P  +   +P 
Subjt:  EKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNHP-

Query:  --WGKDEVHLSLSLLSIRYYEKMKFKNRP
          +GKDE+ L+LSLLSIRYYEKM F  RP
Subjt:  --WGKDEVHLSLSLLSIRYYEKMKFKNRP

Arabidopsis top hits

e value

%identity

Alignment

AT4G24210.1 F-box family protein

1.9e-40

61.24

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Query:  EKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNHP-
        +K   ++ +   F+NLD+NL++EV KHVDA+TLA ++ V+K W KTA DERLWEL+CT+HWTN+GC   QLRSVVLALGGFRRLHSLY +P  +   +P 
Subjt:  EKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNHP-

Query:  --WGKDEVHLSLSLLSIRYYEKMKFKNRP
          +GKDE+ L+LSLLSIRYYEKM F  RP
Subjt:  --WGKDEVHLSLSLLSIRYYEKMKFKNRP

AT5G48170.1 F-box family protein

4.1e-11

34.95

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Query:  NLLFEVFKHVDARTLATAAGVNKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGC-NHPWGKDEVHLSLSLLSIRYY
        ++L E+ + +D  +L +AA V + W   A ++ +WE LC +  +     +  LRSVV ALGG+R L+ L   P +       W +D++ LSLSL  + YY
Subjt:  NLLFEVFKHVDARTLATAAGVNKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGC-NHPWGKDEVHLSLSLLSIRYY

Query:  EKM
        E++
Subjt:  EKM

Sequences

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CDS sequence

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ATGAACAACAAAATCAAGAAATTTAAATCAGATTCAAACCAACAAGAAAAACCAGATGAATCTCAACCACAACCCTCTACCTTTGCAAATTTAGACGACAATTTGTTGTT
CGAGGTGTTTAAGCACGTCGATGCAAGGACACTGGCTACCGCCGCCGGCGTCAACAAGCAATGGTTCAAAACAGCTCACGACGAGCGCCTCTGGGAGCTCCTCTGCACCA
AACACTGGACCAACCTTGGCTGTGCTAACCAACAGCTACGCTCCGTCGTTCTTGCGCTTGGTGGCTTCCGTCGATTACATTCTCTTTACCCATTTCCCCCTATGATTGGA
TGTAATCATCCATGGGGCAAAGATGAGGTTCATCTCTCCCTTTCTCTTCTCTCAATTCGCTACTACGAGAAGATGAAGTTTAAAAACAGACCCACATCTTGA

mRNA sequence

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CTTCTTTCTATTTCTTCCCCATTTCCCTTTTTCTCAATAATTTTTCATCTCAAATTCTTCCCCTTTTTCAACCCAATTACCAATGAACAACAAAATCAAGAAATTTAAAT
CAGATTCAAACCAACAAGAAAAACCAGATGAATCTCAACCACAACCCTCTACCTTTGCAAATTTAGACGACAATTTGTTGTTCGAGGTGTTTAAGCACGTCGATGCAAGG
ACACTGGCTACCGCCGCCGGCGTCAACAAGCAATGGTTCAAAACAGCTCACGACGAGCGCCTCTGGGAGCTCCTCTGCACCAAACACTGGACCAACCTTGGCTGTGCTAA
CCAACAGCTACGCTCCGTCGTTCTTGCGCTTGGTGGCTTCCGTCGATTACATTCTCTTTACCCATTTCCCCCTATGATTGGATGTAATCATCCATGGGGCAAAGATGAGG
TTCATCTCTCCCTTTCTCTTCTCTCAATTCGCTACTACGAGAAGATGAAGTTTAAAAACAGACCCACATCTTGAAATCCCAAATAATCTAATGTAAGATCACACCAATTG
GAGGATGTTCTCTCTCTGTGTTGAAATTGATATTATTATTACTCCTTTTTATTCTACCGTATCGGATCGGATGGATGGATTTGTTTGAATTTAGTTGGTTCTAATTTAAC
TAACTTATAGATTTTTC

Protein sequence

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MNNKIKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIG
CNHPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

IVF0025273 (gene) of Melon (IVF77) v1 genome