CuGenDBv2

Gene ID	IVF0025346
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	ATP synthase epsilon chain, chloroplastic
Genome location	chr12:1922157..1922330
RNA-Seq Expression	IVF0025346
Synteny	IVF0025346
Gene Ontology terms	GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) (cellular component) GO:0005524 - ATP binding (molecular function) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function)
InterPro domains	IPR001469 - ATP synthase, F1 complex, delta/epsilon subunit

Homology

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GenBank top hits

e value

%identity

Alignment

ADM63624.1 ATP synthase CF1 epsilon subunit, partial [Abrophyllum ornans]

9.66e-25

85.96

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Query:  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN
        MALMGGFARIGNNE T+LVND EK GDIDPQEAQQTLEIA ANLRK +GKRQ+IEAN
Subjt:  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN

ADM63635.1 ATP synthase CF1 epsilon subunit, partial [Cuttsia viburnea]

1.28e-24

85.96

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Query:  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN
        MALMGGFARIGNNE T+LVND EK GDIDPQEAQQTLEIA ANLRK +GKRQ+IEAN
Subjt:  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN

KAA0067718.1 ATP synthase epsilon subunit [Cucumis melo var. makuwa]

9.90e-27

100

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Query:  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKR
        MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKR
Subjt:  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKR

TYJ97422.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. makuwa]

6.08e-31

100

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Query:  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN
        MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN
Subjt:  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN

YP_009751491.1 CF1 subunit epsilon [Thladiantha dubia]

5.89e-25

89.47

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Query:  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN
        MALMGGFARIGNNE TILVND EK GDIDPQEAQQTLEIA ANLRK QGKRQ IEAN
Subjt:  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN

TrEMBL top hits

e value

%identity

Alignment

A0A5A7VIY7 ATP synthase epsilon subunit (Chloroplast)

8.1e-19

100

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Query:  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKR
        MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKR
Subjt:  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKR

A0A5D3BC62 ATP synthase CF1 epsilon subunit (Chloroplast)

6.0e-22

100

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Query:  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN
        MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN
Subjt:  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN

A0A6H0ENP8 ATP synthase epsilon chain, chloroplastic

4.0e-18

89.47

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Query:  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN
        MALMGGFARIGNNE TILVND EK GDIDPQEAQQTLEIA ANLRK QGKRQ IEAN
Subjt:  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN

E0XEH0 ATP synthase epsilon chain, chloroplastic (Fragment)

9.0e-18

85.96

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Query:  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN
        MALMGGFARIGNNE T+LVND EK GDIDPQEAQQTLEIA ANLRK +GKRQ+IEAN
Subjt:  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN

E0XEI1 ATP synthase epsilon chain, chloroplastic (Fragment)

9.0e-18

85.96

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Query:  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN
        MALMGGFARIGNNE T+LVND EK GDIDPQEAQQTLEIA ANLRK +GKRQ+IEAN
Subjt:  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN

SwissProt top hits

e value

%identity

Alignment

P09468 ATP synthase epsilon chain, chloroplastic

2.7e-19

85.96

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Query:  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN
        MALMGGFARIGNNE TILVND EK  DIDPQEAQQTLEIA ANLRK +GKRQ IEAN
Subjt:  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN

Q06RC3 ATP synthase epsilon chain, chloroplastic

4.6e-19

82.46

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Query:  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN
        +ALMGGFARIGNNE T+LVND E+  DIDPQEAQQTLEIA ANLRK +GKRQRIEAN
Subjt:  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN

Q14FF1 ATP synthase epsilon chain, chloroplastic

4.6e-19

84.21

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Query:  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN
        MALMGGFARIGNNE T+LVND EK  DIDPQEAQQTLEIA ANLRK +GKRQ IEAN
Subjt:  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN

Q332X2 ATP synthase epsilon chain, chloroplastic

4.6e-19

84.21

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Query:  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN
        MALMGGFARIGNNE T+LVND EK GDIDPQEAQQTLEIA A LRK +GKRQ IEAN
Subjt:  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN

Q4VZG9 ATP synthase epsilon chain, chloroplastic

4.1e-20

87.72

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Query:  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN
        MALMGGFARIGNNE TILVND EK  DIDPQEAQQTLEIA ANLRK QGKRQ IEAN
Subjt:  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN

Arabidopsis top hits

e value

%identity

Alignment

ATCG00470.1 ATP synthase epsilon chain

1.9e-20

85.96

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Query:  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN
        MALMGGFARIGNNE TILVND EK  DIDPQEAQQTLEIA ANLRK +GKRQ IEAN
Subjt:  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN

Sequences

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CDS sequence

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ATGGCTTTGATGGGTGGTTTTGCTAGAATAGGGAATAATGAGGCCACTATTTTAGTCAATGATGGGGAGAAGGTTGGTGACATTGATCCACAAGAAGCTCAGCAAACTCT
TGAAATAGCGGTAGCCAACTTGAGGAAAGGTCAGGGCAAGAGACAAAGAATCGAGGCAAATTGA

mRNA sequence

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ATGGCTTTGATGGGTGGTTTTGCTAGAATAGGGAATAATGAGGCCACTATTTTAGTCAATGATGGGGAGAAGGTTGGTGACATTGATCCACAAGAAGCTCAGCAAACTCT
TGAAATAGCGGTAGCCAACTTGAGGAAAGGTCAGGGCAAGAGACAAAGAATCGAGGCAAATTGA

Protein sequence

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MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN

IVF0025346 (gene) of Melon (IVF77) v1 genome