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IVF0025376 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0025376
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein
Genome locationchr01:14359395..14359761
RNA-Seq ExpressionIVF0025376
SyntenyIVF0025376
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036942.1 uncharacterized protein E6C27_scaffold86G00180 [Cucumis melo var. makuwa]3.58e-3478.16Show/hide
Query:  MQSLNNAGWLSFKKSGEKSNV-------NENPKVNAMDDLVEKCKNEVQEIMMPMEALFEGLFKAGYVSQEYLDPNIRYGGYDESRH
        +QSL NAGWLSFKKSGEKSNV       +ENPKVN +D LVEKC+NEV EI+MPMEALFEGLF+AGYVS EYLDPNIRY GYDESRH
Subjt:  MQSLNNAGWLSFKKSGEKSNV-------NENPKVNAMDDLVEKCKNEVQEIMMPMEALFEGLFKAGYVSQEYLDPNIRYGGYDESRH

KAA0040363.1 Gag-pro-like protein [Cucumis melo var. makuwa]8.00e-50100Show/hide
Query:  MQSLNNAGWLSFKKSGEKSNVNENPKVNAMDDLVEKCKNEVQEIMMPMEALFEGLFKAGYVSQEYLDPNIRYGGYDESRH
        MQSLNNAGWLSFKKSGEKSNVNENPKVNAMDDLVEKCKNEVQEIMMPMEALFEGLFKAGYVSQEYLDPNIRYGGYDESRH
Subjt:  MQSLNNAGWLSFKKSGEKSNVNENPKVNAMDDLVEKCKNEVQEIMMPMEALFEGLFKAGYVSQEYLDPNIRYGGYDESRH

KAA0060421.1 uncharacterized protein E6C27_scaffold22G002400 [Cucumis melo var. makuwa]2.61e-3479.31Show/hide
Query:  MQSLNNAGWLSFKKSGEKSNVNENP-------KVNAMDDLVEKCKNEVQEIMMPMEALFEGLFKAGYVSQEYLDPNIRYGGYDESRH
        +QSL NAGWLSFKKSGEK NVNENP       KVNA+D LVEKCKNEV EI+MPMEALFE LF+AGYVS EYLDPNIRY GYDESRH
Subjt:  MQSLNNAGWLSFKKSGEKSNVNENP-------KVNAMDDLVEKCKNEVQEIMMPMEALFEGLFKAGYVSQEYLDPNIRYGGYDESRH

KAA0066096.1 uncharacterized protein E6C27_scaffold21G00870 [Cucumis melo var. makuwa]3.54e-3478.16Show/hide
Query:  MQSLNNAGWLSFKKSGEKSNVNENP-------KVNAMDDLVEKCKNEVQEIMMPMEALFEGLFKAGYVSQEYLDPNIRYGGYDESRH
        +QSL N GWLSFKKSGEK NVNENP       KVN +D LVEKCKNEV EI+MPMEALFEGLF+AGYVS EYLDPNIRY GYDESRH
Subjt:  MQSLNNAGWLSFKKSGEKSNVNENP-------KVNAMDDLVEKCKNEVQEIMMPMEALFEGLFKAGYVSQEYLDPNIRYGGYDESRH

TYK27810.1 uncharacterized protein E5676_scaffold749G00390 [Cucumis melo var. makuwa]1.62e-3580.46Show/hide
Query:  MQSLNNAGWLSFKKSGEKSNVNENP-------KVNAMDDLVEKCKNEVQEIMMPMEALFEGLFKAGYVSQEYLDPNIRYGGYDESRH
        +QSL NAGWLSFKKSGEK NVNENP       KVN +D LVEKCKNEV EIMMPME LFEG+FKAGYVSQEYLDPNIRY GYDESRH
Subjt:  MQSLNNAGWLSFKKSGEKSNVNENP-------KVNAMDDLVEKCKNEVQEIMMPMEALFEGLFKAGYVSQEYLDPNIRYGGYDESRH

TrEMBL top hitse value%identityAlignment
A0A5A7T0H8 Uncharacterized protein2.7e-2878.16Show/hide
Query:  MQSLNNAGWLSFKKSGEKSNV-------NENPKVNAMDDLVEKCKNEVQEIMMPMEALFEGLFKAGYVSQEYLDPNIRYGGYDESRH
        +QSL NAGWLSFKKSGEKSNV       +ENPKVN +D LVEKC+NEV EI+MPMEALFEGLF+AGYVS EYLDPNIRY GYDESRH
Subjt:  MQSLNNAGWLSFKKSGEKSNV-------NENPKVNAMDDLVEKCKNEVQEIMMPMEALFEGLFKAGYVSQEYLDPNIRYGGYDESRH

A0A5A7V3W7 Retrotrans_gag domain-containing protein2.0e-2879.31Show/hide
Query:  MQSLNNAGWLSFKKSGEKSNVN-------ENPKVNAMDDLVEKCKNEVQEIMMPMEALFEGLFKAGYVSQEYLDPNIRYGGYDESRH
        +QSL NAGWLSFKKSGEK NVN       ENPKVNA+D LVEKCKNEV EI+MPMEALFE LF+AGYVS EYLDPNIRY GYDESRH
Subjt:  MQSLNNAGWLSFKKSGEKSNVN-------ENPKVNAMDDLVEKCKNEVQEIMMPMEALFEGLFKAGYVSQEYLDPNIRYGGYDESRH

A0A5A7VIB2 Uncharacterized protein2.7e-2878.16Show/hide
Query:  MQSLNNAGWLSFKKSGEKSNVN-------ENPKVNAMDDLVEKCKNEVQEIMMPMEALFEGLFKAGYVSQEYLDPNIRYGGYDESRH
        +QSL N GWLSFKKSGEK NVN       ENPKVN +D LVEKCKNEV EI+MPMEALFEGLF+AGYVS EYLDPNIRY GYDESRH
Subjt:  MQSLNNAGWLSFKKSGEKSNVN-------ENPKVNAMDDLVEKCKNEVQEIMMPMEALFEGLFKAGYVSQEYLDPNIRYGGYDESRH

A0A5D3DI39 Gag-pro-like protein1.4e-37100Show/hide
Query:  MQSLNNAGWLSFKKSGEKSNVNENPKVNAMDDLVEKCKNEVQEIMMPMEALFEGLFKAGYVSQEYLDPNIRYGGYDESRH
        MQSLNNAGWLSFKKSGEKSNVNENPKVNAMDDLVEKCKNEVQEIMMPMEALFEGLFKAGYVSQEYLDPNIRYGGYDESRH
Subjt:  MQSLNNAGWLSFKKSGEKSNVNENPKVNAMDDLVEKCKNEVQEIMMPMEALFEGLFKAGYVSQEYLDPNIRYGGYDESRH

A0A5D3DX42 Uncharacterized protein3.1e-2980.46Show/hide
Query:  MQSLNNAGWLSFKKSGEKSNVN-------ENPKVNAMDDLVEKCKNEVQEIMMPMEALFEGLFKAGYVSQEYLDPNIRYGGYDESRH
        +QSL NAGWLSFKKSGEK NVN       ENPKVN +D LVEKCKNEV EIMMPME LFEG+FKAGYVSQEYLDPNIRY GYDESRH
Subjt:  MQSLNNAGWLSFKKSGEKSNVN-------ENPKVNAMDDLVEKCKNEVQEIMMPMEALFEGLFKAGYVSQEYLDPNIRYGGYDESRH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAATCTCTAAATAATGCTGGATGGTTAAGCTTCAAAAAATCTGGTGAGAAGTCGAATGTCAATGAAAATCCAAAAGTGAACGCTATGGATGACCTTGTTGAAAAGTG
CAAAAATGAAGTCCAAGAGATAATGATGCCTATGGAAGCACTTTTTGAAGGTCTTTTTAAAGCAGGATATGTTAGTCAGGAATATCTAGACCCCAACATAAGATATGGAG
GGTATGATGAAAGCAGACATTATCCAAAGTACAACAACTTATGGATTCAAAGATACTCGCGGTACATAGAGGACAAGGAAAAGACGAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGCAATCTCTAAATAATGCTGGATGGTTAAGCTTCAAAAAATCTGGTGAGAAGTCGAATGTCAATGAAAATCCAAAAGTGAACGCTATGGATGACCTTGTTGAAAAGTG
CAAAAATGAAGTCCAAGAGATAATGATGCCTATGGAAGCACTTTTTGAAGGTCTTTTTAAAGCAGGATATGTTAGTCAGGAATATCTAGACCCCAACATAAGATATGGAG
GGTATGATGAAAGCAGACATTATCCAAAGTACAACAACTTATGGATTCAAAGATACTCGCGGTACATAGAGGACAAGGAAAAGACGAGATGA
Protein sequenceShow/hide protein sequence
MQSLNNAGWLSFKKSGEKSNVNENPKVNAMDDLVEKCKNEVQEIMMPMEALFEGLFKAGYVSQEYLDPNIRYGGYDESRHYPKYNNLWIQRYSRYIEDKEKTR