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IVF0025387 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0025387
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr01:22753641..22759600
RNA-Seq ExpressionIVF0025387
SyntenyIVF0025387
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035260.1 gag/pol protein [Cucumis melo var. makuwa]4.62e-7878.18Show/hide
Query:  KSNLNTILVVDDLRSVLTEECPQTPTSNVNRTSRIAYDRWVKANEKARVYIIASMSDVLAKKHESLATTKEIMDSLKGVFGQPEWSLRHEAIKYIYTKRM
        KSNLNTILVVDDLR VLT+ECPQTPTSN NRTSR AYDRWVKA+EKA VYI+A+M+DVLAKKH+ LAT K I+D+LK +FG+PEWSLRHEAIKYIYTKRM
Subjt:  KSNLNTILVVDDLRSVLTEECPQTPTSNVNRTSRIAYDRWVKANEKARVYIIASMSDVLAKKHESLATTKEIMDSLKGVFGQPEWSLRHEAIKYIYTKRM

Query:  KEGTSVREHVLDMMMHFNIAE-----------ENSSWKGLSEGEITLKVGTGEMVSAKAVGDLKL
        K+ TSVREHVLDMMMHFNI E           EN+SWK LSEGEITLKVGTGEMVSAKAVG+LK+
Subjt:  KEGTSVREHVLDMMMHFNIAE-----------ENSSWKGLSEGEITLKVGTGEMVSAKAVGDLKL

KAA0035987.1 gag/pol protein [Cucumis melo var. makuwa]1.57e-8875.13Show/hide
Query:  KSNLNTILVVDDLRSVLTEECPQTPTSNVNRTSRIAYDRWVKANEKARVYIIASMSDVLAKKHESLATTKEIMDSLKGVFGQPEWSLRHEAIKYIYTKRM
        K  LNTILVVDDLR VLTEECPQTP SN NRTSR  YDRW+KA+EKA VYI+ASMSDVLAKKHESLATTK+I+DSLKG+FGQ EWS+RHE IKYIYTKRM
Subjt:  KSNLNTILVVDDLRSVLTEECPQTPTSNVNRTSRIAYDRWVKANEKARVYIIASMSDVLAKKHESLATTKEIMDSLKGVFGQPEWSLRHEAIKYIYTKRM

Query:  KEGTSVREHVLDMMMHFNIAE-----------ENSSWKGLSEGEITLKVGTGEMVSAKAVGDLKLFFNDRYIILKNVLRSNTVQQFGSSNLGVLVQL
        KE TS+REHVLDMMMH NIAE           ENSSWK LSEGE+TLKVGTGEMVSAKAVGDLKLFF+DRYI+LKNVL    V+       G+L QL
Subjt:  KEGTSVREHVLDMMMHFNIAE-----------ENSSWKGLSEGEITLKVGTGEMVSAKAVGDLKLFFNDRYIILKNVLRSNTVQQFGSSNLGVLVQL

KAA0054281.1 gag/pol protein [Cucumis melo var. makuwa]6.17e-7775.14Show/hide
Query:  KSNLNTILVVDDLRSVLTEECPQTPTSNVNRTSRIAYDRWVKANEKARVYIIASMSDVLAKKHESLATTKEIMDSLKGVFGQPEWSLRHEAIKYIYTKRM
        KSNLNT L+VDDLR VLTEECPQTP SN NRTSR AYDRW+KANEKA VYI ASMSDVLAK+HESLATTKEIMDSLKG+FGQPEWSLRHEAIKYIYTKRM
Subjt:  KSNLNTILVVDDLRSVLTEECPQTPTSNVNRTSRIAYDRWVKANEKARVYIIASMSDVLAKKHESLATTKEIMDSLKGVFGQPEWSLRHEAIKYIYTKRM

Query:  KEGTSVREHVLDMMMHFNIAE------------------ENSSWKGLSEGEITLKVGTGEMVSAKAVGDLKLFFNDRYIILKNVL
        KE TSVREHVLDMMMHFNIAE                  ENSSWK LS+GEITLKVGTGEMV AKA   L++       IL NVL
Subjt:  KEGTSVREHVLDMMMHFNIAE------------------ENSSWKGLSEGEITLKVGTGEMVSAKAVGDLKLFFNDRYIILKNVL

KAA0061994.1 gag/pol protein [Cucumis melo var. makuwa]6.14e-8480.47Show/hide
Query:  VVDDLRSVLTEECPQTPTSNVNRTSRIAYDRWVKANEKARVYIIASMSDVLAKKHESLATTKEIMDSLKGVFGQPEWSLRHEAIKYIYTKRMKEGTSVRE
        +VDDLR  LTEECPQTPT N NRTS++AYDRW+K +EK RVYI+ASM DVLAKKHESLAT KEIMDSLKG+FGQ EWSLR EAIKYIYTKRMKEGTSV+E
Subjt:  VVDDLRSVLTEECPQTPTSNVNRTSRIAYDRWVKANEKARVYIIASMSDVLAKKHESLATTKEIMDSLKGVFGQPEWSLRHEAIKYIYTKRMKEGTSVRE

Query:  HVLDMMMHFNIAE-----------ENSSWKGLSEGEITLKVGTGEMVSAKAVGDLKLFFNDRYIILKNV
        HVLDMMMHFNIAE           +NSSWK LSEGEITLKVGT EMVSAKAVGDLKLFFNDRYI+LKNV
Subjt:  HVLDMMMHFNIAE-----------ENSSWKGLSEGEITLKVGTGEMVSAKAVGDLKLFFNDRYIILKNV

TYK29682.1 gag/pol protein [Cucumis melo var. makuwa]5.27e-8284.24Show/hide
Query:  KSNLNTILVVDDLRSVLTEECPQTPTSNVNRTSRIAYDRWVKANEKARVYIIASMSDVLAKKHESLATTKEIMDSLKGVFGQPEWSLRHEAIKYIYTKRM
        KSNLNTILVVDDLR +LTEEC QTPT N NR SR AYDRW+KANEKARVYI+ASMSDVLAKK+ESLAT KEIMDSLKG+FGQPEWSLRHEAIKYIYTKRM
Subjt:  KSNLNTILVVDDLRSVLTEECPQTPTSNVNRTSRIAYDRWVKANEKARVYIIASMSDVLAKKHESLATTKEIMDSLKGVFGQPEWSLRHEAIKYIYTKRM

Query:  KEGTSVREHVLDMMMHFNIAEEN-----------SSWKGLSEGEITLKVGTGEMVSAKAVGDLKL
        KEGTSVREHVLDMMMHFNIAE N           SSWK LSEGEITLKVGTGEMVSA AVGDLKL
Subjt:  KEGTSVREHVLDMMMHFNIAEEN-----------SSWKGLSEGEITLKVGTGEMVSAKAVGDLKL

TrEMBL top hitse value%identityAlignment
A0A5A7UL66 Gag/pol protein5.0e-6475.14Show/hide
Query:  KSNLNTILVVDDLRSVLTEECPQTPTSNVNRTSRIAYDRWVKANEKARVYIIASMSDVLAKKHESLATTKEIMDSLKGVFGQPEWSLRHEAIKYIYTKRM
        KSNLNT L+VDDLR VLTEECPQTP SN NRTSR AYDRW+KANEKA VYI ASMSDVLAK+HESLATTKEIMDSLKG+FGQPEWSLRHEAIKYIYTKRM
Subjt:  KSNLNTILVVDDLRSVLTEECPQTPTSNVNRTSRIAYDRWVKANEKARVYIIASMSDVLAKKHESLATTKEIMDSLKGVFGQPEWSLRHEAIKYIYTKRM

Query:  KEGTSVREHVLDMMMHFNIAE------------------ENSSWKGLSEGEITLKVGTGEMVSAKAVGDLKLFFNDRYIILKNVL
        KE TSVREHVLDMMMHFNIAE                  ENSSWK LS+GEITLKVGTGEMV AKA   L++       IL NVL
Subjt:  KEGTSVREHVLDMMMHFNIAE------------------ENSSWKGLSEGEITLKVGTGEMVSAKAVGDLKLFFNDRYIILKNVL

A0A5A7V3W4 Gag/pol protein1.7e-6780.47Show/hide
Query:  VVDDLRSVLTEECPQTPTSNVNRTSRIAYDRWVKANEKARVYIIASMSDVLAKKHESLATTKEIMDSLKGVFGQPEWSLRHEAIKYIYTKRMKEGTSVRE
        +VDDLR  LTEECPQTPT N NRTS++AYDRW+K +EK RVYI+ASM DVLAKKHESLAT KEIMDSLKG+FGQ EWSLR EAIKYIYTKRMKEGTSV+E
Subjt:  VVDDLRSVLTEECPQTPTSNVNRTSRIAYDRWVKANEKARVYIIASMSDVLAKKHESLATTKEIMDSLKGVFGQPEWSLRHEAIKYIYTKRMKEGTSVRE

Query:  HVLDMMMHFNIAE-----------ENSSWKGLSEGEITLKVGTGEMVSAKAVGDLKLFFNDRYIILKNV
        HVLDMMMHFNIAE           +NSSWK LSEGEITLKVGT EMVSAKAVGDLKLFFNDRYI+LKNV
Subjt:  HVLDMMMHFNIAE-----------ENSSWKGLSEGEITLKVGTGEMVSAKAVGDLKLFFNDRYIILKNV

A0A5D3DE90 Gag/pol protein2.3e-6461.18Show/hide
Query:  KSNLNTILVVDDLRSVLTEECPQTPTSNVNRTSRIAYDRWVKANEKARVYIIASMSDVLAKKHESLATTKEIMDSLKGVFGQPEWSLRHEAIKYIYTKRM
        KSNLNTILVVD L  VLTEECPQTP+SN NR SR AYDRW+K NEKA VYI+ASM DVLAKKHESLAT KEIMDSLKG+FGQP+WSLRHEAIKYIYTKRM
Subjt:  KSNLNTILVVDDLRSVLTEECPQTPTSNVNRTSRIAYDRWVKANEKARVYIIASMSDVLAKKHESLATTKEIMDSLKGVFGQPEWSLRHEAIKYIYTKRM

Query:  KEGTSVREHVLDMMMHFNIAE----------------------------------------------------------------ENSSWKGLSEGEITL
        KEGTSVREHV+DMMMHFNIAE                                                                E SS K LS+G ITL
Subjt:  KEGTSVREHVLDMMMHFNIAE----------------------------------------------------------------ENSSWKGLSEGEITL

Query:  KVGTGEMVSAKAVGDLKLFFNDRYIILKNVLRSNTVQ
        KVGTGEMVSAKAVGDLKLF NDRYI+LKNVL    V+
Subjt:  KVGTGEMVSAKAVGDLKLFFNDRYIILKNVLRSNTVQ

A0A5D3E173 Gag/pol protein5.7e-6884.24Show/hide
Query:  KSNLNTILVVDDLRSVLTEECPQTPTSNVNRTSRIAYDRWVKANEKARVYIIASMSDVLAKKHESLATTKEIMDSLKGVFGQPEWSLRHEAIKYIYTKRM
        KSNLNTILVVDDLR +LTEEC QTPT N NR SR AYDRW+KANEKARVYI+ASMSDVLAKK+ESLAT KEIMDSLKG+FGQPEWSLRHEAIKYIYTKRM
Subjt:  KSNLNTILVVDDLRSVLTEECPQTPTSNVNRTSRIAYDRWVKANEKARVYIIASMSDVLAKKHESLATTKEIMDSLKGVFGQPEWSLRHEAIKYIYTKRM

Query:  KEGTSVREHVLDMMMHFNIAEEN-----------SSWKGLSEGEITLKVGTGEMVSAKAVGDLKL
        KEGTSVREHVLDMMMHFNIAE N           SSWK LSEGEITLKVGTGEMVSA AVGDLKL
Subjt:  KEGTSVREHVLDMMMHFNIAEEN-----------SSWKGLSEGEITLKVGTGEMVSAKAVGDLKL

A0A5D3E3F1 Gag/pol protein8.6e-7275.13Show/hide
Query:  KSNLNTILVVDDLRSVLTEECPQTPTSNVNRTSRIAYDRWVKANEKARVYIIASMSDVLAKKHESLATTKEIMDSLKGVFGQPEWSLRHEAIKYIYTKRM
        K  LNTILVVDDLR VLTEECPQTP SN NRTSR  YDRW+KA+EKA VYI+ASMSDVLAKKHESLATTK+I+DSLKG+FGQ EWS+RHE IKYIYTKRM
Subjt:  KSNLNTILVVDDLRSVLTEECPQTPTSNVNRTSRIAYDRWVKANEKARVYIIASMSDVLAKKHESLATTKEIMDSLKGVFGQPEWSLRHEAIKYIYTKRM

Query:  KEGTSVREHVLDMMMHFNIAE-----------ENSSWKGLSEGEITLKVGTGEMVSAKAVGDLKLFFNDRYIILKNVLRSNTVQQFGSSNLGVLVQL
        KE TS+REHVLDMMMH NIAE           ENSSWK LSEGE+TLKVGTGEMVSAKAVGDLKLFF+DRYI+LKNVL    V+       G+L QL
Subjt:  KEGTSVREHVLDMMMHFNIAE-----------ENSSWKGLSEGEITLKVGTGEMVSAKAVGDLKLFFNDRYIILKNVLRSNTVQQFGSSNLGVLVQL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATCAAATCTTAACACAATACTAGTGGTTGATGATTTAAGATCTGTCTTAACTGAGGAATGTCCTCAAACTCCTACCTCAAATGTAAACCGAACTAGTCGGATAGC
ATATGATCGATGGGTAAAAGCAAATGAAAAAGCCCGTGTCTACATCATTGCTAGCATGTCTGATGTTTTAGCAAAGAAACATGAATCCTTAGCCACGACTAAAGAGATTA
TGGATTCATTAAAAGGAGTGTTTGGGCAACCAGAATGGTCCCTAAGACACGAAGCAATAAAATACATTTACACTAAGCGTATGAAGGAGGGGACCTCTGTTAGAGAACAT
GTCTTGGACATGATGATGCACTTCAATATTGCTGAGGAAAATAGTTCTTGGAAAGGGCTTTCTGAGGGCGAGATCACTCTCAAAGTTGGAACTGGAGAAATGGTCTCAGC
TAAAGCAGTGGGAGATTTGAAGTTGTTTTTTAATGATAGATATATCATACTCAAGAATGTCTTGCGTTCAAACACTGTCCAGCAGTTCGGAAGCTCAAATTTGGGCGTTC
TAGTACAACTAGGATGCCTTGCCATGGTTGTACGGATTACAGGAACCATGCCTCAAGGTAGACCTCGAAAGCACCCTGATGCAGAAGCTAGTAACGCTGCTAGAGAAGCA
GCGATGGGAAGTGGGGAGTCTGATGCCGAATCTAGTCGCCCTCATGTTGAGGGGAATGTGGAAGAACAATTGCTTGATAGATTGGCTCAAAGATTAATTTTGGGGATTAG
ATTGGCACAATCAGACTCTGAAAAGAAGTATGGGATTGAGCGATTGAAAGCCTTAGGTGCTACTACTTTTGTGGGGACAACAATCCCGTCGATGCTGAAGAATGGCTTAC
TTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAATCAAATCTTAACACAATACTAGTGGTTGATGATTTAAGATCTGTCTTAACTGAGGAATGTCCTCAAACTCCTACCTCAAATGTAAACCGAACTAGTCGGATAGC
ATATGATCGATGGGTAAAAGCAAATGAAAAAGCCCGTGTCTACATCATTGCTAGCATGTCTGATGTTTTAGCAAAGAAACATGAATCCTTAGCCACGACTAAAGAGATTA
TGGATTCATTAAAAGGAGTGTTTGGGCAACCAGAATGGTCCCTAAGACACGAAGCAATAAAATACATTTACACTAAGCGTATGAAGGAGGGGACCTCTGTTAGAGAACAT
GTCTTGGACATGATGATGCACTTCAATATTGCTGAGGAAAATAGTTCTTGGAAAGGGCTTTCTGAGGGCGAGATCACTCTCAAAGTTGGAACTGGAGAAATGGTCTCAGC
TAAAGCAGTGGGAGATTTGAAGTTGTTTTTTAATGATAGATATATCATACTCAAGAATGTCTTGCGTTCAAACACTGTCCAGCAGTTCGGAAGCTCAAATTTGGGCGTTC
TAGTACAACTAGGATGCCTTGCCATGGTTGTACGGATTACAGGAACCATGCCTCAAGGTAGACCTCGAAAGCACCCTGATGCAGAAGCTAGTAACGCTGCTAGAGAAGCA
GCGATGGGAAGTGGGGAGTCTGATGCCGAATCTAGTCGCCCTCATGTTGAGGGGAATGTGGAAGAACAATTGCTTGATAGATTGGCTCAAAGATTAATTTTGGGGATTAG
ATTGGCACAATCAGACTCTGAAAAGAAGTATGGGATTGAGCGATTGAAAGCCTTAGGTGCTACTACTTTTGTGGGGACAACAATCCCGTCGATGCTGAAGAATGGCTTAC
TTTAA
Protein sequenceShow/hide protein sequence
MKSNLNTILVVDDLRSVLTEECPQTPTSNVNRTSRIAYDRWVKANEKARVYIIASMSDVLAKKHESLATTKEIMDSLKGVFGQPEWSLRHEAIKYIYTKRMKEGTSVREH
VLDMMMHFNIAEENSSWKGLSEGEITLKVGTGEMVSAKAVGDLKLFFNDRYIILKNVLRSNTVQQFGSSNLGVLVQLGCLAMVVRITGTMPQGRPRKHPDAEASNAAREA
AMGSGESDAESSRPHVEGNVEEQLLDRLAQRLILGIRLAQSDSEKKYGIERLKALGATTFVGTTIPSMLKNGLL