CuGenDBv2

Gene ID	IVF0025392
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotrans_gag domain-containing protein
Genome location	chr05:21037234..21037578
RNA-Seq Expression	IVF0025392
Synteny	IVF0025392
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0030430 - host cell cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036942.1 uncharacterized protein E6C27_scaffold86G00180 [Cucumis melo var. makuwa]

1.80e-61

92.92

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Query:  MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSGKHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETP
        MIGNA+TNFSDIIVIGERIEYGIKH RLAEA TEYGGIKKGTISKKKEGEVHAIGFPNSGKHKSIFGQRK+EQNFPSYISNVSHIPYN+YV A+T SETP
Subjt:  MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSGKHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETP

Query:  KPVNSNSPRPFVQ
        KPVNSNSPRPFVQ
Subjt:  KPVNSNSPRPFVQ

KAA0036950.1 uncharacterized protein E6C27_scaffold86G00300 [Cucumis melo var. makuwa]

1.29e-61

92.92

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Query:  MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSGKHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETP
        MIGNA+TNFSDIIVIGERIEYGIKH RLAEA TEYGGIKKGTISKKKEGEVHAIGFPNSGKHKSIFGQRK+EQNFPSYISNVSHIPYN+YV A+T SETP
Subjt:  MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSGKHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETP

Query:  KPVNSNSPRPFVQ
        KPVNSNSPRPFVQ
Subjt:  KPVNSNSPRPFVQ

TYK04059.1 uncharacterized protein E5676_scaffold3019G00010 [Cucumis melo var. makuwa]

1.94e-60

91.15

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Query:  MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSGKHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETP
        MIGNA+TNFSDIIVIGERIEYGIKH RLAE  TEYGGIKKGTISKKKEGEVHAIGFPNSGKHKSIFGQRK+EQNFPSYISNVSHIPYN+YV A+  SETP
Subjt:  MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSGKHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETP

Query:  KPVNSNSPRPFVQ
        KPVNSNSPRPFVQ
Subjt:  KPVNSNSPRPFVQ

TYK23633.1 uncharacterized protein E5676_scaffold4336G00020 [Cucumis melo var. makuwa]

6.55e-62

90.27

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Query:  MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSGKHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETP
        MIGNA+TNFSDIIVIGERIEYGIKH RLAEA TEYGGIKKGTISKKKEGEVH IGFPNSGKHKSIF QRK+EQNFPSYISNVSHIPYN+YV A+T SET 
Subjt:  MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSGKHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETP

Query:  KPVNSNSPRPFVQ
        KPVNSNSPRPFVQ
Subjt:  KPVNSNSPRPFVQ

XP_008465589.1 PREDICTED: uncharacterized protein LOC103503225 [Cucumis melo]

2.68e-61

89.38

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Query:  MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSGKHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETP
        MIGNA+TNFS+IIVIGERIEYGIKH RLAEA TEYGGIKKGTISKKKEGEVHAIGFPNSGKHKSIFGQRK+EQNFPSYISNVSHIPYN+YV A+T SE P
Subjt:  MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSGKHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETP

Query:  KPVNSNSPRPFVQ
        K  NSNSPRPFVQ
Subjt:  KPVNSNSPRPFVQ

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T0H8 Uncharacterized protein

3.8e-52

92.92

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Query:  MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSGKHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETP
        MIGNA+TNFSDIIVIGERIEYGIKH RLAEA TEYGGIKKGTISKKKEGEVHAIGFPNSGKHKSIFGQRK+EQNFPSYISNVSHIPYN+YV A+T SETP
Subjt:  MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSGKHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETP

Query:  KPVNSNSPRPFVQ
        KPVNSNSPRPFVQ
Subjt:  KPVNSNSPRPFVQ

A0A5A7T0R1 Uncharacterized protein

3.8e-52

92.92

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Query:  MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSGKHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETP
        MIGNA+TNFSDIIVIGERIEYGIKH RLAEA TEYGGIKKGTISKKKEGEVHAIGFPNSGKHKSIFGQRK+EQNFPSYISNVSHIPYN+YV A+T SETP
Subjt:  MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSGKHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETP

Query:  KPVNSNSPRPFVQ
        KPVNSNSPRPFVQ
Subjt:  KPVNSNSPRPFVQ

A0A5A7T1W2 Retrotrans_gag domain-containing protein

5.5e-51

91.15

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Query:  MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSGKHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETP
        MIGNA+TNFSDIIVIGERIEYGIKH RLAEA TEYGGIKKGTISKKKEGEVHAIGFPNSGKHKSIFG RK+EQNFPSYI+NVSHIPYN+YV A+T SETP
Subjt:  MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSGKHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETP

Query:  KPVNSNSPRPFVQ
        KPVNSNSPRPFVQ
Subjt:  KPVNSNSPRPFVQ

A0A5A7T5W6 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein

3.2e-51

92.04

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Query:  MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSGKHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETP
        MIGNA+TNFSDIIVIGERIEYGIKH RLAEA TEYG IKKGTISKKKEGEVHAIGFPNSGKHKSIFGQRK+EQNFPSYISNVSHIPYN+YV A+T SETP
Subjt:  MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSGKHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETP

Query:  KPVNSNSPRPFVQ
        KPVNSNSPRPFVQ
Subjt:  KPVNSNSPRPFVQ

A0A5D3C117 Uncharacterized protein

7.2e-51

91.15

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Query:  MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSGKHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETP
        MIGNA+TNFSDIIVIGERIEYGIKH RLAE  TEYGGIKKGTISKKKEGEVHAIGFPNSGKHKSIFGQRK+EQNFPSYISNVSHIPYN+YV A+  SETP
Subjt:  MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSGKHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETP

Query:  KPVNSNSPRPFVQ
        KPVNSNSPRPFVQ
Subjt:  KPVNSNSPRPFVQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGATTGGTAATGCAACAACCAATTTTTCTGACATTATAGTTATTGGCGAAAGAATTGAATATGGGATAAAGCACCAGAGGTTAGCAGAGGCTATAACTGAATATGGTGG
AATAAAGAAAGGAACAATATCTAAGAAGAAAGAAGGAGAGGTTCATGCAATTGGTTTTCCTAATTCAGGGAAGCACAAATCAATTTTTGGTCAGAGAAAACATGAGCAAA
ACTTTCCGTCATATATAAGCAATGTTTCTCATATCCCTTATAATAACTATGTACGAGCCAATACCTTCTCTGAAACTCCAAAACCCGTTAACTCAAATTCTCCTCGACCA
TTTGTACAGGATTAA

mRNA sequence

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Protein sequence

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MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSGKHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETPKPVNSNSPRP
FVQD

IVF0025392 (gene) of Melon (IVF77) v1 genome