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IVF0025430 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0025430
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr06:18359371..18359796
RNA-Seq ExpressionIVF0025430
SyntenyIVF0025430
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054705.1 retrotransposon protein [Cucumis melo var. makuwa]2.55e-5868.79Show/hide
Query:  MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVLECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTI
        M + NE+FP VYSQGID+SQ+DVRASR S  SEGR  SS SKRKRGSQR+ +++ IH+ L+ TN+QL+ I EWPAC LANDNHV  EFF IL EMPELT 
Subjt:  MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVLECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTI

Query:  LDRSLLQRHLLSHMGDMRGFKQMPNDERASFCRVILRDISR
        LDR+LLQRHLLS M D+RGF  MP DER  FCRV+LRDI R
Subjt:  LDRSLLQRHLLSHMGDMRGFKQMPNDERASFCRVILRDISR

KAA0060654.1 retrotransposon protein [Cucumis melo var. makuwa]1.28e-92100Show/hide
Query:  MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVLECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTI
        MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVLECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTI
Subjt:  MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVLECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTI

Query:  LDRSLLQRHLLSHMGDMRGFKQMPNDERASFCRVILRDISR
        LDRSLLQRHLLSHMGDMRGFKQMPNDERASFCRVILRDISR
Subjt:  LDRSLLQRHLLSHMGDMRGFKQMPNDERASFCRVILRDISR

KAA0065782.1 retrotransposon protein [Cucumis melo var. makuwa]1.21e-6071.63Show/hide
Query:  MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVLECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTI
        +P+ N+EFPSVY+QGI++SQEDVRAS+ S   EGRV SS SKRKRGSQ+E E++VI+M  ECTNDQLK++ EWPA  LANDNHV Q+FF IL  MPELT 
Subjt:  MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVLECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTI

Query:  LDRSLLQRHLLSHMGDMRGFKQMPNDERASFCRVILRDISR
        LDR+LLQRHLLS M D+RGF QMP+DER SFC VILRDISR
Subjt:  LDRSLLQRHLLSHMGDMRGFKQMPNDERASFCRVILRDISR

TYK01823.1 retrotransposon protein [Cucumis melo var. makuwa]2.13e-5868.09Show/hide
Query:  MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVLECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTI
        M + NE+F  VYSQGID+SQ+DVRASR S  SEGR  SS SKRKRGSQR+ E++ IH+ L+ TN+QL+ I EWPA  LANDNHV  EFF IL EMPELT 
Subjt:  MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVLECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTI

Query:  LDRSLLQRHLLSHMGDMRGFKQMPNDERASFCRVILRDISR
        LDR+LLQRHLLS M D+RGF  MP DER  FCRV+LRDI R
Subjt:  LDRSLLQRHLLSHMGDMRGFKQMPNDERASFCRVILRDISR

TYK29656.1 retrotransposon protein [Cucumis melo var. makuwa]2.11e-6372.34Show/hide
Query:  MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVLECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTI
        M +RNEEFP VYSQGID+SQ+DV ASR S  SEGR ESS SKRKRGSQREV+++ IH+ L+ TN+QLKMI EWPAC L NDNHV  EFF IL EMPELT 
Subjt:  MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVLECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTI

Query:  LDRSLLQRHLLSHMGDMRGFKQMPNDERASFCRVILRDISR
        LDR+LLQRHLLS M D+RGF  MP DER  FCRV+LRDI+R
Subjt:  LDRSLLQRHLLSHMGDMRGFKQMPNDERASFCRVILRDISR

TrEMBL top hitse value%identityAlignment
A0A5A7V026 Retrotransposon protein4.9e-73100Show/hide
Query:  MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVLECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTI
        MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVLECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTI
Subjt:  MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVLECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTI

Query:  LDRSLLQRHLLSHMGDMRGFKQMPNDERASFCRVILRDISR
        LDRSLLQRHLLSHMGDMRGFKQMPNDERASFCRVILRDISR
Subjt:  LDRSLLQRHLLSHMGDMRGFKQMPNDERASFCRVILRDISR

A0A5A7V948 Retrotransposon protein8.6e-4668.09Show/hide
Query:  MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVLECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTI
        M + NEEFP VYSQGID+SQ+DVRA R SC SEGR  SS SKRKRGSQ++ ++K IH+ L  TN+QL+ I EWPA  LANDNHVH +FF IL EMPELT 
Subjt:  MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVLECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTI

Query:  LDRSLLQRHLLSHMGDMRGFKQMPNDERASFCRVILRDISR
        LDR+LLQRHLLS M ++RGF  MP DER  FCRV+LRDI+R
Subjt:  LDRSLLQRHLLSHMGDMRGFKQMPNDERASFCRVILRDISR

A0A5D3B6Y0 Retrotransposon protein5.1e-4668.79Show/hide
Query:  MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVLECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTI
        M + NE+FP VYSQGID+SQ+DVRASR S  SEGR  SS SKRKRGSQR+ +++ IH+ L+ TN+QL+ I EWPAC LANDNHV  EFF IL EMPELT 
Subjt:  MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVLECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTI

Query:  LDRSLLQRHLLSHMGDMRGFKQMPNDERASFCRVILRDISR
        LDR+LLQRHLLS M D+RGF  MP DER  FCRV+LRDI R
Subjt:  LDRSLLQRHLLSHMGDMRGFKQMPNDERASFCRVILRDISR

A0A5D3BD15 Retrotransposon protein2.1e-4771.63Show/hide
Query:  MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVLECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTI
        +P+ N+EFPSVY+QGI++SQEDVRAS+ S   EGRV SS SKRKRGSQ+E E++VI+M  ECTNDQLK++ EWPA  LANDNHV Q+FF IL  MPELT 
Subjt:  MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVLECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTI

Query:  LDRSLLQRHLLSHMGDMRGFKQMPNDERASFCRVILRDISR
        LDR+LLQRHLLS M D+RGF QMP+DER SFC VILRDISR
Subjt:  LDRSLLQRHLLSHMGDMRGFKQMPNDERASFCRVILRDISR

A0A5D3E168 Retrotransposon protein1.1e-4872.34Show/hide
Query:  MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVLECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTI
        M +RNEEFP VYSQGID+SQ+DV ASR S  SEGR ESS SKRKRGSQREV+++ IH+ L+ TN+QLKMI EWPAC L NDNHV  EFF IL EMPELT 
Subjt:  MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVLECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTI

Query:  LDRSLLQRHLLSHMGDMRGFKQMPNDERASFCRVILRDISR
        LDR+LLQRHLLS M D+RGF  MP DER  FCRV+LRDI+R
Subjt:  LDRSLLQRHLLSHMGDMRGFKQMPNDERASFCRVILRDISR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCAATAGGAACGAGGAGTTCCCATCAGTCTACAGCCAAGGGATTGACATATCCCAGGAGGATGTACGCGCATCACGATCTTCTTGTGTGTCTGAAGGTAGGGTCGA
ATCAAGCAAATCGAAGAGGAAGAGGGGAAGCCAGCGTGAGGTCGAGATTAAAGTCATACATATGGTGCTTGAGTGTACAAATGACCAACTCAAGATGATTACGGAGTGGC
CTGCATGCCCTCTTGCTAATGACAACCATGTGCACCAAGAATTCTTCCTCATATTGCATGAGATGCCGGAACTAACCATTTTGGATAGGTCATTGTTGCAAAGGCACCTC
TTGTCTCATATGGGCGACATGCGAGGTTTCAAACAGATGCCAAATGATGAGAGGGCGAGCTTTTGCAGAGTCATCCTACGCGACATCTCAAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGCCCAATAGGAACGAGGAGTTCCCATCAGTCTACAGCCAAGGGATTGACATATCCCAGGAGGATGTACGCGCATCACGATCTTCTTGTGTGTCTGAAGGTAGGGTCGA
ATCAAGCAAATCGAAGAGGAAGAGGGGAAGCCAGCGTGAGGTCGAGATTAAAGTCATACATATGGTGCTTGAGTGTACAAATGACCAACTCAAGATGATTACGGAGTGGC
CTGCATGCCCTCTTGCTAATGACAACCATGTGCACCAAGAATTCTTCCTCATATTGCATGAGATGCCGGAACTAACCATTTTGGATAGGTCATTGTTGCAAAGGCACCTC
TTGTCTCATATGGGCGACATGCGAGGTTTCAAACAGATGCCAAATGATGAGAGGGCGAGCTTTTGCAGAGTCATCCTACGCGACATCTCAAGATAG
Protein sequenceShow/hide protein sequence
MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVLECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTILDRSLLQRHL
LSHMGDMRGFKQMPNDERASFCRVILRDISR