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IVF0025444 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0025444
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr06:5714277..5714704
RNA-Seq ExpressionIVF0025444
SyntenyIVF0025444
Gene Ontology termsGO:0006388 - tRNA splicing, via endonucleolytic cleavage and ligation (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003972 - RNA ligase (ATP) activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047411.1 gag/pol protein [Cucumis melo var. makuwa]1.47e-4473.04Show/hide
Query:  ALPTSGERSFGVRNLRARIPWTKFFHRGVKSGFTTVSLFCVVLVISASSFGTHTPRTSIYILGIVPHPFSQSIGREASSLEGELRCNPKRLKRWPMLFQR
        +L TS  R   +R +RAR+PWT+FFHRGVK+  TTVSLFCVVLVI AS+FGTHTPRTS+YILGIVPH F QSI R+ASSLEGELRC+PKR KRWPMLFQR
Subjt:  ALPTSGERSFGVRNLRARIPWTKFFHRGVKSGFTTVSLFCVVLVISASSFGTHTPRTSIYILGIVPHPFSQSIGREASSLEGELRCNPKRLKRWPMLFQR

Query:  MSIARLGSETTENAF
        ++ A L SETTE  F
Subjt:  MSIARLGSETTENAF

KAA0047414.1 gag/pol protein [Cucumis melo var. makuwa]1.29e-2546.67Show/hide
Query:  ERSFGVRN--LRARIPWTKFFHRGVKSGFTTVS--------------LFCVVLVI------------------------SASSFGTHTPRTSIYILGIVP
         R+FGVR+  +R R+P T+FFHRG +                     LF +V                           S SSF THTPRTS+YI GIVP
Subjt:  ERSFGVRN--LRARIPWTKFFHRGVKSGFTTVS--------------LFCVVLVI------------------------SASSFGTHTPRTSIYILGIVP

Query:  HPFSQSIGREASSLEGELRCNPKRLKRWPMLFQRMSIARLGSETTENAFQ
        HPF QSIGREASSLE +LRCNP++ K+WPMLFQR++  R  S TTENAFQ
Subjt:  HPFSQSIGREASSLEGELRCNPKRLKRWPMLFQRMSIARLGSETTENAFQ

KAA0051943.1 hypothetical protein E6C27_scaffold60G004060 [Cucumis melo var. makuwa]1.98e-2472.22Show/hide
Query:  ISASSFGTHTPRTSIYILGIVPHPFSQSIGREASSLEGELRCNPKRLKRWPMLFQRMSIARLGSETTENAFQ
        +S +SFGTHTPRTS+YI GIVP  FSQSIG +ASSLE EL+CNPKR KRWP+ FQR+  AR+  ETTENAFQ
Subjt:  ISASSFGTHTPRTSIYILGIVPHPFSQSIGREASSLEGELRCNPKRLKRWPMLFQRMSIARLGSETTENAFQ

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]8.26e-2669.05Show/hide
Query:  IPWTKFFHRGVKSGFTTVSLFCVVLVISASSFGTHTPRTSIYILGIVPHPFSQSIGREASSLEGELRCNPKRLKRWPMLFQRMS
        +P T+FFHRG+KSG  TVSLFCV+LVISASSF TH  R+S YI  IVPH FSQSI +E S L GELRCN +R KRW MLFQR++
Subjt:  IPWTKFFHRGVKSGFTTVSLFCVVLVISASSFGTHTPRTSIYILGIVPHPFSQSIGREASSLEGELRCNPKRLKRWPMLFQRMS

KAA0065520.1 retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo var. makuwa]7.78e-3568.27Show/hide
Query:  RNLRARIPWTKFFHRGVKSGFTTVSLFCVVLVISASSFGTHTPRTSIYILGIVPHPFSQSIGREASSLEGELRCNPKRLKRWPMLFQRMSIARLGSETTE
        R +R R+PWT+FF+ GVK+G T VS FCVVLVISASSF THT RTS+YI GIV H FSQSIGREASS +GE RCNPKR K WP+LFQR++ AR  S   +
Subjt:  RNLRARIPWTKFFHRGVKSGFTTVSLFCVVLVISASSFGTHTPRTSIYILGIVPHPFSQSIGREASSLEGELRCNPKRLKRWPMLFQRMSIARLGSETTE

Query:  NAFQ
        +AFQ
Subjt:  NAFQ

TrEMBL top hitse value%identityAlignment
A0A5A7U7P6 Uncharacterized protein8.1e-2172.22Show/hide
Query:  ISASSFGTHTPRTSIYILGIVPHPFSQSIGREASSLEGELRCNPKRLKRWPMLFQRMSIARLGSETTENAFQ
        +S +SFGTHTPRTS+YI GIVP  FSQSIG +ASSLE EL+CNPKR KRWP+ FQR+  AR+  ETTENAFQ
Subjt:  ISASSFGTHTPRTSIYILGIVPHPFSQSIGREASSLEGELRCNPKRLKRWPMLFQRMSIARLGSETTENAFQ

A0A5A7VEB1 Retrotransposon protein, putative, Ty3-gypsy subclass, expressed5.6e-3068.27Show/hide
Query:  RNLRARIPWTKFFHRGVKSGFTTVSLFCVVLVISASSFGTHTPRTSIYILGIVPHPFSQSIGREASSLEGELRCNPKRLKRWPMLFQRMSIARLGSETTE
        R +R R+PWT+FF+ GVK+G T VS FCVVLVISASSF THT RTS+YI GIV H FSQSIGREASS +GE RCNPKR K WP+LFQR++ AR  S   +
Subjt:  RNLRARIPWTKFFHRGVKSGFTTVSLFCVVLVISASSFGTHTPRTSIYILGIVPHPFSQSIGREASSLEGELRCNPKRLKRWPMLFQRMSIARLGSETTE

Query:  NAFQ
        +AFQ
Subjt:  NAFQ

A0A5A7VGQ5 Uncharacterized protein4.3e-2269.05Show/hide
Query:  IPWTKFFHRGVKSGFTTVSLFCVVLVISASSFGTHTPRTSIYILGIVPHPFSQSIGREASSLEGELRCNPKRLKRWPMLFQRMS
        +P T+FFHRG+KSG  TVSLFCV+LVISASSF TH  R+S YI  IVPH FSQSI +E S L GELRCN +R KRW MLFQR++
Subjt:  IPWTKFFHRGVKSGFTTVSLFCVVLVISASSFGTHTPRTSIYILGIVPHPFSQSIGREASSLEGELRCNPKRLKRWPMLFQRMS

A0A5D3CUK8 Gag/pol protein7.3e-3873.04Show/hide
Query:  ALPTSGERSFGVRNLRARIPWTKFFHRGVKSGFTTVSLFCVVLVISASSFGTHTPRTSIYILGIVPHPFSQSIGREASSLEGELRCNPKRLKRWPMLFQR
        +L TS  R   +R +RAR+PWT+FFHRGVK+  TTVSLFCVVLVI AS+FGTHTPRTS+YILGIVPH F QSI R+ASSLEGELRC+PKR KRWPMLFQR
Subjt:  ALPTSGERSFGVRNLRARIPWTKFFHRGVKSGFTTVSLFCVVLVISASSFGTHTPRTSIYILGIVPHPFSQSIGREASSLEGELRCNPKRLKRWPMLFQR

Query:  MSIARLGSETTENAF
        ++ A L SETTE  F
Subjt:  MSIARLGSETTENAF

A0A5D3CV18 Gag/pol protein5.6e-2246.98Show/hide
Query:  RSFGVRN--LRARIPWTKFFHRGVKSGFTTVS--------------LFCVVLVI------------------------SASSFGTHTPRTSIYILGIVPH
        R+FGVR+  +R R+P T+FFHRG +                     LF +V                           S SSF THTPRTS+YI GIVPH
Subjt:  RSFGVRN--LRARIPWTKFFHRGVKSGFTTVS--------------LFCVVLVI------------------------SASSFGTHTPRTSIYILGIVPH

Query:  PFSQSIGREASSLEGELRCNPKRLKRWPMLFQRMSIARLGSETTENAFQ
        PF QSIGREASSLE +LRCNP++ K+WPMLFQR++  R  S TTENAFQ
Subjt:  PFSQSIGREASSLEGELRCNPKRLKRWPMLFQRMSIARLGSETTENAFQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTATGCTCTTCCAACAAGTGGCGAACGCTCGTTCGGTGTTAGAAACCTGCGAGCGAGAATACCCTGGACTAAGTTTTTCCATCGTGGGGTGAAAAGCGGTTTTAC
CACGGTCTCTTTGTTTTGTGTTGTATTGGTCATAAGCGCTTCGAGCTTCGGGACTCATACTCCGAGAACTTCAATTTACATTCTTGGCATCGTCCCTCACCCGTTTTCCC
AAAGTATAGGTCGAGAAGCGAGCTCGTTGGAGGGAGAACTAAGGTGCAATCCGAAACGATTGAAAAGATGGCCAATGCTCTTCCAACGAATGTCGATCGCTCGTCTGGGG
TCAGAAACCACTGAGAATGCATTTCAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTATGCTCTTCCAACAAGTGGCGAACGCTCGTTCGGTGTTAGAAACCTGCGAGCGAGAATACCCTGGACTAAGTTTTTCCATCGTGGGGTGAAAAGCGGTTTTAC
CACGGTCTCTTTGTTTTGTGTTGTATTGGTCATAAGCGCTTCGAGCTTCGGGACTCATACTCCGAGAACTTCAATTTACATTCTTGGCATCGTCCCTCACCCGTTTTCCC
AAAGTATAGGTCGAGAAGCGAGCTCGTTGGAGGGAGAACTAAGGTGCAATCCGAAACGATTGAAAAGATGGCCAATGCTCTTCCAACGAATGTCGATCGCTCGTCTGGGG
TCAGAAACCACTGAGAATGCATTTCAGTAA
Protein sequenceShow/hide protein sequence
MAYALPTSGERSFGVRNLRARIPWTKFFHRGVKSGFTTVSLFCVVLVISASSFGTHTPRTSIYILGIVPHPFSQSIGREASSLEGELRCNPKRLKRWPMLFQRMSIARLG
SETTENAFQ