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IVF0025467 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0025467
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass, expressed
Genome locationchr04:21921320..21921595
RNA-Seq ExpressionIVF0025467
SyntenyIVF0025467
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047409.1 retrotransposon protein, putative, Ty3-gypsy sub-class [Cucumis melo var. makuwa]6.86e-1137.06Show/hide
Query:  MPRTQFLHRWVKSGPATVSLFC-------VGH-----------------------------------KCFELRDL---------------YSKDFSPHSW
        MP++QF +R VKSG  TVSL C       +GH                                   K    R L               YS+DFS HSW
Subjt:  MPRTQFLHRWVKSGPATVSLFC-------VGH-----------------------------------KCFELRDL---------------YSKDFSPHSW

Query:  HRRSPVSAKNRSESELVGGRTKVQPETIEKMAHALPTSGERSS
        +  S V  K  S +EL GGRTKVQP  IEKM +AL  SGERSS
Subjt:  HRRSPVSAKNRSESELVGGRTKVQPETIEKMAHALPTSGERSS

KAA0051945.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]5.50e-1558.46Show/hide
Query:  MPRTQFLHRWVKSGPATVSLFCVGHKCFELRDLYSKDFSPHSWHRRSPVSAKNRSESELVGGRTK
        MP T+FL+   KSGP+TV LF +GHKCFEL D Y ++F+ HSWH  S + +K RS SEL GGR K
Subjt:  MPRTQFLHRWVKSGPATVSLFCVGHKCFELRDLYSKDFSPHSWHRRSPVSAKNRSESELVGGRTK

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]3.77e-1139.86Show/hide
Query:  TQFLHRWVKSGPATVSLFCV---------------------------------------GHKC------------------FELRDLYSKDFSPHSWHRR
        TQF+HR VKS PATVSLF V                                       G K                   FEL+D  SKDFS HS HR 
Subjt:  TQFLHRWVKSGPATVSLFCV---------------------------------------GHKC------------------FELRDLYSKDFSPHSWHRR

Query:  SPVSAKNRSESELVGGRTKVQPETIEKMAHALPTSGERSSGVR
        S V AK RS  ELV  RTKVQ   IEKMA+AL  SG  S G R
Subjt:  SPVSAKNRSESELVGGRTKVQPETIEKMAHALPTSGERSSGVR

KAA0065520.1 retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo var. makuwa]4.23e-2252.29Show/hide
Query:  QFLHRWVKSGPATVSLFCVGHKCFELRDLY---------------------------SKDFSPHSWHRRSPVSAKNRSESELVGGRTKVQPETIEKMAHA
        Q+ +R VKS P  V LFCVGHK FELRD Y                           S+ FS + WHR SPV  K RS SE++ GRTKVQPETIE MA+A
Subjt:  QFLHRWVKSGPATVSLFCVGHKCFELRDLY---------------------------SKDFSPHSWHRRSPVSAKNRSESELVGGRTKVQPETIEKMAHA

Query:  LPTSGERSS
        LPTSGERSS
Subjt:  LPTSGERSS

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]1.19e-1270.59Show/hide
Query:  KDFSPHSWHRRSPVSAKNRSESELVGGRTKVQPETIEKMAHALPTSGERSS
        KDFS H WH  SP+  + RS SELVG RTKVQ  TIEK+A+ALPTSGERSS
Subjt:  KDFSPHSWHRRSPVSAKNRSESELVGGRTKVQPETIEKMAHALPTSGERSS

TrEMBL top hitse value%identityAlignment
A0A5A7U1Q6 Retrotransposon protein, putative, Ty3-gypsy sub-class1.5e-0664.15Show/hide
Query:  YSKDFSPHSWHRRSPVSAKNRSESELVGGRTKVQPETIEKMAHALPTSGERSS
        YS+DFS HSW+  S V  K  S +EL GGRTKVQP  IEKM +AL  SGERSS
Subjt:  YSKDFSPHSWHRRSPVSAKNRSESELVGGRTKVQPETIEKMAHALPTSGERSS

A0A5A7VEB1 Retrotransposon protein, putative, Ty3-gypsy subclass, expressed1.4e-1752.29Show/hide
Query:  QFLHRWVKSGPATVSLFCVGHKCFELRDLY---------------------------SKDFSPHSWHRRSPVSAKNRSESELVGGRTKVQPETIEKMAHA
        Q+ +R VKS P  V LFCVGHK FELRD Y                           S+ FS + WHR SPV  K RS SE++ GRTKVQPETIE MA+A
Subjt:  QFLHRWVKSGPATVSLFCVGHKCFELRDLY---------------------------SKDFSPHSWHRRSPVSAKNRSESELVGGRTKVQPETIEKMAHA

Query:  LPTSGERSS
        LPTSGERSS
Subjt:  LPTSGERSS

A0A5A7VGQ5 Uncharacterized protein4.6e-0838.46Show/hide
Query:  TQFLHRWVKSGPATVSLFCV---------------------------------------------------------GHKCFELRDLYSKDFSPHSWHRR
        TQF+HR VKS PATVSLF V                                                             FEL+D  SKDFS HS HR 
Subjt:  TQFLHRWVKSGPATVSLFCV---------------------------------------------------------GHKCFELRDLYSKDFSPHSWHRR

Query:  SPVSAKNRSESELVGGRTKVQPETIEKMAHALPTSGERSSGVR
        S V AK RS  ELV  RTKVQ   IEKMA+AL  SG  S G R
Subjt:  SPVSAKNRSESELVGGRTKVQPETIEKMAHALPTSGERSSGVR

A0A5D3BG85 Uncharacterized protein4.2e-0970.59Show/hide
Query:  KDFSPHSWHRRSPVSAKNRSESELVGGRTKVQPETIEKMAHALPTSGERSS
        KDFS H WH  SP+  + RS SELVG RTKVQ  TIEK+A+ALPTSGERSS
Subjt:  KDFSPHSWHRRSPVSAKNRSESELVGGRTKVQPETIEKMAHALPTSGERSS

A0A5D3CKZ2 Pentatricopeptide repeat-containing protein1.3e-1058.46Show/hide
Query:  MPRTQFLHRWVKSGPATVSLFCVGHKCFELRDLYSKDFSPHSWHRRSPVSAKNRSESELVGGRTK
        MP T+FL+   KSGP+TV LF +GHKCFEL D Y ++F+ HSWH  S + +K RS SEL GGR K
Subjt:  MPRTQFLHRWVKSGPATVSLFCVGHKCFELRDLYSKDFSPHSWHRRSPVSAKNRSESELVGGRTK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCAGGACTCAGTTTTTGCATCGCTGGGTAAAAAGCGGCCCTGCAACGGTTTCTTTGTTTTGTGTTGGTCATAAGTGCTTCGAGCTTCGGGACTTGTACTCCAAGGA
CTTCAGTCCACACTCCTGGCATCGTCGCTCACCTGTTTCCGCAAAGAATAGGTCAGAAAGCGAGCTCGTTGGAGGGAGAACTAAGGTGCAACCCGAAACGATCGAAAAGA
TGGCCCATGCTCTTCCAACGAGTGGCGAACGCTCGTCCGGTGTTAGAAACCAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCCAGGACTCAGTTTTTGCATCGCTGGGTAAAAAGCGGCCCTGCAACGGTTTCTTTGTTTTGTGTTGGTCATAAGTGCTTCGAGCTTCGGGACTTGTACTCCAAGGA
CTTCAGTCCACACTCCTGGCATCGTCGCTCACCTGTTTCCGCAAAGAATAGGTCAGAAAGCGAGCTCGTTGGAGGGAGAACTAAGGTGCAACCCGAAACGATCGAAAAGA
TGGCCCATGCTCTTCCAACGAGTGGCGAACGCTCGTCCGGTGTTAGAAACCAGTAA
Protein sequenceShow/hide protein sequence
MPRTQFLHRWVKSGPATVSLFCVGHKCFELRDLYSKDFSPHSWHRRSPVSAKNRSESELVGGRTKVQPETIEKMAHALPTSGERSSGVRNQ