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IVF0025533 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0025533
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionSWIB domain-containing protein
Genome locationchr05:4318938..4333477
RNA-Seq ExpressionIVF0025533
SyntenyIVF0025533
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR003121 - SWIB/MDM2 domain
IPR019835 - SWIB domain
IPR036885 - SWIB/MDM2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN55149.2 hypothetical protein Csa_012337 [Cucumis sativus]5.70e-6093Show/hide
Query:  MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK
        M  +RMKMA+TDNPKKLANLIDLVNLPSTLREFVG SQISRLGCFKCVWSYIKTNNLQDPTNKNVV+CDEKLKSILLGKPKVELAELPALIKLHFPKN K
Subjt:  MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK
XP_008449303.1 PREDICTED: upstream activation factor subunit spp27 [Cucumis melo]6.08e-66100Show/hide
Query:  MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK
        MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK
Subjt:  MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK
XP_022928748.1 upstream activation factor subunit UAF30 [Cucurbita moschata]1.28e-5892.78Show/hide
Query:  RRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK
        +RMK A+TDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK VWSYIKTNNLQDPTNKNVV+CDEKLKSILLGK K+ELAELPALIKLHFPKNPK
Subjt:  RRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK
XP_031739586.1 upstream activation factor subunit spp27 [Cucumis sativus]3.27e-6193Show/hide
Query:  MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK
        M  +RMKMA+TDNPKKLANLIDLVNLPSTLREFVG SQISRLGCFKCVWSYIKTNNLQDPTNKNVV+CDEKLKSILLGKPKVELAELPALIKLHFPKN K
Subjt:  MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK
XP_038882021.1 upstream activation factor subunit spp27 [Benincasa hispida]9.74e-6396.91Show/hide
Query:  RRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK
        +RMKMA+TDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVV+CDEKLKSILLGKPKVELAELPALIKLHFPKNPK
Subjt:  RRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK
TrEMBL top hitse value%identityAlignment
A0A0A0L2E1 SWIB domain-containing protein1.8e-4593Show/hide
Query:  MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK
        M  +RMKMA+TDNPKKLANLIDLVNLPSTLREFVG SQISRLGCFKCVWSYIKTNNLQDPTNKNVV+CDEKLKSILLGKPKVELAELPALIKLHFPKN K
Subjt:  MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK
A0A1S3BL41 upstream activation factor subunit spp274.5e-49100Show/hide
Query:  MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK
        MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK
Subjt:  MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK
A0A6J1ELR1 upstream activation factor subunit UAF301.7e-4391Show/hide
Query:  MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK
        M  +RMK A+TDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK VWSYIKTNNLQDPTNKNVV+CDEKLKSILLGK K+ELAELPALIKLHFPKNPK
Subjt:  MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK
A0A6J1HWJ0 protein TRI1 isoform X12.8e-4391Show/hide
Query:  MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK
        M  +RMK A+TDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK VWSYIKTNNLQDPTNKNVV+CDEKL+SILLGK KVELAELPALIKLHFPKNPK
Subjt:  MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK
A0A6J1HY33 upstream activation factor subunit UAF30 isoform X22.8e-4391Show/hide
Query:  MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK
        M  +RMK A+TDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK VWSYIKTNNLQDPTNKNVV+CDEKL+SILLGK KVELAELPALIKLHFPKNPK
Subjt:  MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK
SwissProt top hitse value%identityAlignment
O74503 Upstream activation factor subunit spp271.4e-0746.15Show/hide
Query:  VNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSI
        + L   L EF+G  Q+SR    K +W YIK ++LQDP +K  ++CD+KLKS+
Subjt:  VNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSI
Q05024 Protein TRI14.6e-0630Show/hide
Query:  RMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLH
        + K    D+P   +  +  V L + L++F+G  ++ R    K +W YIK ++LQ+P ++  ++CDEK++ I  GK K+ +  +  L+  H
Subjt:  RMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLH
Q08747 Upstream activation factor subunit UAF309.2e-0733.77Show/hide
Query:  VNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK
        V L  +L   +G+ +++R    + +W+YIK +NLQ+P NK  ++CDEKL+ ++LGK    + E+  ++  H  +  K
Subjt:  VNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK
Arabidopsis top hitse value%identityAlignment
AT1G31760.1 SWIB/MDM2 domain superfamily protein6.7e-1344.93Show/hide
Query:  LREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKN
        L  F G+ +++R    K VW Y+K +NLQ+P NK  + CD+KLK+I  GK KV + E+  L+  HFPK+
Subjt:  LREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKN
AT2G35605.1 SWIB/MDM2 domain superfamily protein7.2e-1541.77Show/hide
Query:  LIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKN
        ++ +V +   L  F+G++++SR    K +W YIK NNLQ+P NK  ++CDE+LK+I  GK  V   E+  L+  HFPK+
Subjt:  LIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKN
AT3G03590.1 SWIB/MDM2 domain superfamily protein4.8e-1135.48Show/hide
Query:  AMTDNPKK----LANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPK
        A +D+P K       +  +  +   L +F+G  + SR    K +W+YIK+++LQ+P +K  + CDE LK I  GK KV   E+  L+  HF K
Subjt:  AMTDNPKK----LANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPK
AT4G26810.1 SWIB/MDM2 domain superfamily protein2.6e-4181Show/hide
Query:  MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK
        M  +R+K A+TDNPKKL NLIDLVNLPSTLR FVGQSQISRLGCF  VWSYIKTNNLQDP NKNVV+CDEKLKSILLGK +VEL +LP+LIKLHFPK  K
Subjt:  MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK
AT4G26810.2 SWIB/MDM2 domain superfamily protein2.6e-4181Show/hide
Query:  MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK
        M  +R+K A+TDNPKKL NLIDLVNLPSTLR FVGQSQISRLGCF  VWSYIKTNNLQDP NKNVV+CDEKLKSILLGK +VEL +LP+LIKLHFPK  K
Subjt:  MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGATACGACGGATGAAGATGGCCATGACAGATAACCCAAAGAAGCTCGCAAACTTGATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTC
CCAAATTTCTCGTCTTGGCTGTTTCAAGTGTGTGTGGTCATATATTAAAACCAACAACCTTCAGGATCCCACCAACAAGAATGTGGTCGTTTGTGATGAGAAGTTAAAAA
GTATATTGCTAGGCAAGCCCAAGGTTGAACTAGCCGAACTTCCTGCACTGATTAAATTACATTTCCCCAAAAATCCCAAGTGA
mRNA sequenceShow/hide mRNA sequence
CCCCCCCAATAAAAACCTTCTCCTCCTTTTTGTAACCCCTCGGCTGGTCTGCAACCAGCCACGCCACCGCTCGTCTCTTTCCGACGCCATCTCAAGGGGCTGCAGTCGGT
AAACGCCCTTTTCCCTATTCCTGTATCTCAATAGGTTCTGTTCTGTGAGCTCCATCCGATCGCCGACATTTCAGATCAGGTCCGCCCTGGAGTCTGCGGTGTGCAAATTG
TATTGCCGTCAGAAGCCCCTGCCGGTTGCCGAAGTTTTGAATTTTGGTGGAGGAACAAACTAGTTGTGCACAAAAATGACGATACGACGGATGAAGATGGCCATGACAGA
TAACCCAAAGAAGCTCGCAAACTTGATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTCCCAAATTTCTCGTCTTGGCTGTTTCAAGTGTGTGT
GGTCATATATTAAAACCAACAACCTTCAGGATCCCACCAACAAGAATGTGGTCGTTTGTGATGAGAAGTTAAAAAGTATATTGCTAGGCAAGCCCAAGGTTGAACTAGCC
GAACTTCCTGCACTGATTAAATTACATTTCCCCAAAAATCCCAAGTGAGCTATGCTTGCAGTTTAGCCTCTGGCAGCTCGGAATGAGGTCTTCAAGTCAGTCGCCAATGG
TTAGAATGTTTAGCCTCAATTTTGTATAATTGTCCTACTAGGTTTTTTTTTACTATGTGTTAAAATAAACCTTCAACGCTACTTTTGTCATTGTAATTTTGGTTCATATA
CTTTTAAGAAAGATTTAGAGAAAATACTTAGTATCACTAGTAAATTTTACTAATGTCCTAAAATTAAATTTATTTCTTGATTAGGTTTTTCTATATTTTTAGGACAATTA
TATATTTTTAGGACA
Protein sequenceShow/hide protein sequence
MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK