CuGenDBv2

Gene ID	IVF0025542
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	protein LOW PSII ACCUMULATION 1, chloroplastic
Genome location	chr04:11922185..11925295
RNA-Seq Expression	IVF0025542
Synteny	IVF0025542
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR021883 - Protein LOW PSII ACCUMULATION 1-like

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004152010.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus]

4.75e-206

87.28

Show/hide

Query:  MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV
        MAVSL T  +SSFNNIAPPPHFSPTPSHNA DFKF RRS   VHRKTVSFSSSPRLPVSLRF VYGRRNLAN+I SAADKPEISSTAKIRSEVLSPFRSV
Subjt:  MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV

Query:  RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLT----------------------LRGIAR
        RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDIL+GLG+DFGAVALFAFLYFRENNAKNAQLARL+                      LRGIAR
Subjt:  RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLT----------------------LRGIAR

Query:  LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
        LVICAGPESF+IEAFKSSEPFTE+LLERGVLVVPLATDVTTLNFEFD+REEVKDIT+KRK+LWRLTPVYMTEWSAWLDEQKKLAGV+SDSPVYLSLRMDG
Subjt:  LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG

Query:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

XP_008447350.1 PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis melo]

7.04e-224

93.49

Show/hide

Query:  MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV
        MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV
Subjt:  MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV

Query:  RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARL----------------------TLRGIAR
        RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARL                      TLRGIAR
Subjt:  RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARL----------------------TLRGIAR

Query:  LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
        LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
Subjt:  LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG

Query:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

XP_022131239.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Momordica charantia]

1.63e-178

77.51

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Query:  MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV
        M VS++   +SSFNN  PPPH   T SHNA +FKF R  C  VH KTV FSS P L  SLR     RRNLAN+  SAA+KPEISSTAKIRSEVLSPFRSV
Subjt:  MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV

Query:  RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLT----------------------LRGIAR
        RMFFYLTFIASGTLGGLIATTQLL ALANSSRA++VPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARL+                      LRGIAR
Subjt:  RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLT----------------------LRGIAR

Query:  LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
        LVICAGPESF++EAF+SSEPFTEQLLERGV+VVP ATDV++LNFEFDERE++KD+T+KRK+LWRLTPVYM EWSAWLDEQKKLAGVS++SPVYLSLRMDG
Subjt:  LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG

Query:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

XP_022963501.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata]

4.82e-179

77.22

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Query:  MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV
        M VS++  I+ S NN   PPH S T SHNA + KFCRR C HVHR  VSF+  P +  SLR+  Y RRNLA+   SA+DKPEISSTAKIRSEVLSPFRSV
Subjt:  MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV

Query:  RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARL----------------------TLRGIAR
        RMFFYLTFIASGTLGGLIATTQLL ALANSSRA+EVPDIL GLGIDFGAVALFAFLYFRENNAKNAQLARL                      TLRGIAR
Subjt:  RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARL----------------------TLRGIAR

Query:  LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
        LVICAGPESF++EAFK+SEPFTE+LLERGVLV+P ATD ++LNFEFDEREE+KDIT+KRK+LWRLTPVYM++WSAWLD+QKKLAGVSSDSPVYLSLRMDG
Subjt:  LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG

Query:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

XP_038888898.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida]

6.47e-189

82.54

Show/hide

Query:  MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV
        MAVSLST  +SS NNI  PPHFS T      DFKF RR C HVHRKT+SF+SSP LP SL    Y RRNLAN+  SAADKPEISSTAKIRSEVLSPFRSV
Subjt:  MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV

Query:  RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARL----------------------TLRGIAR
        RMFFYLTFIASGTLGGLIATTQLL ALANSSRA+EVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARL                      TLRGIAR
Subjt:  RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARL----------------------TLRGIAR

Query:  LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
        LVICAGPESF++EAFKSSEPFTE+LLERGVLVVPLATDV+TLNFEFDEREEVKD+T+KRK+LWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
Subjt:  LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG

Query:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L902 Uncharacterized protein

6.9e-160

87.28

Show/hide

Query:  MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV
        MAVSL T  +SSFNNIAPPPHFSPTPSHNA DFKF RRS   VHRKTVSFSSSPRLPVSLRF VYGRRNLAN+I SAADKPEISSTAKIRSEVLSPFRSV
Subjt:  MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV

Query:  RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLT----------------------LRGIAR
        RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDIL+GLG+DFGAVALFAFLYFRENNAKNAQLARL+                      LRGIAR
Subjt:  RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLT----------------------LRGIAR

Query:  LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
        LVICAGPESF+IEAFKSSEPFTE+LLERGVLVVPLATDVTTLNFEFD+REEVKDIT+KRK+LWRLTPVYMTEWSAWLDEQKKLAGV+SDSPVYLSLRMDG
Subjt:  LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG

Query:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

A0A1S3BHU5 protein LOW PSII ACCUMULATION 1, chloroplastic

1.9e-173

93.49

Show/hide

Query:  MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV
        MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV
Subjt:  MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV

Query:  RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARL----------------------TLRGIAR
        RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARL                      TLRGIAR
Subjt:  RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARL----------------------TLRGIAR

Query:  LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
        LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
Subjt:  LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG

Query:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

A0A5D3BG35 Protein LOW PSII ACCUMULATION 1

1.9e-173

93.49

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Query:  MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV
        MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV
Subjt:  MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV

Query:  RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARL----------------------TLRGIAR
        RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARL                      TLRGIAR
Subjt:  RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARL----------------------TLRGIAR

Query:  LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
        LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
Subjt:  LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG

Query:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

A0A6J1BP58 protein LOW PSII ACCUMULATION 1, chloroplastic

6.7e-139

77.51

Show/hide

Query:  MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV
        M VS++   +SSFNN  PPPH   T SHNA +FKF R  C  VH KTV FSS P L  SLR     RRNLAN+  SAA+KPEISSTAKIRSEVLSPFRSV
Subjt:  MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV

Query:  RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARL----------------------TLRGIAR
        RMFFYLTFIASGTLGGLIATTQLL ALANSSRA++VPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARL                      +LRGIAR
Subjt:  RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARL----------------------TLRGIAR

Query:  LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
        LVICAGPESF++EAF+SSEPFTEQLLERGV+VVP ATDV++LNFEFDERE++KD+T+KRK+LWRLTPVYM EWSAWLDEQKKLAGVS++SPVYLSLRMDG
Subjt:  LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG

Query:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

A0A6J1HGA1 protein LOW PSII ACCUMULATION 1, chloroplastic

7.9e-140

77.54

Show/hide

Query:  LSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFF
        +S  I+ S NN   PPH S T SHNA + KFCRR C HVHR  VSF+  P +  SLR+  Y RRNLA+   SA+DKPEISSTAKIRSEVLSPFRSVRMFF
Subjt:  LSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFF

Query:  YLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARL----------------------TLRGIARLVIC
        YLTFIASGTLGGLIATTQLL ALANSSRA+EVPDIL GLGIDFGAVALFAFLYFRENNAKNAQLARL                      TLRGIARLVIC
Subjt:  YLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARL----------------------TLRGIARLVIC

Query:  AGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRG
        AGPESF++EAFK+SEPFTE+LLERGVLV+P ATD ++LNFEFDEREE+KDIT+KRK+LWRLTPVYM++WSAWLD+QKKLAGVSSDSPVYLSLRMDGRVRG
Subjt:  AGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRG

Query:  SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

SwissProt top hits

e value

%identity

Alignment

Q9SRY4 Protein LOW PSII ACCUMULATION 1, chloroplastic

9.9e-23

28.68

Show/hide

Query:  KIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLT---------------
        K+ SEV +PFR VR FFY  F A+  +       +L+ A+     A  + +      I+ G + +   L+  EN  +  Q+ ++T               
Subjt:  KIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLT---------------

Query:  -------LRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPL---------------------ATDVTTLNFEFDEREEVKDITSKRKK--LWR
               LR   R VI AG +  V  A + ++ F  +LL RGVL+VP+                     AT + ++  +FD R +     SK K    ++
Subjt:  -------LRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPL---------------------ATDVTTLNFEFDEREEVKDITSKRKK--LWR

Query:  LTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGL
           V   EW  W+ +Q+   GV+    VY+ LR+DGRVR SG G P W  +  +LPP+  + S L
Subjt:  LTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGL

Arabidopsis top hits

e value

%identity

Alignment

AT1G02910.1 tetratricopeptide repeat (TPR)-containing protein

7.1e-24

28.68

Show/hide

Query:  KIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLT---------------
        K+ SEV +PFR VR FFY  F A+  +       +L+ A+     A  + +      I+ G + +   L+  EN  +  Q+ ++T               
Subjt:  KIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLT---------------

Query:  -------LRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPL---------------------ATDVTTLNFEFDEREEVKDITSKRKK--LWR
               LR   R VI AG +  V  A + ++ F  +LL RGVL+VP+                     AT + ++  +FD R +     SK K    ++
Subjt:  -------LRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPL---------------------ATDVTTLNFEFDEREEVKDITSKRKK--LWR

Query:  LTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGL
           V   EW  W+ +Q+   GV+    VY+ LR+DGRVR SG G P W  +  +LPP+  + S L
Subjt:  LTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGL

AT4G28740.1 FUNCTIONS IN: molecular_function unknown

3.6e-92

56.7

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Query:  HFSPTPSHNAPDFKFCRRSCFHVHRKTVSFS-SSPRLPVSLRFHVYGRRNLANYIYSAADKP-EISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLI
        H S    + A +    RR   H HR+ + FS  + RL ++ +          N +  AAD+P EIS+ A+IRSEVLSPFRSVRMFFYL FIASG+LGGLI
Subjt:  HFSPTPSHNAPDFKFCRRSCFHVHRKTVSFS-SSPRLPVSLRFHVYGRRNLANYIYSAADKP-EISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLI

Query:  ATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLT-----------------------LRGIARLVICAGPESFVIEAFKS
        AT++L+GALAN +R+ EV +I+KGLG+D GA +LFAFLYF EN  KNAQ+ARL+                       LRG+ARLVICAGP  F+ EAFK 
Subjt:  ATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLT-----------------------LRGIARLVICAGPESFVIEAFKS

Query:  SEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEV-KDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALV
        S+ +T+ L+ERGV+VV  ATD  +   EFDE +   ++++ +RKKLWR+TPV++ EW  WL+EQKKLA VSSDSPVYLSLR+DGRVR SGVGYPPW A V
Subjt:  SEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEV-KDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALV

Query:  AQLPPVKGLWSGLLDGMDGRV
        AQLPPVKG+W+GLLDGMDGRV
Subjt:  AQLPPVKGLWSGLLDGMDGRV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGGTTTCCCTTTCCACTCTCATCGTTTCTTCCTTCAACAACATTGCTCCACCTCCTCATTTCTCTCCCACGCCCTCCCATAACGCTCCGGATTTCAAATTCTGCCG
CCGCAGCTGCTTCCATGTTCATCGAAAGACGGTATCATTTAGTTCTAGCCCTAGGCTACCAGTTTCGCTTCGTTTTCATGTATACGGCAGACGGAATTTGGCTAACTACA
TTTACTCAGCTGCTGATAAACCGGAAATCAGTTCCACAGCCAAGATAAGAAGTGAAGTTCTGTCTCCATTTCGGTCTGTTCGGATGTTCTTTTATCTCACTTTCATTGCT
AGTGGTACATTGGGAGGACTGATAGCAACCACTCAATTGCTTGGTGCATTGGCAAACTCATCAAGAGCTGATGAAGTCCCTGATATTCTAAAAGGACTTGGAATAGATTT
TGGAGCCGTAGCTCTTTTTGCATTTCTTTATTTCAGAGAAAACAATGCAAAAAATGCTCAATTGGCTAGACTCACTTTGCGTGGGATTGCTCGTCTGGTAATCTGTGCTG
GCCCTGAATCCTTTGTCATTGAAGCTTTTAAATCAAGCGAACCTTTCACTGAACAACTTCTAGAACGGGGTGTTTTAGTTGTACCCCTTGCCACAGATGTGACTACACTG
AATTTTGAGTTTGATGAACGAGAAGAGGTGAAGGATATAACCTCAAAAAGGAAAAAACTCTGGCGCTTGACTCCAGTTTACATGACTGAGTGGTCGGCGTGGTTAGATGA
ACAAAAGAAGTTGGCTGGAGTCTCCTCTGATTCTCCCGTGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGTGGTGTTGGCTATCCTCCATGGAATGCTCTTG
TAGCACAATTACCACCTGTAAAAGGACTATGGTCAGGTCTTCTAGATGGGATGGATGGCAGAGTTCTTTGA

mRNA sequence

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Protein sequence

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MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIA
SGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTL
NFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

IVF0025542 (gene) of Melon (IVF77) v1 genome