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IVF0025562 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0025562
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr11:22987270..22987695
RNA-Seq ExpressionIVF0025562
SyntenyIVF0025562
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047011.1 retrotransposon protein [Cucumis melo var. makuwa]1.02e-8895.74Show/hide
Query:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTS
        MGDGN+DFPPVYSQG+D+SQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPA NLANDNHVRTEFF ILREMPELTS
Subjt:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTS

Query:  LDRALLQRHLLSCMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLS MDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSCMDDLRGFVLMPEDEREGFCRVLLRDIER

KAA0054705.1 retrotransposon protein [Cucumis melo var. makuwa]3.48e-95100Show/hide
Query:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTS
        MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTS
Subjt:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTS

Query:  LDRALLQRHLLSCMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLSCMDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSCMDDLRGFVLMPEDEREGFCRVLLRDIER

KAA0058875.1 retrotransposon protein [Cucumis melo var. makuwa]6.19e-8995.74Show/hide
Query:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTS
        MGDGNEDFPPVYSQG+D+SQDDVRASRPSRA EGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPA NLANDNHVRTEFFCILREMPELTS
Subjt:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTS

Query:  LDRALLQRHLLSCMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLS MDDLRGFVLMPEDERE FCRVLLRDIER
Subjt:  LDRALLQRHLLSCMDDLRGFVLMPEDEREGFCRVLLRDIER

KAA0065692.1 retrotransposon protein [Cucumis melo var. makuwa]9.57e-8994.33Show/hide
Query:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTS
        MGDGNEDFPPVYSQG+D+SQDDVRASRPSRASEGRTGSSGSKRKRGSQRDF++EAIHLALDQTNEQLR+IAEWPA NLANDNHVRTEFF ILREMPELTS
Subjt:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTS

Query:  LDRALLQRHLLSCMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLS MDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSCMDDLRGFVLMPEDEREGFCRVLLRDIER

KAA0065821.1 retrotransposon protein [Cucumis melo var. makuwa]6.71e-8995.04Show/hide
Query:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTS
        MGDGN+DFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDF++EAIHLALDQTNEQLRQIAEWPA NLANDNHVRT+FFCILREMPELT+
Subjt:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTS

Query:  LDRALLQRHLLSCMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLS MDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSCMDDLRGFVLMPEDEREGFCRVLLRDIER

TrEMBL top hitse value%identityAlignment
A0A5A7U086 Retrotransposon protein9.5e-6995.74Show/hide
Query:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTS
        MGDGN+DFPPVYSQG+D+SQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPA NLANDNHVRTEFF ILREMPELTS
Subjt:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTS

Query:  LDRALLQRHLLSCMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLS MDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSCMDDLRGFVLMPEDEREGFCRVLLRDIER

A0A5A7UZ66 Retrotransposon protein4.3e-6995.74Show/hide
Query:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTS
        MGDGNEDFPPVYSQG+D+SQDDVRASRPSRA EGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPA NLANDNHVRTEFFCILREMPELTS
Subjt:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTS

Query:  LDRALLQRHLLSCMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLS MDDLRGFVLMPEDERE FCRVLLRDIER
Subjt:  LDRALLQRHLLSCMDDLRGFVLMPEDEREGFCRVLLRDIER

A0A5A7VJG4 Retrotransposon protein7.3e-6995.04Show/hide
Query:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTS
        MGDGN+DFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDF++EAIHLALDQTNEQLRQIAEWPA NLANDNHVRT+FFCILREMPELT+
Subjt:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTS

Query:  LDRALLQRHLLSCMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLS MDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSCMDDLRGFVLMPEDEREGFCRVLLRDIER

A0A5D3B6Y0 Retrotransposon protein9.8e-74100Show/hide
Query:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTS
        MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTS
Subjt:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTS

Query:  LDRALLQRHLLSCMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLSCMDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSCMDDLRGFVLMPEDEREGFCRVLLRDIER

A0A5D3B9L6 Retrotransposon protein1.6e-6893.62Show/hide
Query:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTS
        MGDGN+DFPPVYSQG+D+SQDDVRASRPSRASEGRTGSSGSKRKRGSQRDF++EAIHLALDQTNEQLRQIAEWPA NLANDNHVRT+FFCILREMPELT+
Subjt:  MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTS

Query:  LDRALLQRHLLSCMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLS MDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSCMDDLRGFVLMPEDEREGFCRVLLRDIER

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGGATGGAAACGAGGACTTCCCGCCCGTATACAGCCAGGGAATTGACCTATCGCAGGATGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGACCGG
ATCGAGTGGATCGAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGATGTTGAAGCGATACATTTGGCGCTCGACCAAACAAACGAGCAACTCAGGCAGATTGCGGAGTGGC
CTGCATGCAACCTTGCAAATGACAACCATGTGCGCACGGAATTTTTCTGCATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTT
TTGTCTTGTATGGACGACCTTCGGGGTTTCGTACTCATGCCTGAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACGAGACATAGAGAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGGATGGAAACGAGGACTTCCCGCCCGTATACAGCCAGGGAATTGACCTATCGCAGGATGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGACCGG
ATCGAGTGGATCGAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGATGTTGAAGCGATACATTTGGCGCTCGACCAAACAAACGAGCAACTCAGGCAGATTGCGGAGTGGC
CTGCATGCAACCTTGCAAATGACAACCATGTGCGCACGGAATTTTTCTGCATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTT
TTGTCTTGTATGGACGACCTTCGGGGTTTCGTACTCATGCCTGAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACGAGACATAGAGAGATAG
Protein sequenceShow/hide protein sequence
MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTSLDRALLQRHL
LSCMDDLRGFVLMPEDEREGFCRVLLRDIER