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IVF0025568 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0025568
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr11:18852349..18852618
RNA-Seq ExpressionIVF0025568
SyntenyIVF0025568
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059489.1 ribosomal protein L5 [Cucumis melo var. makuwa]3.25e-2967.07Show/hide
Query:  MPETQFSRPGVKNGPPTVSSLCFVLLISLSIFKAHTLRISTHTPSMLPDAFSQGIGQKGSSLEGELRCGPKRSKRWPMLPTS
        MP TQFS P VK+G PTVSSLC V +ISLSIF A     S HTP ML   FSQGIG++ SSLEG+L C PK SKRWPMLPT+
Subjt:  MPETQFSRPGVKNGPPTVSSLCFVLLISLSIFKAHTLRISTHTPSMLPDAFSQGIGQKGSSLEGELRCGPKRSKRWPMLPTS

KAA0061317.1 hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa]4.99e-2561.8Show/hide
Query:  MPETQFSRPGVKNGPPTVSSLCFVLLISLSIFKAHTLRISTHTPSMLPDAFSQGIGQKGSSLEGELRCGPKRSKRWPMLPTSGERSFNV
        MP TQFSR   K  P        VL+ISLSIF+A TLR STHT  MLP  F+QGIG++ SSLEGEL   PKR KRWPML TSGER   V
Subjt:  MPETQFSRPGVKNGPPTVSSLCFVLLISLSIFKAHTLRISTHTPSMLPDAFSQGIGQKGSSLEGELRCGPKRSKRWPMLPTSGERSFNV

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]6.17e-3370.79Show/hide
Query:  MPETQFSRPGVKNGPPTVSSLCFVLLISLSIFKAHTLRISTHTPSMLPDAFSQGIGQKGSSLEGELRCGPKRSKRWPMLPTSGERSFNV
        MP +QFSR G K+  PTVSSLCFVL+I+LSIF+A T R STHT  MLPD FS+GIGQ+ SSLEGEL C PKRSKRW MLPTS ERS  +
Subjt:  MPETQFSRPGVKNGPPTVSSLCFVLLISLSIFKAHTLRISTHTPSMLPDAFSQGIGQKGSSLEGELRCGPKRSKRWPMLPTSGERSFNV

TYK15439.1 uncharacterized protein E5676_scaffold477G00010 [Cucumis melo var. makuwa]9.86e-3069.62Show/hide
Query:  VKNGPPTVSSLCFVLLISLSIFKAHTLRISTHTPSMLPDAFSQGIGQKGSSLEGELRCGPKRSKRWPMLPTSGERSFNV
        VK+GPPTVSS+C VL+I LSIF A   R STHTP MLPD FS GI ++  SLEGEL C PKRS+RWPMLPTSG+RS +V
Subjt:  VKNGPPTVSSLCFVLLISLSIFKAHTLRISTHTPSMLPDAFSQGIGQKGSSLEGELRCGPKRSKRWPMLPTSGERSFNV

TYK22521.1 uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]2.06e-2545.71Show/hide
Query:  MPETQFSRPGVKNGPPTVSSLCFVLLISLSIFKAHTLRISTHTPSMLPDAFSQ-----------------------------------------------
        MP+TQFSRPG K+ PPTVS+LC VL+ SLSIF A T R STHTP MLPD FS+                                               
Subjt:  MPETQFSRPGVKNGPPTVSSLCFVLLISLSIFKAHTLRISTHTPSMLPDAFSQ-----------------------------------------------

Query:  -------GIGQKGSSLEGELRCGPKRSKRWPMLPTSGERS
               GIG++ SSLEGEL C PK SKRWPMLPT GERS
Subjt:  -------GIGQKGSSLEGELRCGPKRSKRWPMLPTSGERS

TrEMBL top hitse value%identityAlignment
A0A5A7V129 Ribosomal protein L5 (Mitochondrion)2.7e-2167.07Show/hide
Query:  MPETQFSRPGVKNGPPTVSSLCFVLLISLSIFKAHTLRISTHTPSMLPDAFSQGIGQKGSSLEGELRCGPKRSKRWPMLPTS
        MP TQFS P VK+G PTVSSLC V +ISLSIF A     S HTP ML   FSQGIG++ SSLEG+L C PK SKRWPMLPT+
Subjt:  MPETQFSRPGVKNGPPTVSSLCFVLLISLSIFKAHTLRISTHTPSMLPDAFSQGIGQKGSSLEGELRCGPKRSKRWPMLPTS

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein1.3e-2670.79Show/hide
Query:  MPETQFSRPGVKNGPPTVSSLCFVLLISLSIFKAHTLRISTHTPSMLPDAFSQGIGQKGSSLEGELRCGPKRSKRWPMLPTSGERSFNV
        MP +QFSR G K+  PTVSSLCFVL+I+LSIF+A T R STHT  MLPD FS+GIGQ+ SSLEGEL C PKRSKRW MLPTS ERS  +
Subjt:  MPETQFSRPGVKNGPPTVSSLCFVLLISLSIFKAHTLRISTHTPSMLPDAFSQGIGQKGSSLEGELRCGPKRSKRWPMLPTSGERSFNV

A0A5D3CZ27 ULP_PROTEASE domain-containing protein9.4e-2269.62Show/hide
Query:  VKNGPPTVSSLCFVLLISLSIFKAHTLRISTHTPSMLPDAFSQGIGQKGSSLEGELRCGPKRSKRWPMLPTSGERSFNV
        VK+GPPTVSS+C VL+I LSIF A   R STHTP MLPD FS GI ++  SLEGEL C PKRS+RWPMLPTSG+RS +V
Subjt:  VKNGPPTVSSLCFVLLISLSIFKAHTLRISTHTPSMLPDAFSQGIGQKGSSLEGELRCGPKRSKRWPMLPTSGERSFNV

A0A5D3DFP2 Uncharacterized protein3.9e-2045.71Show/hide
Query:  MPETQFSRPGVKNGPPTVSSLCFVLLISLSIFKAHTLRISTHTPSMLPDAFSQ-----------------------------------------------
        MP+TQFSRPG K+ PPTVS+LC VL+ SLSIF A T R STHTP MLPD FS+                                               
Subjt:  MPETQFSRPGVKNGPPTVSSLCFVLLISLSIFKAHTLRISTHTPSMLPDAFSQ-----------------------------------------------

Query:  -------GIGQKGSSLEGELRCGPKRSKRWPMLPTSGERS
               GIG++ SSLEGEL C PK SKRWPMLPT GERS
Subjt:  -------GIGQKGSSLEGELRCGPKRSKRWPMLPTSGERS

A0A5D3DIF8 Gag/pol protein7.4e-1969.23Show/hide
Query:  KNGPPTVSSLCFVLLISLSIFKAHTLRISTHTPSMLPDAFSQGIGQKGSSLEGELRCGPKRSKRWPMLPTSGERSFNV
        K    TVSSL F+L+ISL IF AHT R STHT  MLPD FSQGIG++ SSLEGELRC PK  KRWPML TSGE S  V
Subjt:  KNGPPTVSSLCFVLLISLSIFKAHTLRISTHTPSMLPDAFSQGIGQKGSSLEGELRCGPKRSKRWPMLPTSGERSFNV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCGAGACTCAATTTTCTCGTCCTGGGGTAAAAAACGGTCCCCCGACGGTTTCTTCCCTTTGCTTCGTATTGCTCATAAGTCTTTCGATCTTTAAGGCTCATACTCT
AAGGATTTCAACCCACACTCCTAGCATGCTCCCTGACGCGTTTTCCCAAGGTATAGGTCAGAAAGGGAGCTCCTTGGAAGGAGAACTAAGGTGCGGTCCAAAACGATCCA
AAAGATGGCCCATGCTTCCAACGAGTGGTGAACGGTCATTCAATGTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCGAGACTCAATTTTCTCGTCCTGGGGTAAAAAACGGTCCCCCGACGGTTTCTTCCCTTTGCTTCGTATTGCTCATAAGTCTTTCGATCTTTAAGGCTCATACTCT
AAGGATTTCAACCCACACTCCTAGCATGCTCCCTGACGCGTTTTCCCAAGGTATAGGTCAGAAAGGGAGCTCCTTGGAAGGAGAACTAAGGTGCGGTCCAAAACGATCCA
AAAGATGGCCCATGCTTCCAACGAGTGGTGAACGGTCATTCAATGTCTGA
Protein sequenceShow/hide protein sequence
MPETQFSRPGVKNGPPTVSSLCFVLLISLSIFKAHTLRISTHTPSMLPDAFSQGIGQKGSSLEGELRCGPKRSKRWPMLPTSGERSFNV