CuGenDBv2

Gene ID	IVF0025632
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	photosystem II core complex proteins psbY, chloroplastic
Genome location	chr03:26911471..26912200
RNA-Seq Expression	IVF0025632
Synteny	IVF0025632
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0034219 - carbohydrate transmembrane transport (biological process) GO:0045454 - cell redox homeostasis (biological process) GO:0009523 - photosystem II (cellular component) GO:0009534 - chloroplast thylakoid (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0030145 - manganese ion binding (molecular function) GO:0051119 - sugar transmembrane transporter activity (molecular function)
InterPro domains	IPR009388 - Photosystem II PsbY IPR038760 - Photosystem II PsbY, plant

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6598253.1 Photosystem II core complex proteins psbY, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

8.31e-82

79.78

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Query:  MAATMATMAVLSI----------------IPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLAL
        MAATMATMAVLS+                IPKPISLLSLQNLPKGLISSKSNE+SNLS FLSSTAIAGAVF+ L +SDPAFAAQQIA+IAADGDNRG+AL
Subjt:  MAATMATMAVLSI----------------IPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIG----------FMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILW
        LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIG          FMYAPDASASE+AMIADASSSDSRGQLLLFVV PAILW
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIG----------FMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILW

KGN62604.2 hypothetical protein Csa_018753 [Cucumis sativus]

1.13e-86

84.15

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Query:  MAATMATMAVLS----------------IIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLAL
        MAATMATMAVLS                IIPKPISLLSLQNLPKGLISSKSN+NSNLSTFLSSTAIAGAVFATLG+SDPAFAAQQIAEIAADGDNRGLAL
Subjt:  MAATMATMAVLS----------------IIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIG----------FMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILW
        LLPLIPA+AWVLFNILQPALNQINRMRSDKGVIIG          FMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILW
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIG----------FMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILW

XP_004142959.3 photosystem II core complex proteins psbY, chloroplastic [Cucumis sativus]

2.80e-122

86.32

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Query:  MTWLYLCLPSPHLITPNIVLPKPNHFYFILHLSSTCQSPELSSTETSKSTSMAATMATMAVLS----------------IIPKPISLLSLQNLPKGLISS
        MTWLYLCL SPHLITPNIVLPKPN FYFILHLSSTCQSPELSST TSKSTSMAATMATMAVLS                IIPKPISLLSLQNLPKGLISS
Subjt:  MTWLYLCLPSPHLITPNIVLPKPNHFYFILHLSSTCQSPELSSTETSKSTSMAATMATMAVLS----------------IIPKPISLLSLQNLPKGLISS

Query:  KSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIG----------FMYA
        KSN+NSNLSTFLSSTAIAGAVFATLG+SDPAFAAQQIAEIAADGDNRGLALLLPLIPA+AWVLFNILQPALNQINRMRSDKGVIIG          FMYA
Subjt:  KSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIG----------FMYA

Query:  PDASASEIAMIADASSSDSRGQLLLFVVAPAILW
        PDASASEIAMIADASSSDSRGQLLLFVVAPAILW
Subjt:  PDASASEIAMIADASSSDSRGQLLLFVVAPAILW

XP_008444395.1 PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Cucumis melo]

1.86e-127

88.89

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Query:  MTWLYLCLPSPHLITPNIVLPKPNHFYFILHLSSTCQSPELSSTETSKSTSMAATMATMAVLS----------------IIPKPISLLSLQNLPKGLISS
        MTWLYLCLPSPHLITPNIVLPKPNHFYFILHLSSTCQSPELSSTETSKSTSMAATMATMAVLS                IIPKPISLLSLQNLPKGLISS
Subjt:  MTWLYLCLPSPHLITPNIVLPKPNHFYFILHLSSTCQSPELSSTETSKSTSMAATMATMAVLS----------------IIPKPISLLSLQNLPKGLISS

Query:  KSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIG----------FMYA
        KSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIG          FMYA
Subjt:  KSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIG----------FMYA

Query:  PDASASEIAMIADASSSDSRGQLLLFVVAPAILW
        PDASASEIAMIADASSSDSRGQLLLFVVAPAILW
Subjt:  PDASASEIAMIADASSSDSRGQLLLFVVAPAILW

XP_038886078.1 LOW QUALITY PROTEIN: photosystem II core complex proteins psbY, chloroplastic-like [Benincasa hispida]

3.56e-109

79.57

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Query:  MTWLYLCLPSPHLITPNIVLPKPNHFYFILHLSSTCQSP-ELSSTETSKSTSMAATMATMAVLSI----------------IPKPISLLSLQNLPKGLIS
        MTWLYL LPSPHL +    LPKPN  YFILH+  TCQ P ELSSTETSKSTSMAATMATMAVLS+                IPKPISLLSLQNLPKGL+S
Subjt:  MTWLYLCLPSPHLITPNIVLPKPNHFYFILHLSSTCQSP-ELSSTETSKSTSMAATMATMAVLSI----------------IPKPISLLSLQNLPKGLIS

Query:  SKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIG----------FMY
        SKSN+NSNLST LSSTAIAGAVF+TL +SDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQIN+MRSDKGVIIG          FMY
Subjt:  SKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIG----------FMY

Query:  APDASASEIAMIADASSSDSRGQLLLFVVAPAILW
        APDASASEIAMIADASSSDSRGQLLLFVVAPAILW
Subjt:  APDASASEIAMIADASSSDSRGQLLLFVVAPAILW

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LKA1 Uncharacterized protein

3.1e-95

86.32

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Query:  MTWLYLCLPSPHLITPNIVLPKPNHFYFILHLSSTCQSPELSSTETSKSTSMAATMATMAVLS----------------IIPKPISLLSLQNLPKGLISS
        MTWLYLCL SPHLITPNIVLPKPN FYFILHLSSTCQSPELSST TSKSTSMAATMATMAVLS                IIPKPISLLSLQNLPKGLISS
Subjt:  MTWLYLCLPSPHLITPNIVLPKPNHFYFILHLSSTCQSPELSSTETSKSTSMAATMATMAVLS----------------IIPKPISLLSLQNLPKGLISS

Query:  KSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVII----------GFMYA
        KSN+NSNLSTFLSSTAIAGAVFATLG+SDPAFAAQQIAEIAADGDNRGLALLLPLIPA+AWVLFNILQPALNQINRMRSDKGVII          GFMYA
Subjt:  KSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVII----------GFMYA

Query:  PDASASEIAMIADASSSDSRGQLLLFVVAPAILW
        PDASASEIAMIADASSSDSRGQLLLFVVAPAILW
Subjt:  PDASASEIAMIADASSSDSRGQLLLFVVAPAILW

A0A1S3B9R1 photosystem II core complex proteins psbY, chloroplastic

3.6e-99

88.89

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Query:  MTWLYLCLPSPHLITPNIVLPKPNHFYFILHLSSTCQSPELSSTETSKSTSMAATMATMAVLS----------------IIPKPISLLSLQNLPKGLISS
        MTWLYLCLPSPHLITPNIVLPKPNHFYFILHLSSTCQSPELSSTETSKSTSMAATMATMAVLS                IIPKPISLLSLQNLPKGLISS
Subjt:  MTWLYLCLPSPHLITPNIVLPKPNHFYFILHLSSTCQSPELSSTETSKSTSMAATMATMAVLS----------------IIPKPISLLSLQNLPKGLISS

Query:  KSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVII----------GFMYA
        KSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVII          GFMYA
Subjt:  KSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVII----------GFMYA

Query:  PDASASEIAMIADASSSDSRGQLLLFVVAPAILW
        PDASASEIAMIADASSSDSRGQLLLFVVAPAILW
Subjt:  PDASASEIAMIADASSSDSRGQLLLFVVAPAILW

A0A5A7UYJ2 Photosystem II core complex proteins psbY

3.6e-99

88.89

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Query:  MTWLYLCLPSPHLITPNIVLPKPNHFYFILHLSSTCQSPELSSTETSKSTSMAATMATMAVLS----------------IIPKPISLLSLQNLPKGLISS
        MTWLYLCLPSPHLITPNIVLPKPNHFYFILHLSSTCQSPELSSTETSKSTSMAATMATMAVLS                IIPKPISLLSLQNLPKGLISS
Subjt:  MTWLYLCLPSPHLITPNIVLPKPNHFYFILHLSSTCQSPELSSTETSKSTSMAATMATMAVLS----------------IIPKPISLLSLQNLPKGLISS

Query:  KSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVII----------GFMYA
        KSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVII          GFMYA
Subjt:  KSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVII----------GFMYA

Query:  PDASASEIAMIADASSSDSRGQLLLFVVAPAILW
        PDASASEIAMIADASSSDSRGQLLLFVVAPAILW
Subjt:  PDASASEIAMIADASSSDSRGQLLLFVVAPAILW

A0A6J1BQF3 photosystem II core complex proteins psbY, chloroplastic

1.2e-59

75.96

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Query:  MAATMATMAVLSI----------------IPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLAL
        MAATMATMAVLS+                I  PISLLSLQNLPK LISSK+++N NLSTFLSSTAIAGAVF+   +SDPAFAAQQIAEIAA+GDNRGLAL
Subjt:  MAATMATMAVLSI----------------IPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIG----------FMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILW
        LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIG          FMYAPDASA+EIAMIADASSSD+RGQLLLFV++PAILW
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIG----------FMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILW

F6GVJ9 Uncharacterized protein

1.2e-49

67.21

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Query:  MAATMATMAVLSI----------------IPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLAL
        MAAT+ATMA+L+                   KPISLLS+QNLPKGL + KS+EN NLST L+ TAIAGA+F+TL + DPA AAQQIAEI ADGDNRGLAL
Subjt:  MAATMATMAVLSI----------------IPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVII----------GFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILW
        LLP+IPAIAWVLFNILQPALNQ+N+MRS KGVII          GFM  P ASASEIA +ADA+SSD+RGQLLLFVV PAILW
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVII----------GFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILW

SwissProt top hits

e value

%identity

Alignment

O49347 Photosystem II core complex proteins psbY, chloroplastic

1.8e-31

51.18

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Query:  MAATMATMA-VLSIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIA---ADGDNRGLALLLPLIPAIAWVL
        MAA MAT    +S+ P P  L + Q   K  IS  +    N+S  ++STA+AGAVF++L  S+PA A QQIA++A   A  DNRGLALLLP++PAIAWVL
Subjt:  MAATMATMA-VLSIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIA---ADGDNRGLALLLPLIPAIAWVL

Query:  FNILQPALNQINRMRSDKGVIIGFMYAPDASASEI---------AMIADASSSDSRGQLLLFVVAPAILW
        +NILQPA+NQ+N+MR  KG+++G       +AS +         A  A A+SSDSRGQLLL VV PA+LW
Subjt:  FNILQPALNQINRMRSDKGVIIGFMYAPDASASEI---------AMIADASSSDSRGQLLLFVVAPAILW

P80470 Photosystem II core complex proteins psbY, chloroplastic

3.2e-28

52.41

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Query:  MAATMA-TMAVL-------------SIIPKPISL-LSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAAD---GDNRGL
        MAATMA TMAVL             S  PKP S  +SL   P GL +SK      LS  +++ AIAGAVFATLG+ DPAFA QQ+A+IAA+    DNRGL
Subjt:  MAATMA-TMAVL-------------SIIPKPISL-LSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAAD---GDNRGL

Query:  ALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVII-----------GFMYA-PDASASEIAMIADASSSDSRGQLLLFVVAPAILW
        ALLLP+IPA+ WVLFNILQPALNQIN+MR++K   I           G + A P+A A+   +   A  SD+RG LLL VV PAI W
Subjt:  ALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVII-----------GFMYA-PDASASEIAMIADASSSDSRGQLLLFVVAPAILW

Arabidopsis top hits

e value

%identity

Alignment

AT1G67740.1 photosystem II BY

1.3e-32

51.18

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Query:  MAATMATMA-VLSIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIA---ADGDNRGLALLLPLIPAIAWVL
        MAA MAT    +S+ P P  L + Q   K  IS  +    N+S  ++STA+AGAVF++L  S+PA A QQIA++A   A  DNRGLALLLP++PAIAWVL
Subjt:  MAATMATMA-VLSIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIA---ADGDNRGLALLLPLIPAIAWVL

Query:  FNILQPALNQINRMRSDKGVIIGFMYAPDASASEI---------AMIADASSSDSRGQLLLFVVAPAILW
        +NILQPA+NQ+N+MR  KG+++G       +AS +         A  A A+SSDSRGQLLL VV PA+LW
Subjt:  FNILQPALNQINRMRSDKGVIIGFMYAPDASASEI---------AMIADASSSDSRGQLLLFVVAPAILW

Sequences

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CDS sequence

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ATGACTTGGCTTTACCTGTGTCTTCCATCTCCTCATCTCATCACTCCTAACATTGTTTTGCCAAAACCCAACCATTTCTACTTCATTCTGCATCTCTCCTCTACCTGCCA
AAGCCCAGAGCTTAGTTCAACAGAAACAAGCAAGTCAACTTCAATGGCAGCTACCATGGCTACAATGGCGGTGCTCAGTATAATCCCCAAACCTATCTCCCTCCTCTCTC
TCCAAAACCTTCCAAAAGGCCTTATTTCATCAAAATCTAATGAAAATTCCAACTTATCAACCTTCCTCTCCAGCACCGCCATCGCCGGAGCTGTCTTTGCAACTTTGGGA
ACATCGGATCCTGCATTTGCAGCCCAACAAATTGCAGAGATAGCAGCCGACGGTGACAACCGTGGTTTAGCCCTTCTGCTACCTCTTATCCCGGCCATAGCATGGGTTCT
GTTCAACATATTACAGCCAGCACTCAACCAGATCAACAGAATGCGCAGTGACAAGGGTGTGATAATTGGGTTTATGTACGCACCTGATGCTTCGGCCAGCGAGATTGCCA
TGATTGCCGATGCTTCTTCAAGCGATAGCAGGGGACAACTTCTTCTGTTTGTCGTAGCACCCGCCATTCTTTGGTGTTGTACAACATTCTACAGCCGGCTTTGA

mRNA sequence

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Protein sequence

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MTWLYLCLPSPHLITPNIVLPKPNHFYFILHLSSTCQSPELSSTETSKSTSMAATMATMAVLSIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLG
TSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWCCTTFYSRL

IVF0025632 (gene) of Melon (IVF77) v1 genome