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IVF0025636 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0025636
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr09:15734964..15735203
RNA-Seq ExpressionIVF0025636
SyntenyIVF0025636
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037173.1 retrotransposon protein [Cucumis melo var. makuwa]3.02e-1064.44Show/hide
Query:  MSPDEVMGTQTARASDGRNVSSESKRKRGGQSLENGDIICIAIEY
        MSP E+MGT+TAR S+GR VSS SK+KRGGQ  ++GD++C A+EY
Subjt:  MSPDEVMGTQTARASDGRNVSSESKRKRGGQSLENGDIICIAIEY

KAA0043207.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]2.44e-1162.5Show/hide
Query:  SPDEVMGTQTARASDGRNVSSESKRKRGGQSLENGDIICIAIEYVINNLTVLLTCP
        SPDEVMGT+T RAS+GRNVSS SK K  GQS + GD+IC AIEY    LT +   P
Subjt:  SPDEVMGTQTARASDGRNVSSESKRKRGGQSLENGDIICIAIEYVINNLTVLLTCP

KAA0065970.1 retrotransposon protein [Cucumis melo var. makuwa]8.36e-1051.28Show/hide
Query:  MSPDEVMGTQTARASDGRNVSSESKRKRGGQSLENGDIICIAIEYVINNLTVLLTCPSYNGKTQAQG-KRSFDSYRSS
        MSP+E+MGT+T R S+GR V S SK+KRGGQ +++GD+I  AIEYV               KTQA+  KR FDS+R S
Subjt:  MSPDEVMGTQTARASDGRNVSSESKRKRGGQSLENGDIICIAIEYVINNLTVLLTCPSYNGKTQAQG-KRSFDSYRSS

KAA0066105.1 retrotransposon protein [Cucumis melo var. makuwa]1.12e-47100Show/hide
Query:  MSPDEVMGTQTARASDGRNVSSESKRKRGGQSLENGDIICIAIEYVINNLTVLLTCPSYNGKTQAQGKRSFDSYRSSSN
        MSPDEVMGTQTARASDGRNVSSESKRKRGGQSLENGDIICIAIEYVINNLTVLLTCPSYNGKTQAQGKRSFDSYRSSSN
Subjt:  MSPDEVMGTQTARASDGRNVSSESKRKRGGQSLENGDIICIAIEYVINNLTVLLTCPSYNGKTQAQGKRSFDSYRSSSN

TYK12261.1 retrotransposon protein [Cucumis melo var. makuwa]3.45e-1162.5Show/hide
Query:  SPDEVMGTQTARASDGRNVSSESKRKRGGQSLENGDIICIAIEYVINNLTVLLTCP
        SPDEVMGT+T RAS+GRNVSS SK K  GQS + GD+IC AIEY    LT +   P
Subjt:  SPDEVMGTQTARASDGRNVSSESKRKRGGQSLENGDIICIAIEYVINNLTVLLTCP

TrEMBL top hitse value%identityAlignment
A0A5A7T2H9 Retrotransposon protein3.4e-0764.44Show/hide
Query:  MSPDEVMGTQTARASDGRNVSSESKRKRGGQSLENGDIICIAIEY
        MSP E+MGT+TAR S+GR VSS SK+KRGGQ  ++GD++C A+EY
Subjt:  MSPDEVMGTQTARASDGRNVSSESKRKRGGQSLENGDIICIAIEY

A0A5A7TN32 Putative nuclease HARBI14.0e-0862.5Show/hide
Query:  SPDEVMGTQTARASDGRNVSSESKRKRGGQSLENGDIICIAIEYVINNLTVLLTCP
        SPDEVMGT+T RAS+GRNVSS SK K  GQS + GD+IC AIEY    LT +   P
Subjt:  SPDEVMGTQTARASDGRNVSSESKRKRGGQSLENGDIICIAIEYVINNLTVLLTCP

A0A5D3BRF0 Retrotransposon protein7.5e-0766.67Show/hide
Query:  MSPDEVMGTQTARASDGRNVSSESKRKRGGQSLENGDIICIAIEY
        MSPDE+MGT+TAR S+GR VSS SKRKRGGQ+ ++GD++   IEY
Subjt:  MSPDEVMGTQTARASDGRNVSSESKRKRGGQSLENGDIICIAIEY

A0A5D3CKC3 Retrotransposon protein4.0e-0862.5Show/hide
Query:  SPDEVMGTQTARASDGRNVSSESKRKRGGQSLENGDIICIAIEYVINNLTVLLTCP
        SPDEVMGT+T RAS+GRNVSS SK K  GQS + GD+IC AIEY    LT +   P
Subjt:  SPDEVMGTQTARASDGRNVSSESKRKRGGQSLENGDIICIAIEYVINNLTVLLTCP

A0A5D3CW35 Retrotransposon protein1.1e-34100Show/hide
Query:  MSPDEVMGTQTARASDGRNVSSESKRKRGGQSLENGDIICIAIEYVINNLTVLLTCPSYNGKTQAQGKRSFDSYRSSSN
        MSPDEVMGTQTARASDGRNVSSESKRKRGGQSLENGDIICIAIEYVINNLTVLLTCPSYNGKTQAQGKRSFDSYRSSSN
Subjt:  MSPDEVMGTQTARASDGRNVSSESKRKRGGQSLENGDIICIAIEYVINNLTVLLTCPSYNGKTQAQGKRSFDSYRSSSN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACCTGACGAAGTAATGGGCACACAAACCGCTCGTGCAAGTGACGGTAGGAATGTTTCTAGCGAGTCTAAAAGGAAACGGGGAGGACAGTCCCTAGAAAATGGGGA
CATAATTTGCATTGCCATTGAGTATGTCATAAACAACTTAACCGTATTGCTGACTTGCCCATCCTACAATGGCAAGACGCAAGCACAAGGCAAGAGGTCGTTTGATAGTT
ACAGATCATCCTCAAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCACCTGACGAAGTAATGGGCACACAAACCGCTCGTGCAAGTGACGGTAGGAATGTTTCTAGCGAGTCTAAAAGGAAACGGGGAGGACAGTCCCTAGAAAATGGGGA
CATAATTTGCATTGCCATTGAGTATGTCATAAACAACTTAACCGTATTGCTGACTTGCCCATCCTACAATGGCAAGACGCAAGCACAAGGCAAGAGGTCGTTTGATAGTT
ACAGATCATCCTCAAACTGA
Protein sequenceShow/hide protein sequence
MSPDEVMGTQTARASDGRNVSSESKRKRGGQSLENGDIICIAIEYVINNLTVLLTCPSYNGKTQAQGKRSFDSYRSSSN