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IVF0025638 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0025638
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGeranylgeranyl transferase type-2 subunit beta-like
Genome locationchr07:7374937..7375233
RNA-Seq ExpressionIVF0025638
SyntenyIVF0025638
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0008318 - protein prenyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031621.1 geranylgeranyl transferase type-2 subunit beta-like [Cucumis melo var. makuwa]1.53e-4679.59Show/hide
Query:  MSGSAVTSVFCCVGALAIMGSLQHIDKDLLVY-------------GRPEKLLECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLTVGSLKLDHD
        MSGSAV SVFCCVG+LAIMGSLQHIDKDLL               GRPEKL ECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLTVGS +LDHD
Subjt:  MSGSAVTSVFCCVGALAIMGSLQHIDKDLLVY-------------GRPEKLLECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLTVGSLKLDHD

KAF5939185.1 hypothetical protein HYC85_023444 [Camellia sinensis]2.41e-0557.45Show/hide
Query:  VFCCVGALAIMGSLQHIDKDLLVY-------------GRPEKLLECG
        VFCCVGALAI GSL HIDKDLL +             GRPEKL + G
Subjt:  VFCCVGALAIMGSLQHIDKDLLVY-------------GRPEKLLECG

KDO47736.1 hypothetical protein CISIN_1g0213052mg [Citrus sinensis]2.79e-0638.89Show/hide
Query:  VFCCVGALAIMGSLQHIDKDLLVY-------------GRPEKLLECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLTVGSLKLDHD
        +FCCVGALAI G+L H+DKDLL +             GRPEKL + G                              LLL VGS KLDHD
Subjt:  VFCCVGALAIMGSLQHIDKDLLVY-------------GRPEKLLECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLTVGSLKLDHD

TXG61665.1 hypothetical protein EZV62_013028 [Acer yangbiense]1.71e-0540.45Show/hide
Query:  VFCCVGALAIMGSLQHIDKDLLVY-------------GRPEKLLECGFELLLHTLTNSWLGSYSYSPTHQLHC---VASVLLLTVGSLK
        +FCCVGALAI G+L H+DKDLL +             GRPEKL + G  LLL  L N  +           H    VA + LL    LK
Subjt:  VFCCVGALAIMGSLQHIDKDLLVY-------------GRPEKLLECGFELLLHTLTNSWLGSYSYSPTHQLHC---VASVLLLTVGSLK

XP_021320434.1 geranylgeranyl transferase type-2 subunit beta 1 isoform X1 [Sorghum bicolor]1.38e-0553.85Show/hide
Query:  VFCCVGALAIMGSLQHIDKDLLVY-------------GRPEKLLECGFELLL
        +FCCVGALAI GSL HID+DLL +             GRPEKL +  F LLL
Subjt:  VFCCVGALAIMGSLQHIDKDLLVY-------------GRPEKLLECGFELLL

TrEMBL top hitse value%identityAlignment
A0A5A7SQ05 Geranylgeranyl transferase type-2 subunit beta-like1.0e-3379.59Show/hide
Query:  MSGSAVTSVFCCVGALAIMGSLQHIDKDLL-------------VYGRPEKLLECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLTVGSLKLDHD
        MSGSAV SVFCCVG+LAIMGSLQHIDKDLL               GRPEKL ECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLTVGS +LDHD
Subjt:  MSGSAVTSVFCCVGALAIMGSLQHIDKDLL-------------VYGRPEKLLECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLTVGSLKLDHD

SwissProt top hitse value%identityAlignment
Q84J75 Geranylgeranyl transferase type-2 subunit beta 14.7e-0458.82Show/hide
Query:  VFCCVGALAIMGSLQHIDKDLLVYGRPEKLLECG
        +FCCVGALAI GSL H+DKD L +   E+ L+ G
Subjt:  VFCCVGALAIMGSLQHIDKDLLVYGRPEKLLECG

Arabidopsis top hitse value%identityAlignment
AT3G12070.1 RAB geranylgeranyl transferase beta subunit 22.9e-0450Show/hide
Query:  VFCCVGALAIMGSLQHIDKDLL--------------VYGRPEKL
        +FCCVGALAI G+L  +DKDLL              + GRPEKL
Subjt:  VFCCVGALAIMGSLQHIDKDLL--------------VYGRPEKL

AT3G12070.2 RAB geranylgeranyl transferase beta subunit 22.9e-0450Show/hide
Query:  VFCCVGALAIMGSLQHIDKDLL--------------VYGRPEKL
        +FCCVGALAI G+L  +DKDLL              + GRPEKL
Subjt:  VFCCVGALAIMGSLQHIDKDLL--------------VYGRPEKL

AT5G12210.1 RAB geranylgeranyl transferase beta subunit 13.4e-0558.82Show/hide
Query:  VFCCVGALAIMGSLQHIDKDLLVYGRPEKLLECG
        +FCCVGALAI GSL H+DKD L +   E+ L+ G
Subjt:  VFCCVGALAIMGSLQHIDKDLLVYGRPEKLLECG

AT5G12210.2 RAB geranylgeranyl transferase beta subunit 13.4e-0558.82Show/hide
Query:  VFCCVGALAIMGSLQHIDKDLLVYGRPEKLLECG
        +FCCVGALAI GSL H+DKD L +   E+ L+ G
Subjt:  VFCCVGALAIMGSLQHIDKDLLVYGRPEKLLECG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGGTTCTGCTGTGACTTCAGTTTTCTGTTGTGTTGGCGCACTTGCTATAATGGGTTCTCTACAACATATTGACAAGGATCTCCTTGTCTATGGTCGACCCGAGAA
ACTTCTTGAATGTGGGTTCGAACTCCTATTACATACTCTAACCAATTCTTGGCTTGGAAGTTATTCATACTCTCCCACTCACCAACTTCATTGTGTTGCTTCAGTTTTGC
TACTCACGGTGGGTTCTTTGAAACTTGATCATGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAGGTTCTGCTGTGACTTCAGTTTTCTGTTGTGTTGGCGCACTTGCTATAATGGGTTCTCTACAACATATTGACAAGGATCTCCTTGTCTATGGTCGACCCGAGAA
ACTTCTTGAATGTGGGTTCGAACTCCTATTACATACTCTAACCAATTCTTGGCTTGGAAGTTATTCATACTCTCCCACTCACCAACTTCATTGTGTTGCTTCAGTTTTGC
TACTCACGGTGGGTTCTTTGAAACTTGATCATGATTGA
Protein sequenceShow/hide protein sequence
MSGSAVTSVFCCVGALAIMGSLQHIDKDLLVYGRPEKLLECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLTVGSLKLDHD