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IVF0025683 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0025683
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr09:11032193..11032363
RNA-Seq ExpressionIVF0025683
SyntenyIVF0025683
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040916.1 uncharacterized protein E6C27_scaffold125G00290 [Cucumis melo var. makuwa]2.14e-1983.33Show/hide
Query:  MAQKLQALRQGSRSVEDYSKEMDNLMDQLDLDEKMETLMARVLNGLNKEIADKV
        MAQKLQALRQGS+ VEDY KEMD LMD+LDLDE+METL+ R LNGLNKEIADKV
Subjt:  MAQKLQALRQGSRSVEDYSKEMDNLMDQLDLDEKMETLMARVLNGLNKEIADKV

KAA0047486.1 Zinc finger, CCHC-type [Cucumis melo var. makuwa]6.92e-2698.18Show/hide
Query:  MAQKLQALRQGSRSVEDYSKEMDNLMDQLDLDEKMETLMARVLNGLNKEIADKVG
        MAQKLQALRQGSRSVEDYSKEMDNLMDQLDLDEKMETLMARVLNGLNKEIADK G
Subjt:  MAQKLQALRQGSRSVEDYSKEMDNLMDQLDLDEKMETLMARVLNGLNKEIADKVG

TYK10621.1 uncharacterized protein E5676_scaffold315G00990 [Cucumis melo var. makuwa]5.86e-1883.02Show/hide
Query:  MAQKLQALRQGSRSVEDYSKEMDNLMDQLDLDEKMETLMARVLNGLNKEIADK
        MAQKLQALRQGS+ VEDY KEMD LMD+LDLDE+METL+ R LNGLNKEIADK
Subjt:  MAQKLQALRQGSRSVEDYSKEMDNLMDQLDLDEKMETLMARVLNGLNKEIADK

XP_023530046.1 uncharacterized protein LOC111792716 [Cucurbita pepo subsp. pepo]4.55e-1778.57Show/hide
Query:  MAQKLQALRQGSRSVEDYSKEMDNLMDQLDLDEKMETLMARVLNGLNKEIADKVGL
        MAQKLQAL+QG +SVEDY KEMD LMD+LDLDE ME LMAR LNGLN EIADK  L
Subjt:  MAQKLQALRQGSRSVEDYSKEMDNLMDQLDLDEKMETLMARVLNGLNKEIADKVGL

XP_038887118.1 uncharacterized protein K02A2.6-like [Benincasa hispida]5.82e-1983.93Show/hide
Query:  MAQKLQALRQGSRSVEDYSKEMDNLMDQLDLDEKMETLMARVLNGLNKEIADKVGL
        MAQ+LQALRQG++SVEDY KEMD LMD+LDLDE METLMAR LNGLNKEIADKV L
Subjt:  MAQKLQALRQGSRSVEDYSKEMDNLMDQLDLDEKMETLMARVLNGLNKEIADKVGL

TrEMBL top hitse value%identityAlignment
A0A5A7TFU8 Retrotrans_gag domain-containing protein4.5e-1483.33Show/hide
Query:  MAQKLQALRQGSRSVEDYSKEMDNLMDQLDLDEKMETLMARVLNGLNKEIADKV
        MAQKLQALRQGS+ VEDY KEMD LMD+LDLDE+METL+ R LNGLNKEIADKV
Subjt:  MAQKLQALRQGSRSVEDYSKEMDNLMDQLDLDEKMETLMARVLNGLNKEIADKV

A0A5A7TZT5 Zinc finger, CCHC-type6.1e-1998.18Show/hide
Query:  MAQKLQALRQGSRSVEDYSKEMDNLMDQLDLDEKMETLMARVLNGLNKEIADKVG
        MAQKLQALRQGSRSVEDYSKEMDNLMDQLDLDEKMETLMARVLNGLNKEIADK G
Subjt:  MAQKLQALRQGSRSVEDYSKEMDNLMDQLDLDEKMETLMARVLNGLNKEIADKVG

A0A5D3CFQ1 CCHC-type domain-containing protein1.3e-1383.02Show/hide
Query:  MAQKLQALRQGSRSVEDYSKEMDNLMDQLDLDEKMETLMARVLNGLNKEIADK
        MAQKLQALRQGS+ VEDY KEMD LMD+LDLDE+METL+ R LNGLNKEIADK
Subjt:  MAQKLQALRQGSRSVEDYSKEMDNLMDQLDLDEKMETLMARVLNGLNKEIADK

A0A6J1DWE9 LOW QUALITY PROTEIN: uncharacterized protein LOC1110241152.9e-1380Show/hide
Query:  AQKLQALRQGSRSVEDYSKEMDNLMDQLDLDEKMETLMARVLNGLNKEIADKVGL
        AQKLQ LRQGS+SVEDY KEMD LM++LDL+E ME LMAR LNGLNKEIADKV L
Subjt:  AQKLQALRQGSRSVEDYSKEMDNLMDQLDLDEKMETLMARVLNGLNKEIADKVGL

A0A6J1DX46 LOW QUALITY PROTEIN: uncharacterized protein LOC1110252682.9e-1380Show/hide
Query:  AQKLQALRQGSRSVEDYSKEMDNLMDQLDLDEKMETLMARVLNGLNKEIADKVGL
        AQKLQ LRQGS+SVEDY KEMD LM++LDL+E ME LMAR LNGLNKEIADKV L
Subjt:  AQKLQALRQGSRSVEDYSKEMDNLMDQLDLDEKMETLMARVLNGLNKEIADKVGL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACAAAAGCTTCAAGCATTGAGGCAAGGCAGCAGGTCGGTGGAAGACTACTCTAAAGAGATGGACAATTTGATGGATCAACTTGATCTTGATGAGAAAATGGAGAC
TCTCATGGCACGAGTTTTGAATGGCCTTAACAAGGAGATTGCTGATAAGGTTGGTTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCACAAAAGCTTCAAGCATTGAGGCAAGGCAGCAGGTCGGTGGAAGACTACTCTAAAGAGATGGACAATTTGATGGATCAACTTGATCTTGATGAGAAAATGGAGAC
TCTCATGGCACGAGTTTTGAATGGCCTTAACAAGGAGATTGCTGATAAGGTTGGTTTGTAG
Protein sequenceShow/hide protein sequence
MAQKLQALRQGSRSVEDYSKEMDNLMDQLDLDEKMETLMARVLNGLNKEIADKVGL