CuGenDBv2

Gene ID	IVF0025694
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr02:673436..675087
RNA-Seq Expression	IVF0025694
Synteny	IVF0025694
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR036875 - Zinc finger, CCHC-type superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0038009.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

3.73e-75

37.77

Show/hide

Query:  AARFEVERFDGKADFVLWKMRMKALI-------LLQQRGLPETTTTTTTAKDRVQEMENIAFSTIIFHLEDNVLLQVSDVETSE-ELWERLEQLFSRKSF
        + RFEV +F+   DF LW+ +++A++       +L +  LP   T     ++  ++M+ +A+STI+ +L   VL  V +  T+  ELW++LE L+  KS 
Subjt:  AARFEVERFDGKADFVLWKMRMKALI-------LLQQRGLPETTTTTTTAKDRVQEMENIAFSTIIFHLEDNVLLQVSDVETSE-ELWERLEQLFSRKSF

Query:  RDRLYLKERFFGYKMDSSKNIEDNLEEFTKIAWDFSRIGAEVSDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGMVVNALRAKDKEMNEKRQEG---
         +++Y+KE+FFGYKMD SK++E+NL EF KI  D + IG ++SDE+QA+ILL+SLP  Y EVK ++ +G RDSLT+ +V +AL+ ++ ++ ++R++G   
Subjt:  RDRLYLKERFFGYKMDSSKNIEDNLEEFTKIAWDFSRIGAEVSDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGMVVNALRAKDKEMNEKRQEG---

Query:  IERGR----------------------KCYHCQKEGHIRRNCPTLRKSKE--------------------------------------------WILSSG
        + RGR                      KC+ C KEGH ++NCP L KS+E                                            WI+ SG
Subjt:  IERGR----------------------KCYHCQKEGHIRRNCPTLRKSKE--------------------------------------------WILSSG

Query:  CTMHMTPNKNYLIDFVETEETKVN-GFNDQFEVKGVGLVKIKTDDGQIRTLSNVKYVPNLTRNVISLGVLDDKGCFFMGDE-GTLKIYKDSSLILKSKLT
        CT HMTPN+++LI+F +++  KV  G N   EVKG G V I T DG IR L+NV+YVP L RN+ISL  LD + C+ +  E G +K+ K S + L+  L 
Subjt:  CTMHMTPNKNYLIDFVETEETKVN-GFNDQFEVKGVGLVKIKTDDGQIRTLSNVKYVPNLTRNVISLGVLDDKGCFFMGDE-GTLKIYKDSSLILKSKLT

Query:  NGLYILEGSAITN
        N LY+LEG+A+++
Subjt:  NGLYILEGSAITN

KAA0047995.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]

4.84e-77

37.56

Show/hide

Query:  AARFEVERFDGKADFVLWKMRMKALI-------LLQQRGLPETTTTTTTAKDRVQEMENIAFSTIIFHLEDNVLLQVSDVETSEELWERLEQLFSRKSFR
        + RFEV +F+G  DF LW+ +++A++       +L +  LP+  T     +   ++M+ +A+ TI+ +L D VL  V +  T+ ELW++LE L+  KS  
Subjt:  AARFEVERFDGKADFVLWKMRMKALI-------LLQQRGLPETTTTTTTAKDRVQEMENIAFSTIIFHLEDNVLLQVSDVETSEELWERLEQLFSRKSFR

Query:  DRLYLKERFFGYKMDSSKNIEDNLEEFTKIAWDFSRIGAEVSDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGMVVNALRAKDKEMNEKRQEG---I
        +++Y+KE+FFGYKMD SK +E+NL+EF KI  D + IG ++SDE+QAVILL+SLP  Y EVK ++ +G  DSLT+ +V++AL+ ++ E+ ++R++G   +
Subjt:  DRLYLKERFFGYKMDSSKNIEDNLEEFTKIAWDFSRIGAEVSDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGMVVNALRAKDKEMNEKRQEG---I

Query:  ERGR----------------------KCYHCQKEGHIRRNCPTLRKSKE--------------------------------------------WILSSGC
         RGR                      KC+ C KEGH ++NCP L KS+E                                            WI+ SGC
Subjt:  ERGR----------------------KCYHCQKEGHIRRNCPTLRKSKE--------------------------------------------WILSSGC

Query:  TMHMTPNKNYLIDFVETEETKVN-GFNDQFEVKGVGLVKIKTDDGQIRTLSNVKYVPNLTRNVISLGVLDDKGCFFMGDEGTLKIYKDSSLILKSKLTNG
        T HMTP++++L +F + +  KV  G N   +VKG G V+I T DG +R L+NV+YVP L RN+ISLG LD  GC    + G +K+ K S + L+  L +G
Subjt:  TMHMTPNKNYLIDFVETEETKVN-GFNDQFEVKGVGLVKIKTDDGQIRTLSNVKYVPNLTRNVISLGVLDDKGCFFMGDEGTLKIYKDSSLILKSKLTNG

Query:  LYILEGSAIT
        LY+LEG+ ++
Subjt:  LYILEGSAIT

KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

2.11e-79

38.05

Show/hide

Query:  AARFEVERFDGKADFVLWKMRMKALI-------LLQQRGLPETTTTTTTAKDRVQEMENIAFSTIIFHLEDNVLLQVSDVETSEELWERLEQLFSRKSFR
        + RFEV +F+G  DF LW+ +++A++       +L +  LP+  T     +   ++M+ +A+STI+ +L D VL  V +  T+ ELW++LE L+  KS  
Subjt:  AARFEVERFDGKADFVLWKMRMKALI-------LLQQRGLPETTTTTTTAKDRVQEMENIAFSTIIFHLEDNVLLQVSDVETSEELWERLEQLFSRKSFR

Query:  DRLYLKERFFGYKMDSSKNIEDNLEEFTKIAWDFSRIGAEVSDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGMVVNALRAKDKEMNEKRQEG---I
        +++Y+KE+FFGYKMD SK++E+NL+EF KI  D + IG ++SDE+QAVILL+SLP  Y EVK ++ +G RDSLT+ +V++AL+ ++ E+ ++R++G   +
Subjt:  DRLYLKERFFGYKMDSSKNIEDNLEEFTKIAWDFSRIGAEVSDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGMVVNALRAKDKEMNEKRQEG---I

Query:  ERGR----------------------KCYHCQKEGHIRRNCPTLRKSKE--------------------------------------------WILSSGC
         RGR                      KC+ C KEGH ++NCP L KS+E                                            WI+ SGC
Subjt:  ERGR----------------------KCYHCQKEGHIRRNCPTLRKSKE--------------------------------------------WILSSGC

Query:  TMHMTPNKNYLIDFVETEETKVN-GFNDQFEVKGVGLVKIKTDDGQIRTLSNVKYVPNLTRNVISLGVLDDKGCFFMGDEGTLKIYKDSSLILKSKLTNG
        T HMTP++++L +F + +  KV  G N   +VKG G V+I T DG +R L+NV+YVP L RN+ISLG LD  GC    + G +K+ K S + L+  L +G
Subjt:  TMHMTPNKNYLIDFVETEETKVN-GFNDQFEVKGVGLVKIKTDDGQIRTLSNVKYVPNLTRNVISLGVLDDKGCFFMGDEGTLKIYKDSSLILKSKLTNG

Query:  LYILEGSAIT
        LY+LEG+ ++
Subjt:  LYILEGSAIT

KAA0050900.1 putative retroelement pol polyprotein [Cucumis melo var. makuwa]

4.79e-240

100

Show/hide

Query:  MAARFEVERFDGKADFVLWKMRMKALILLQQRGLPETTTTTTTAKDRVQEMENIAFSTIIFHLEDNVLLQVSDVETSEELWERLEQLFSRKSFRDRLYLK
        MAARFEVERFDGKADFVLWKMRMKALILLQQRGLPETTTTTTTAKDRVQEMENIAFSTIIFHLEDNVLLQVSDVETSEELWERLEQLFSRKSFRDRLYLK
Subjt:  MAARFEVERFDGKADFVLWKMRMKALILLQQRGLPETTTTTTTAKDRVQEMENIAFSTIIFHLEDNVLLQVSDVETSEELWERLEQLFSRKSFRDRLYLK

Query:  ERFFGYKMDSSKNIEDNLEEFTKIAWDFSRIGAEVSDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGMVVNALRAKDKEMNEKRQEGIERGRKCYHC
        ERFFGYKMDSSKNIEDNLEEFTKIAWDFSRIGAEVSDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGMVVNALRAKDKEMNEKRQEGIERGRKCYHC
Subjt:  ERFFGYKMDSSKNIEDNLEEFTKIAWDFSRIGAEVSDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGMVVNALRAKDKEMNEKRQEGIERGRKCYHC

Query:  QKEGHIRRNCPTLRKSKEWILSSGCTMHMTPNKNYLIDFVETEETKVNGFNDQFEVKGVGLVKIKTDDGQIRTLSNVKYVPNLTRNVISLGVLDDKGCFF
        QKEGHIRRNCPTLRKSKEWILSSGCTMHMTPNKNYLIDFVETEETKVNGFNDQFEVKGVGLVKIKTDDGQIRTLSNVKYVPNLTRNVISLGVLDDKGCFF
Subjt:  QKEGHIRRNCPTLRKSKEWILSSGCTMHMTPNKNYLIDFVETEETKVNGFNDQFEVKGVGLVKIKTDDGQIRTLSNVKYVPNLTRNVISLGVLDDKGCFF

Query:  MGDEGTLKIYKDSSLILKSKLTNGLYILEGSAITN
        MGDEGTLKIYKDSSLILKSKLTNGLYILEGSAITN
Subjt:  MGDEGTLKIYKDSSLILKSKLTNGLYILEGSAITN

TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

1.40e-79

38.05

Show/hide

Query:  AARFEVERFDGKADFVLWKMRMKALI-------LLQQRGLPETTTTTTTAKDRVQEMENIAFSTIIFHLEDNVLLQVSDVETSEELWERLEQLFSRKSFR
        + RFEV +F+G  DF LW+ +++A++       +L +  LP+  T     +   ++M+ +A+STI+ +L D VL  V +  T+ ELW++LE L+  KS  
Subjt:  AARFEVERFDGKADFVLWKMRMKALI-------LLQQRGLPETTTTTTTAKDRVQEMENIAFSTIIFHLEDNVLLQVSDVETSEELWERLEQLFSRKSFR

Query:  DRLYLKERFFGYKMDSSKNIEDNLEEFTKIAWDFSRIGAEVSDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGMVVNALRAKDKEMNEKRQEG---I
        +++Y+KE+FFGYKMD SK++E+NL+EF KI  D + IG ++SDE+QAVILL+SLP  Y EVK ++ +G RDSLT+ +V++AL+ ++ E+ ++R++G   +
Subjt:  DRLYLKERFFGYKMDSSKNIEDNLEEFTKIAWDFSRIGAEVSDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGMVVNALRAKDKEMNEKRQEG---I

Query:  ERGR----------------------KCYHCQKEGHIRRNCPTLRKSKE--------------------------------------------WILSSGC
         RGR                      KC+ C KEGH ++NCP L KS+E                                            WI+ SGC
Subjt:  ERGR----------------------KCYHCQKEGHIRRNCPTLRKSKE--------------------------------------------WILSSGC

Query:  TMHMTPNKNYLIDFVETEETKVN-GFNDQFEVKGVGLVKIKTDDGQIRTLSNVKYVPNLTRNVISLGVLDDKGCFFMGDEGTLKIYKDSSLILKSKLTNG
        T HMTP++++L +F + +  KV  G N   +VKG G V+I T DG +R L+NV+YVP L RN+ISLG LD  GC    + G +K+ K S + L+  L +G
Subjt:  TMHMTPNKNYLIDFVETEETKVN-GFNDQFEVKGVGLVKIKTDDGQIRTLSNVKYVPNLTRNVISLGVLDDKGCFFMGDEGTLKIYKDSSLILKSKLTNG

Query:  LYILEGSAIT
        LY+LEG+ ++
Subjt:  LYILEGSAIT

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class

1.5e-67

37.56

Show/hide

Query:  AARFEVERFDGKADFVLWKMRMKALI-------LLQQRGLPETTTTTTTAKDRVQEMENIAFSTIIFHLEDNVLLQVSDVETSEELWERLEQLFSRKSFR
        + RFEV +F+G  DF LW+ +++A++       +L +  LP+  T     +   ++M+ +A+ TI+ +L D VL  V +  T+ ELW++LE L+  KS  
Subjt:  AARFEVERFDGKADFVLWKMRMKALI-------LLQQRGLPETTTTTTTAKDRVQEMENIAFSTIIFHLEDNVLLQVSDVETSEELWERLEQLFSRKSFR

Query:  DRLYLKERFFGYKMDSSKNIEDNLEEFTKIAWDFSRIGAEVSDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGMVVNALRAKDKEMNEKRQEG---I
        +++Y+KE+FFGYKMD SK +E+NL+EF KI  D + IG ++SDE+QAVILL+SLP  Y EVK ++ +G  DSLT+ +V++AL+ ++ E+ ++R++G   +
Subjt:  DRLYLKERFFGYKMDSSKNIEDNLEEFTKIAWDFSRIGAEVSDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGMVVNALRAKDKEMNEKRQEG---I

Query:  ERG----------------------RKCYHCQKEGHIRRNCPTLRKSKE--------------------------------------------WILSSGC
         RG                      RKC+ C KEGH ++NCP L KS+E                                            WI+ SGC
Subjt:  ERG----------------------RKCYHCQKEGHIRRNCPTLRKSKE--------------------------------------------WILSSGC

Query:  TMHMTPNKNYLIDFVETEETKV-NGFNDQFEVKGVGLVKIKTDDGQIRTLSNVKYVPNLTRNVISLGVLDDKGCFFMGDEGTLKIYKDSSLILKSKLTNG
        T HMTP++++L +F + +  KV  G N   +VKG G V+I T DG +R L+NV+YVP L RN+ISLG LD  GC    + G +K+ K S + L+  L +G
Subjt:  TMHMTPNKNYLIDFVETEETKV-NGFNDQFEVKGVGLVKIKTDDGQIRTLSNVKYVPNLTRNVISLGVLDDKGCFFMGDEGTLKIYKDSSLILKSKLTNG

Query:  LYILEGSAIT
        LY+LEG+ ++
Subjt:  LYILEGSAIT

A0A5A7U6T6 Putative retroelement pol polyprotein

1.3e-186

100

Show/hide

Query:  MAARFEVERFDGKADFVLWKMRMKALILLQQRGLPETTTTTTTAKDRVQEMENIAFSTIIFHLEDNVLLQVSDVETSEELWERLEQLFSRKSFRDRLYLK
        MAARFEVERFDGKADFVLWKMRMKALILLQQRGLPETTTTTTTAKDRVQEMENIAFSTIIFHLEDNVLLQVSDVETSEELWERLEQLFSRKSFRDRLYLK
Subjt:  MAARFEVERFDGKADFVLWKMRMKALILLQQRGLPETTTTTTTAKDRVQEMENIAFSTIIFHLEDNVLLQVSDVETSEELWERLEQLFSRKSFRDRLYLK

Query:  ERFFGYKMDSSKNIEDNLEEFTKIAWDFSRIGAEVSDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGMVVNALRAKDKEMNEKRQEGIERGRKCYHC
        ERFFGYKMDSSKNIEDNLEEFTKIAWDFSRIGAEVSDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGMVVNALRAKDKEMNEKRQEGIERGRKCYHC
Subjt:  ERFFGYKMDSSKNIEDNLEEFTKIAWDFSRIGAEVSDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGMVVNALRAKDKEMNEKRQEGIERGRKCYHC

Query:  QKEGHIRRNCPTLRKSKEWILSSGCTMHMTPNKNYLIDFVETEETKVNGFNDQFEVKGVGLVKIKTDDGQIRTLSNVKYVPNLTRNVISLGVLDDKGCFF
        QKEGHIRRNCPTLRKSKEWILSSGCTMHMTPNKNYLIDFVETEETKVNGFNDQFEVKGVGLVKIKTDDGQIRTLSNVKYVPNLTRNVISLGVLDDKGCFF
Subjt:  QKEGHIRRNCPTLRKSKEWILSSGCTMHMTPNKNYLIDFVETEETKVNGFNDQFEVKGVGLVKIKTDDGQIRTLSNVKYVPNLTRNVISLGVLDDKGCFF

Query:  MGDEGTLKIYKDSSLILKSKLTNGLYILEGSAITN
        MGDEGTLKIYKDSSLILKSKLTNGLYILEGSAITN
Subjt:  MGDEGTLKIYKDSSLILKSKLTNGLYILEGSAITN

A0A5A7UB25 Putative gag-pol polyprotein

1.6e-69

38.05

Show/hide

Query:  AARFEVERFDGKADFVLWKMRMKALI-------LLQQRGLPETTTTTTTAKDRVQEMENIAFSTIIFHLEDNVLLQVSDVETSEELWERLEQLFSRKSFR
        + RFEV +F+G  DF LW+ +++A++       +L +  LP+  T     +   ++M+ +A+STI+ +L D VL  V +  T+ ELW++LE L+  KS  
Subjt:  AARFEVERFDGKADFVLWKMRMKALI-------LLQQRGLPETTTTTTTAKDRVQEMENIAFSTIIFHLEDNVLLQVSDVETSEELWERLEQLFSRKSFR

Query:  DRLYLKERFFGYKMDSSKNIEDNLEEFTKIAWDFSRIGAEVSDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGMVVNALRAKDKEMNEKRQEG---I
        +++Y+KE+FFGYKMD SK++E+NL+EF KI  D + IG ++SDE+QAVILL+SLP  Y EVK ++ +G RDSLT+ +V++AL+ ++ E+ ++R++G   +
Subjt:  DRLYLKERFFGYKMDSSKNIEDNLEEFTKIAWDFSRIGAEVSDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGMVVNALRAKDKEMNEKRQEG---I

Query:  ERG----------------------RKCYHCQKEGHIRRNCPTLRKSKE--------------------------------------------WILSSGC
         RG                      RKC+ C KEGH ++NCP L KS+E                                            WI+ SGC
Subjt:  ERG----------------------RKCYHCQKEGHIRRNCPTLRKSKE--------------------------------------------WILSSGC

Query:  TMHMTPNKNYLIDFVETEETKV-NGFNDQFEVKGVGLVKIKTDDGQIRTLSNVKYVPNLTRNVISLGVLDDKGCFFMGDEGTLKIYKDSSLILKSKLTNG
        T HMTP++++L +F + +  KV  G N   +VKG G V+I T DG +R L+NV+YVP L RN+ISLG LD  GC    + G +K+ K S + L+  L +G
Subjt:  TMHMTPNKNYLIDFVETEETKV-NGFNDQFEVKGVGLVKIKTDDGQIRTLSNVKYVPNLTRNVISLGVLDDKGCFFMGDEGTLKIYKDSSLILKSKLTNG

Query:  LYILEGSAIT
        LY+LEG+ ++
Subjt:  LYILEGSAIT

A0A5D3BRV3 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.0e-63

37.72

Show/hide

Query:  GKADFVLWKMRMKALILLQQ--RGLPETTTTTTTAKDRVQEMENIAFSTIIFHLEDNVLLQVSDVETSEELWERLEQLFSRKSFRDRLYLKERFFGYKMD
        G  DF LW+ +++A+++  +  + L E        +   ++M+ +A+STI+ +L D VL  V +  T+ ELW++LE L+  KS  +++Y+KE+FFGYK+D
Subjt:  GKADFVLWKMRMKALILLQQ--RGLPETTTTTTTAKDRVQEMENIAFSTIIFHLEDNVLLQVSDVETSEELWERLEQLFSRKSFRDRLYLKERFFGYKMD

Query:  SSKNIEDNLEEFTKIAWDFSRIGAEVSDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGMVVNALRAKDKEMNEKRQEG---IERG------------
         SK++E+NL EF KI  D + IG ++SDE+Q +ILL+SLP  Y EVK ++ +G +DSLT+ +V++AL+ ++ E+ ++R++G   + RG            
Subjt:  SSKNIEDNLEEFTKIAWDFSRIGAEVSDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGMVVNALRAKDKEMNEKRQEG---IERG------------

Query:  ----------RKCYHCQKEGHIRRNCPTLRKSKE--------------------------------------------WILSSGCTMHMTPNKNYLIDFV
                  RK + C KEGH ++NCP L KS+E                                            WI  SGCT HMTPN+++LI+F 
Subjt:  ----------RKCYHCQKEGHIRRNCPTLRKSKE--------------------------------------------WILSSGCTMHMTPNKNYLIDFV

Query:  ETEETKV-NGFNDQFEVKGVGLVKIKTDDGQIRTLSNVKYVPNLTRNVISLGVLDDKGCFFMGDEGTLKIYKDSSLILKSKLTNGLYILEGSAIT
        +++  KV  G N   EVKG G V I T DG IR L+NV+YVP L RN+ISLG LD  G     + G +K+ K S + L+  L NGLY+LEG+A++
Subjt:  ETEETKV-NGFNDQFEVKGVGLVKIKTDDGQIRTLSNVKYVPNLTRNVISLGVLDDKGCFFMGDEGTLKIYKDSSLILKSKLTNGLYILEGSAIT

A0A5D3DNU1 Putative gag-pol polyprotein

9.6e-70

38.05

Show/hide

Query:  AARFEVERFDGKADFVLWKMRMKALI-------LLQQRGLPETTTTTTTAKDRVQEMENIAFSTIIFHLEDNVLLQVSDVETSEELWERLEQLFSRKSFR
        + RFEV +F+G  DF LW+ +++A++       +L +  LP+  T     +   ++M+ +A+STI+ +L D VL  V +  T+ ELW++LE L+  KS  
Subjt:  AARFEVERFDGKADFVLWKMRMKALI-------LLQQRGLPETTTTTTTAKDRVQEMENIAFSTIIFHLEDNVLLQVSDVETSEELWERLEQLFSRKSFR

Query:  DRLYLKERFFGYKMDSSKNIEDNLEEFTKIAWDFSRIGAEVSDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGMVVNALRAKDKEMNEKRQEG---I
        +++Y+KE+FFGYKMD SK++E+NL+EF KI  D + IG ++SDE+QAVILL+SLP  Y EVK ++ +G RDSLT+ +V++AL+ ++ E+ ++R++G   +
Subjt:  DRLYLKERFFGYKMDSSKNIEDNLEEFTKIAWDFSRIGAEVSDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGMVVNALRAKDKEMNEKRQEG---I

Query:  ERG----------------------RKCYHCQKEGHIRRNCPTLRKSKE--------------------------------------------WILSSGC
         RG                      RKC+ C KEGH ++NCP L KS+E                                            WI+ SGC
Subjt:  ERG----------------------RKCYHCQKEGHIRRNCPTLRKSKE--------------------------------------------WILSSGC

Query:  TMHMTPNKNYLIDFVETEETKV-NGFNDQFEVKGVGLVKIKTDDGQIRTLSNVKYVPNLTRNVISLGVLDDKGCFFMGDEGTLKIYKDSSLILKSKLTNG
        T HMTP++++L +F + +  KV  G N   +VKG G V+I T DG +R L+NV+YVP L RN+ISLG LD  GC    + G +K+ K S + L+  L +G
Subjt:  TMHMTPNKNYLIDFVETEETKV-NGFNDQFEVKGVGLVKIKTDDGQIRTLSNVKYVPNLTRNVISLGVLDDKGCFFMGDEGTLKIYKDSSLILKSKLTNG

Query:  LYILEGSAIT
        LY+LEG+ ++
Subjt:  LYILEGSAIT

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

2.6e-11

24.69

Show/hide

Query:  ARFEVERFDGKADFVLWKMRMKALILLQQRGLPETTTTTTTAKDRVQEMENIAFSTIIFHLEDNVLLQVSDVETSEELWERLEQLFSRKSFRDRLYLKER
        A+  ++ FDG+  + +WK R++AL+  Q               D  ++ E  A STII +L D+ L   +   T+ ++ E L+ ++ RKS   +L L++R
Subjt:  ARFEVERFDGKADFVLWKMRMKALILLQQRGLPETTTTTTTAKDRVQEMENIAFSTIIFHLEDNVLLQVSDVETSEELWERLEQLFSRKSFRDRLYLKER

Query:  FFGYKMDSSKNIEDNLEEFTKIAWDFSRIGAEVSDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGMVVNALRAKD------------KEMNE-----
            K+ S  ++  +   F ++  +    GA++ + D+   LL +LPS Y+ +  ++     ++LT+  V N L  ++            K MN      
Subjt:  FFGYKMDSSKNIEDNLEEFTKIAWDFSRIGAEVSDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGMVVNALRAKD------------KEMNE-----

Query:  -------------KRQEGIERGR-----KCYHCQKEGHIRRNC
                      + + I +G      KC+HC +EGHI+++C
Subjt:  -------------KRQEGIERGR-----KCYHCQKEGHIRRNC

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.5e-30

24.44

Show/hide

Query:  RFEVERFDGKADFVLWKMRMKALILLQQRGLPETTTTTTTAKDRVQ-----EMENIAFSTIIFHLEDNVLLQVSDVETSEELWERLEQLFSRKSFRDRLY
        ++EV +F+G   F  W+ RM+ L++  Q+GL +     +   D ++     +++  A S I  HL D+V+  + D +T+  +W RLE L+  K+  ++LY
Subjt:  RFEVERFDGKADFVLWKMRMKALILLQQRGLPETTTTTTTAKDRVQ-----EMENIAFSTIIFHLEDNVLLQVSDVETSEELWERLEQLFSRKSFRDRLY

Query:  LKERFFGYKMDSSKNIEDNLEEFTKIAWDFSRIGAEVSDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGMVVNALRAKDKEMNEKRQEG--------
        LK++ +   M    N   +L  F  +    + +G ++ +ED+A++LL+SLPS Y+ +  +++HG + ++ +  V +AL   +K   +   +G        
Subjt:  LKERFFGYKMDSSKNIEDNLEEFTKIAWDFSRIGAEVSDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGMVVNALRAKDKEMNEKRQEG--------

Query:  ------------------------IERGRKCYHCQKEGHIRRNCPTLRKSK----------------------------------------EWILSSGCT
                                  R R CY+C + GH +R+CP  RK K                                        EW++ +  +
Subjt:  ------------------------IERGRKCYHCQKEGHIRRNCPTLRKSK----------------------------------------EWILSSGCT

Query:  MHMTPNKNYLIDFVETEETKVNGFNDQF-EVKGVGLVKIKTDDGQIRTLSNVKYVPNLTRNVISLGVLDDKGCFFMGDEGTLKIYKDSSLILKSKLTNGL
         H TP ++    +V  +   V   N  + ++ G+G + IKT+ G    L +V++VP+L  N+IS   LD  G          ++ K S +I K      L
Subjt:  MHMTPNKNYLIDFVETEETKVNGFNDQF-EVKGVGLVKIKTDDGQIRTLSNVKYVPNLTRNVISLGVLDDKGCFFMGDEGTLKIYKDSSLILKSKLTNGL

Query:  Y
        Y
Subjt:  Y

Arabidopsis top hits

e value

%identity

Alignment

AT3G21000.1 Gag-Pol-related retrotransposon family protein

2.8e-05

34.18

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Query:  WILSSGCTMHMTPNKNYLIDFVETEETKVNGFNDQ-FEVKGVGLVKIKTDDGQIRTLSNVKYVPNLTRNVISLGVLDDK
        WI+     ++MTP   Y      T +  V   +     V+G G VKI+  +G+ +T+ NV +VP L RNV+S G +  K
Subjt:  WILSSGCTMHMTPNKNYLIDFVETEETKVNGFNDQ-FEVKGVGLVKIKTDDGQIRTLSNVKYVPNLTRNVISLGVLDDK

Sequences

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CDS sequence

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ATGAACTTTGTGAATCATGAAATCTTGGAATTAGAATACAGAATTGTAAGAAATATGGCAGCAAGATTTGAAGTGGAGAGATTCGATGGAAAGGCAGATTTTGTGCTATG
GAAAATGAGGATGAAAGCACTTATACTTCTACAACAAAGAGGTCTTCCCGAGACGACGACGACGACGACGACAGCGAAGGATCGAGTTCAAGAAATGGAAAATATCGCCT
TCAGCACGATCATATTCCATTTGGAAGACAATGTGCTTCTCCAAGTCAGCGATGTTGAAACAAGTGAGGAGTTGTGGGAAAGATTGGAACAACTATTCTCAAGAAAATCG
TTTCGAGATAGGTTGTATCTAAAGGAGAGATTCTTCGGATACAAAATGGATTCCTCTAAGAATATTGAAGATAACTTGGAAGAGTTTACGAAGATTGCATGGGATTTTTC
AAGGATAGGAGCAGAGGTATCGGATGAAGATCAAGCTGTGATTCTTCTCAGCTCACTTCCAAGTATGTATAATGAAGTGAAAGATAGTTTAATACATGGGGTTAGAGATT
CATTAACTGTTGGGATGGTTGTGAATGCATTGAGAGCAAAGGATAAGGAAATGAATGAGAAAAGACAAGAAGGTATTGAAAGAGGTAGGAAGTGTTACCATTGCCAGAAA
GAAGGACATATTCGACGAAATTGTCCTACGCTGCGTAAGAGCAAGGAATGGATACTAAGTTCGGGGTGCACGATGCACATGACGCCGAACAAAAACTATTTGATTGATTT
CGTGGAAACGGAGGAAACAAAAGTGAATGGATTCAATGATCAGTTTGAAGTTAAAGGCGTAGGGTTAGTGAAGATCAAAACTGATGATGGGCAAATAAGAACTCTATCAA
ATGTTAAGTATGTACCAAATTTGACAAGAAATGTTATTTCTTTGGGAGTATTGGACGATAAGGGTTGTTTTTTCATGGGAGATGAAGGCACATTGAAGATATATAAAGAT
TCTTCACTCATATTGAAGAGCAAACTTACTAATGGTCTCTATATATTGGAAGGATCAGCAATTACAAATTGA

mRNA sequence

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AACCGAACCGATCAGATAGTTCCGAATCATTTTGGTTCGAATTTTAGCAAAAACAAAATCGAACCGATCAGAATTTAACGAAAACAAAACTATTCGAATCGGTTTGTTTC
ATCCAAACAATGGACCAAACCGAAGGTTCGATTGGGTTCAGTCCATTATTCGTCCGAACAACACAACTCGTGGTTTTATCACTTTTCTAATGGTGTTCGTTTCTTGACGG
AGTGTTTCTTCAGCCTCCACTTTGTTCATTAAGTTCATCGGTGATTGCAAAGTTAGAGGTTTCTTTCTTCTTAACTTCTCTGAATGCAACAATGATTCGATATTCATTTG
ATATTTTGAACTCAAAATCTTACCGAAACTTAGTTTGTTTTATTTTGTAACACTGTATGTAAACTAAGATTTAGGGTTTCATTTCTCTTTATCTCTGTTTGCCTTTCCTT
GTATGAACTTTGTGAATCATGAAATCTTGGAATTAGAATACAGAATTGTAAGAAATATGGCAGCAAGATTTGAAGTGGAGAGATTCGATGGAAAGGCAGATTTTGTGCTA
TGGAAAATGAGGATGAAAGCACTTATACTTCTACAACAAAGAGGTCTTCCCGAGACGACGACGACGACGACGACAGCGAAGGATCGAGTTCAAGAAATGGAAAATATCGC
CTTCAGCACGATCATATTCCATTTGGAAGACAATGTGCTTCTCCAAGTCAGCGATGTTGAAACAAGTGAGGAGTTGTGGGAAAGATTGGAACAACTATTCTCAAGAAAAT
CGTTTCGAGATAGGTTGTATCTAAAGGAGAGATTCTTCGGATACAAAATGGATTCCTCTAAGAATATTGAAGATAACTTGGAAGAGTTTACGAAGATTGCATGGGATTTT
TCAAGGATAGGAGCAGAGGTATCGGATGAAGATCAAGCTGTGATTCTTCTCAGCTCACTTCCAAGTATGTATAATGAAGTGAAAGATAGTTTAATACATGGGGTTAGAGA
TTCATTAACTGTTGGGATGGTTGTGAATGCATTGAGAGCAAAGGATAAGGAAATGAATGAGAAAAGACAAGAAGGTATTGAAAGAGGTAGGAAGTGTTACCATTGCCAGA
AAGAAGGACATATTCGACGAAATTGTCCTACGCTGCGTAAGAGCAAGGAATGGATACTAAGTTCGGGGTGCACGATGCACATGACGCCGAACAAAAACTATTTGATTGAT
TTCGTGGAAACGGAGGAAACAAAAGTGAATGGATTCAATGATCAGTTTGAAGTTAAAGGCGTAGGGTTAGTGAAGATCAAAACTGATGATGGGCAAATAAGAACTCTATC
AAATGTTAAGTATGTACCAAATTTGACAAGAAATGTTATTTCTTTGGGAGTATTGGACGATAAGGGTTGTTTTTTCATGGGAGATGAAGGCACATTGAAGATATATAAAG
ATTCTTCACTCATATTGAAGAGCAAACTTACTAATGGTCTCTATATATTGGAAGGATCAGCAATTACAAATTGATTTTGTGAGGAGCAGCAAACAGTGATAATTCCCTTT
CTTTTCTTTTTGTCTAAAAGATAGTACTTTGCATTTGTGAACATTGAACATGCATTAATATGATAGCCAAAGCTTCTACTGACTTCATGGAATGATTTGTTTTCAATTAC
AG

Protein sequence

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MNFVNHEILELEYRIVRNMAARFEVERFDGKADFVLWKMRMKALILLQQRGLPETTTTTTTAKDRVQEMENIAFSTIIFHLEDNVLLQVSDVETSEELWERLEQLFSRKS
FRDRLYLKERFFGYKMDSSKNIEDNLEEFTKIAWDFSRIGAEVSDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGMVVNALRAKDKEMNEKRQEGIERGRKCYHCQK
EGHIRRNCPTLRKSKEWILSSGCTMHMTPNKNYLIDFVETEETKVNGFNDQFEVKGVGLVKIKTDDGQIRTLSNVKYVPNLTRNVISLGVLDDKGCFFMGDEGTLKIYKD
SSLILKSKLTNGLYILEGSAITN

IVF0025694 (gene) of Melon (IVF77) v1 genome