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IVF0025811 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0025811
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass, expressed
Genome locationchr05:7835782..7836057
RNA-Seq ExpressionIVF0025811
SyntenyIVF0025811
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047409.1 retrotransposon protein, putative, Ty3-gypsy sub-class [Cucumis melo var. makuwa]3.51e-0833.57Show/hide
Query:  MPRTQFFYRRVKRGPATVSLFC-------IGHTCFELR--------------------------------------------------NSYFEDFSLHFW
        MP++QFFYR VK G  TVSL C       +GH    L+                                                  NSY EDFSLH W
Subjt:  MPRTQFFYRRVKRGPATVSLFC-------IGHTCFELR--------------------------------------------------NSYFEDFSLHFW

Query:  HRLSPIFRKNRLGSELVGKRTNVQPETIETMDNALPTCGEHSS
        +  S +  K    +EL G RT VQP  IE M NAL   GE SS
Subjt:  HRLSPIFRKNRLGSELVGKRTNVQPETIETMDNALPTCGEHSS

KAA0051945.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.22e-1655.88Show/hide
Query:  MPRTQFFYRRVKRGPATVSLFCIGHTCFELRNSYFEDFSLHFWHRLSPIFRKNRLGSELVGKRTNVQP
        MP T+F Y   K GP+TV LF IGH CFEL +SYFE+F+LH WH  S I+ K R GSEL G++    P
Subjt:  MPRTQFFYRRVKRGPATVSLFCIGHTCFELRNSYFEDFSLHFWHRLSPIFRKNRLGSELVGKRTNVQP

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]1.71e-0753.23Show/hide
Query:  FELRNSYFEDFSLHFWHRLSPIFRKNRLGSELVGKRTNVQPETIETMDNALPTCGEHSSGVR
        FEL++S  +DFSLH  HR S +F K R G ELV +RT VQ   IE M NAL   G  S G R
Subjt:  FELRNSYFEDFSLHFWHRLSPIFRKNRLGSELVGKRTNVQPETIETMDNALPTCGEHSSGVR

KAA0065520.1 retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo var. makuwa]3.73e-2149.54Show/hide
Query:  QFFYRRVKRGPATVSLFCIGHTCFELRNSY---------------------------FEDFSLHFWHRLSPIFRKNRLGSELVGKRTNVQPETIETMDNA
        Q+FYRRVK  P  V LFC+GH  FELR+SY                            E FSL+FWHR SP+F K R  SE++  RT VQPETIE M NA
Subjt:  QFFYRRVKRGPATVSLFCIGHTCFELRNSY---------------------------FEDFSLHFWHRLSPIFRKNRLGSELVGKRTNVQPETIETMDNA

Query:  LPTCGEHSS
        LPT GE SS
Subjt:  LPTCGEHSS

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]7.74e-1266.67Show/hide
Query:  EDFSLHFWHRLSPIFRKNRLGSELVGKRTNVQPETIETMDNALPTCGEHSS
        +DFSLH WH  SPIF + R GSELVG+RT VQ  TIE + NALPT GE SS
Subjt:  EDFSLHFWHRLSPIFRKNRLGSELVGKRTNVQPETIETMDNALPTCGEHSS

TrEMBL top hitse value%identityAlignment
A0A5A7U1Q6 Retrotransposon protein, putative, Ty3-gypsy sub-class4.3e-0633.57Show/hide
Query:  MPRTQFFYRRVKRGPATVSLFC-------IGHTCFEL--------------------------------------------------RNSYFEDFSLHFW
        MP++QFFYR VK G  TVSL C       +GH    L                                                  +NSY EDFSLH W
Subjt:  MPRTQFFYRRVKRGPATVSLFC-------IGHTCFEL--------------------------------------------------RNSYFEDFSLHFW

Query:  HRLSPIFRKNRLGSELVGKRTNVQPETIETMDNALPTCGEHSS
        +  S +  K    +EL G RT VQP  IE M NAL   GE SS
Subjt:  HRLSPIFRKNRLGSELVGKRTNVQPETIETMDNALPTCGEHSS

A0A5A7VEB1 Retrotransposon protein, putative, Ty3-gypsy subclass, expressed3.2e-1749.54Show/hide
Query:  QFFYRRVKRGPATVSLFCIGHTCFELRNSY---------------------------FEDFSLHFWHRLSPIFRKNRLGSELVGKRTNVQPETIETMDNA
        Q+FYRRVK  P  V LFC+GH  FELR+SY                            E FSL+FWHR SP+F K R  SE++  RT VQPETIE M NA
Subjt:  QFFYRRVKRGPATVSLFCIGHTCFELRNSY---------------------------FEDFSLHFWHRLSPIFRKNRLGSELVGKRTNVQPETIETMDNA

Query:  LPTCGEHSS
        LPT GE SS
Subjt:  LPTCGEHSS

A0A5A7VGQ5 Uncharacterized protein2.1e-0553.23Show/hide
Query:  FELRNSYFEDFSLHFWHRLSPIFRKNRLGSELVGKRTNVQPETIETMDNALPTCGEHSSGVR
        FEL++S  +DFSLH  HR S +F K R G ELV +RT VQ   IE M NAL   G  S G R
Subjt:  FELRNSYFEDFSLHFWHRLSPIFRKNRLGSELVGKRTNVQPETIETMDNALPTCGEHSSGVR

A0A5D3BG85 Uncharacterized protein5.4e-0966.67Show/hide
Query:  EDFSLHFWHRLSPIFRKNRLGSELVGKRTNVQPETIETMDNALPTCGEHSS
        +DFSLH WH  SPIF + R GSELVG+RT VQ  TIE + NALPT GE SS
Subjt:  EDFSLHFWHRLSPIFRKNRLGSELVGKRTNVQPETIETMDNALPTCGEHSS

A0A5D3CKZ2 Pentatricopeptide repeat-containing protein3.1e-1255.88Show/hide
Query:  MPRTQFFYRRVKRGPATVSLFCIGHTCFELRNSYFEDFSLHFWHRLSPIFRKNRLGSELVGKRTNVQP
        MP T+F Y   K GP+TV LF IGH CFEL +SYFE+F+LH WH  S I+ K R GSEL G++    P
Subjt:  MPRTQFFYRRVKRGPATVSLFCIGHTCFELRNSYFEDFSLHFWHRLSPIFRKNRLGSELVGKRTNVQP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCGGACTCAGTTTTTCTATCGTCGAGTAAAAAGAGGTCCTGCAACGGTTTCTTTGTTTTGTATTGGTCATACATGCTTTGAGCTTCGAAACTCCTACTTTGAGGA
CTTTAGTCTACACTTTTGGCATCGTCTCTCACCCATTTTTCGAAAGAATAGGTTGGGAAGCGAGCTCGTTGGAAAGAGAACTAATGTGCAACCCGAAACGATCGAAACGA
TGGACAATGCTCTTCCAACGTGTGGCGAACACTCATCCGGTGTCAGAAACAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTCGGACTCAGTTTTTCTATCGTCGAGTAAAAAGAGGTCCTGCAACGGTTTCTTTGTTTTGTATTGGTCATACATGCTTTGAGCTTCGAAACTCCTACTTTGAGGA
CTTTAGTCTACACTTTTGGCATCGTCTCTCACCCATTTTTCGAAAGAATAGGTTGGGAAGCGAGCTCGTTGGAAAGAGAACTAATGTGCAACCCGAAACGATCGAAACGA
TGGACAATGCTCTTCCAACGTGTGGCGAACACTCATCCGGTGTCAGAAACAAGTGA
Protein sequenceShow/hide protein sequence
MPRTQFFYRRVKRGPATVSLFCIGHTCFELRNSYFEDFSLHFWHRLSPIFRKNRLGSELVGKRTNVQPETIETMDNALPTCGEHSSGVRNK