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IVF0025902 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0025902
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon gag protein
Genome locationchr06:11488958..11489467
RNA-Seq ExpressionIVF0025902
SyntenyIVF0025902
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039121.1 hypothetical protein E6C27_scaffold121G00100 [Cucumis melo var. makuwa]2.68e-2761.26Show/hide
Query:  VVSNMLQPR---RSSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSSSSFFHTCCTLEDLHLHLHFQCSAAEAFLIFIFN--VARRRKSSSSSL
        + S++LQPR    SSS MCYSRED HLHLLTCV  E IIIFIFSH+LQ RGSSSS  H CC+ ED HLHL F C A E  +I IF+  +  +  SS SS 
Subjt:  VVSNMLQPR---RSSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSSSSFFHTCCTLEDLHLHLHFQCSAAEAFLIFIFN--VARRRKSSSSSL

Query:  MQYSRNDHHLH
        M  SR DHHLH
Subjt:  MQYSRNDHHLH

KAA0048558.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.33e-107100Show/hide
Query:  MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAAKKIVVSNMLQPRRSSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSS
        MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAAKKIVVSNMLQPRRSSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSS
Subjt:  MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAAKKIVVSNMLQPRRSSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSS

Query:  SSFFHTCCTLEDLHLHLHFQCSAAEAFLIFIFNVARRRKSSSSSLMQYSRNDHHLHGPSSLSSIRAQQK
        SSFFHTCCTLEDLHLHLHFQCSAAEAFLIFIFNVARRRKSSSSSLMQYSRNDHHLHGPSSLSSIRAQQK
Subjt:  SSFFHTCCTLEDLHLHLHFQCSAAEAFLIFIFNVARRRKSSSSSLMQYSRNDHHLHGPSSLSSIRAQQK

KAA0051997.1 hypothetical protein E6C27_scaffold60G004810 [Cucumis melo var. makuwa]7.76e-3348.42Show/hide
Query:  MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAAKKI-------VVSNMLQPRRSSSLMCYSREDHHLHLLTCVVIEEIIIFIFSH-
        ML  RRSS +     +   LKY   +KI+VS +  +R+  R KYVAAKKI       VVSN+LQPRRSSS MC +REDHHLHLLTCVVIEEIIIFIFSH 
Subjt:  MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAAKKI-------VVSNMLQPRRSSSLMCYSREDHHLHLLTCVVIEEIIIFIFSH-

Query:  ---------------------VLQPRGSSSSFFHTCCTLEDLHLHL------HFQCSAAEAFLIFIFNVARRRKSSSSSLMQYSRNDHHL
                             V QP+ SSSS         D HLHL      + QC   E  +IFIFN+ ++R+ SSSS M  S +DHHL
Subjt:  ---------------------VLQPRGSSSSFFHTCCTLEDLHLHL------HFQCSAAEAFLIFIFNVARRRKSSSSSLMQYSRNDHHL

KAA0061611.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.20e-7278.36Show/hide
Query:  MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAAKKIVVSNMLQPRRSSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSS
        MLQ RRSSS+IC N+E RRLKYV  KKI               +V+ KKIVVSNMLQPRRSSSLMCYSREDHHLHLLT V IE IIIFIFSHVLQPRGSS
Subjt:  MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAAKKIVVSNMLQPRRSSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSS

Query:  SSFFHTCCTLEDLHLHLHFQCSAAEAFL--IFIFNVARRRKSSSSSLMQYSRNDHHLHGPSSLSSIRAQQK
        S FFHTCCTLEDLHLHLHFQCS AEAFL  IFIFNVAR ++SSSSSLM+YSRNDHHLHGP SLSSIRAQQK
Subjt:  SSFFHTCCTLEDLHLHLHFQCSAAEAFL--IFIFNVARRRKSSSSSLMQYSRNDHHLHGPSSLSSIRAQQK

TYK02186.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.87e-2445.56Show/hide
Query:  IVVSNMCSSRKCHRFKYVAAKKIVV---SNMLQPRRSSSL---MCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSSSSFFHTC--------------
        I+ S+  SS+       + AK+I++   S++LQPR SSS    +C SREDHHLHLLTCV  E  IIFIFSHVLQ RGSSSS FH C              
Subjt:  IVVSNMCSSRKCHRFKYVAAKKIVV---SNMLQPRRSSSL---MCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSSSSFFHTC--------------

Query:  -----------CTLEDLHL-------HLHF-QCSAAEAFLIFIFNVARRRKS-SSSSLMQYSRNDHHLH
                   C+ +DLHL       HLH   C+AA+  +IFIFN+ ++R S SSSS +  SR D HLH
Subjt:  -----------CTLEDLHL-------HLHF-QCSAAEAFLIFIFNVARRRKS-SSSSLMQYSRNDHHLH

TrEMBL top hitse value%identityAlignment
A0A5A7TBX4 Uncharacterized protein2.5e-2361.26Show/hide
Query:  VVSNMLQPR---RSSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSSSSFFHTCCTLEDLHLHLHFQCSAAEAFLIFIFN--VARRRKSSSSSL
        + S++LQPR    SSS MCYSRED HLHLLTCV  E IIIFIFSH+LQ RGSSSS  H CC+ ED HLHL F C A E  +I IF+  +  +  SS SS 
Subjt:  VVSNMLQPR---RSSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSSSSFFHTCCTLEDLHLHLHFQCSAAEAFLIFIFN--VARRRKSSSSSL

Query:  MQYSRNDHHLH
        M  SR DHHLH
Subjt:  MQYSRNDHHLH

A0A5A7UC34 Uncharacterized protein2.8e-2748.42Show/hide
Query:  MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAA-------KKIVVSNMLQPRRSSSLMCYSREDHHLHLLTCVVIEEIIIFIFSH-
        ML  RRSS +     +   LKY   +KI+VS +  +R+  R KYVAA       KKIVVSN+LQPRRSSS MC +REDHHLHLLTCVVIEEIIIFIFSH 
Subjt:  MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAA-------KKIVVSNMLQPRRSSSLMCYSREDHHLHLLTCVVIEEIIIFIFSH-

Query:  ---------------------VLQPRGSSSSFFHTCCTLEDLHLHL------HFQCSAAEAFLIFIFNVARRRKSSSSSLMQYSRNDHHL
                             V QP+ SSSS         D HLHL      + QC   E  +IFIFN+ ++R+ SSSS M  S +DHHL
Subjt:  ---------------------VLQPRGSSSSFFHTCCTLEDLHLHL------HFQCSAAEAFLIFIFNVARRRKSSSSSLMQYSRNDHHL

A0A5A7V7A0 Retrotransposon gag protein3.3e-6078.36Show/hide
Query:  MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAAKKIVVSNMLQPRRSSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSS
        MLQ RRSSS+IC N+E RRLKYV  KKI               +V+ KKIVVSNMLQPRRSSSLMCYSREDHHLHLLT V IE IIIFIFSHVLQPRG S
Subjt:  MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAAKKIVVSNMLQPRRSSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSS

Query:  SSFFHTCCTLEDLHLHLHFQCSAAEAF--LIFIFNVARRRKSSSSSLMQYSRNDHHLHGPSSLSSIRAQQK
        SSFFHTCCTLEDLHLHLHFQCS AEAF  LIFIFNVAR ++SSSSSLM+YSRNDHHLHGP SLSSIRAQQK
Subjt:  SSFFHTCCTLEDLHLHLHFQCSAAEAF--LIFIFNVARRRKSSSSSLMQYSRNDHHLHGPSSLSSIRAQQK

A0A5D3BVC5 Retrotransposon gag protein2.0e-2045.56Show/hide
Query:  IVVSNMCSSRKCHRFKYVAAKKIVV---SNMLQPR---RSSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSSSSFFH----------------
        I+ S+  SS+       + AK+I++   S++LQPR    SSS +C SREDHHLHLLTCV  E  IIFIFSHVLQ RGSSSS FH                
Subjt:  IVVSNMCSSRKCHRFKYVAAKKIVV---SNMLQPR---RSSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSSSSFFH----------------

Query:  ---------TCCTLEDLHL-------HLH-FQCSAAEAFLIFIFNVARRRKS-SSSSLMQYSRNDHHLH
                  CC+ +DLHL       HLH   C+AA+  +IFIFN+ ++R S SSSS +  SR D HLH
Subjt:  ---------TCCTLEDLHL-------HLH-FQCSAAEAFLIFIFNVARRRKS-SSSSLMQYSRNDHHLH

A0A5D3DYN4 Retrotransposon gag protein1.3e-88100Show/hide
Query:  MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAAKKIVVSNMLQPRRSSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSS
        MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAAKKIVVSNMLQPRRSSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSS
Subjt:  MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAAKKIVVSNMLQPRRSSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSS

Query:  SSFFHTCCTLEDLHLHLHFQCSAAEAFLIFIFNVARRRKSSSSSLMQYSRNDHHLHGPSSLSSIRAQQK
        SSFFHTCCTLEDLHLHLHFQCSAAEAFLIFIFNVARRRKSSSSSLMQYSRNDHHLHGPSSLSSIRAQQK
Subjt:  SSFFHTCCTLEDLHLHLHFQCSAAEAFLIFIFNVARRRKSSSSSLMQYSRNDHHLHGPSSLSSIRAQQK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCAGTCGAGAAGGTCGTCGTCTCGAATATGTTGTAATCGAGAATGTCGTCGTCTCAAATATGTTACAACCAAGAAGATCGTCGTCTCAAATATGTGTAGCAGCCG
AAAATGTCATCGTTTCAAATATGTTGCAGCCAAAAAGATCGTCGTCTCAAATATGTTACAGCCAAGAAGATCATCGTCTCTAATGTGTTACAGCCGAGAGGATCATCATC
TTCATCTTCTTACATGTGTTGTAATCGAGGAGATCATCATCTTCATCTTCTCACATGTGTTGCAGCCAAGAGGATCTTCATCTTCATTTTTTCACACATGTTGCACTTTA
GAGGATCTTCATCTTCATCTTCATTTTCAATGTAGCGCGGCCGAGGCATTCCTCATCTTCATCTTCAATGTGGCACGGCGCAGAAAATCATCATCTTCATCTTTAATGCA
GTATAGTAGAAACGATCATCATCTTCATGGACCATCATCTCTATCTTCAATACGGGCACAACAGAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGCAGTCGAGAAGGTCGTCGTCTCGAATATGTTGTAATCGAGAATGTCGTCGTCTCAAATATGTTACAACCAAGAAGATCGTCGTCTCAAATATGTGTAGCAGCCG
AAAATGTCATCGTTTCAAATATGTTGCAGCCAAAAAGATCGTCGTCTCAAATATGTTACAGCCAAGAAGATCATCGTCTCTAATGTGTTACAGCCGAGAGGATCATCATC
TTCATCTTCTTACATGTGTTGTAATCGAGGAGATCATCATCTTCATCTTCTCACATGTGTTGCAGCCAAGAGGATCTTCATCTTCATTTTTTCACACATGTTGCACTTTA
GAGGATCTTCATCTTCATCTTCATTTTCAATGTAGCGCGGCCGAGGCATTCCTCATCTTCATCTTCAATGTGGCACGGCGCAGAAAATCATCATCTTCATCTTTAATGCA
GTATAGTAGAAACGATCATCATCTTCATGGACCATCATCTCTATCTTCAATACGGGCACAACAGAAATGA
Protein sequenceShow/hide protein sequence
MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAAKKIVVSNMLQPRRSSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSSSSFFHTCCTL
EDLHLHLHFQCSAAEAFLIFIFNVARRRKSSSSSLMQYSRNDHHLHGPSSLSSIRAQQK