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IVF0025931 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0025931
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase
Genome locationchr01:16303866..16304117
RNA-Seq ExpressionIVF0025931
SyntenyIVF0025931
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032024.1 Integrase, catalytic core [Cucumis melo var. makuwa]2.38e-3985.54Show/hide
Query:  MRRQSEDSNLQKKLGKSKKGLEVEFELRTDGAIIKQGRLYVPNISELKDAILEEACNSAYAMHPSRTKMYRTLKKTYWWPRMK
        +RRQSEDSNLQKKLG SKKGLEVEFELR DGAI+KQGRL VPN SELK+AIL E  +SAYAMHPS TKMYRTLKKTYWWPRMK
Subjt:  MRRQSEDSNLQKKLGKSKKGLEVEFELRTDGAIIKQGRLYVPNISELKDAILEEACNSAYAMHPSRTKMYRTLKKTYWWPRMK

KAA0048433.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.74e-3686.75Show/hide
Query:  MRRQSEDSNLQKKLGKSKKGLEVEFELRTDGAIIKQGRLYVPNISELKDAILEEACNSAYAMHPSRTKMYRTLKKTYWWPRMK
        +RRQSEDSNLQKK  KSKKGLEVEFELRTDGAI+KQGRL VPNISELK+AILEEA +SAYAMHPS TKMYRTLKKTYWW  MK
Subjt:  MRRQSEDSNLQKKLGKSKKGLEVEFELRTDGAIIKQGRLYVPNISELKDAILEEACNSAYAMHPSRTKMYRTLKKTYWWPRMK

KAA0056683.1 polyprotein [Cucumis melo var. makuwa]3.80e-3884.34Show/hide
Query:  MRRQSEDSNLQKKLGKSKKGLEVEFELRTDGAIIKQGRLYVPNISELKDAILEEACNSAYAMHPSRTKMYRTLKKTYWWPRMK
        +RRQSEDSNLQKK  KSKK LEVEFELRTDGAI+KQGRL VPNISELK+AILEEA +SAYAMHP  TKMYRTLKKTYWW  MK
Subjt:  MRRQSEDSNLQKKLGKSKKGLEVEFELRTDGAIIKQGRLYVPNISELKDAILEEACNSAYAMHPSRTKMYRTLKKTYWWPRMK

TYK22326.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.37e-46100Show/hide
Query:  MRRQSEDSNLQKKLGKSKKGLEVEFELRTDGAIIKQGRLYVPNISELKDAILEEACNSAYAMHPSRTKMYRTLKKTYWWPRMK
        MRRQSEDSNLQKKLGKSKKGLEVEFELRTDGAIIKQGRLYVPNISELKDAILEEACNSAYAMHPSRTKMYRTLKKTYWWPRMK
Subjt:  MRRQSEDSNLQKKLGKSKKGLEVEFELRTDGAIIKQGRLYVPNISELKDAILEEACNSAYAMHPSRTKMYRTLKKTYWWPRMK

TYK28229.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.74e-3686.75Show/hide
Query:  MRRQSEDSNLQKKLGKSKKGLEVEFELRTDGAIIKQGRLYVPNISELKDAILEEACNSAYAMHPSRTKMYRTLKKTYWWPRMK
        +RRQSEDSNLQKK  KSKKGLEVEFELRTDGAI+KQGRL VPNISELK+AILEEA +SAYAMHPS TKMYRTLKKTYWW  MK
Subjt:  MRRQSEDSNLQKKLGKSKKGLEVEFELRTDGAIIKQGRLYVPNISELKDAILEEACNSAYAMHPSRTKMYRTLKKTYWWPRMK

TrEMBL top hitse value%identityAlignment
A0A5A7SLG7 Integrase, catalytic core2.3e-3085.54Show/hide
Query:  MRRQSEDSNLQKKLGKSKKGLEVEFELRTDGAIIKQGRLYVPNISELKDAILEEACNSAYAMHPSRTKMYRTLKKTYWWPRMK
        +RRQSEDSNLQKKLG SKKGLEVEFELR DGAI+KQGRL VPN SELK+AIL E  +SAYAMHPS TKMYRTLKKTYWWPRMK
Subjt:  MRRQSEDSNLQKKLGKSKKGLEVEFELRTDGAIIKQGRLYVPNISELKDAILEEACNSAYAMHPSRTKMYRTLKKTYWWPRMK

A0A5A7TXQ9 DNA/RNA polymerases superfamily protein1.3e-3086.75Show/hide
Query:  MRRQSEDSNLQKKLGKSKKGLEVEFELRTDGAIIKQGRLYVPNISELKDAILEEACNSAYAMHPSRTKMYRTLKKTYWWPRMK
        +RRQSEDSNLQKK  KSKKGLEVEFELRTDGAI+KQGRL VPNISELK+AILEEA +SAYAMHPS TKMYRTLKKTYWW  MK
Subjt:  MRRQSEDSNLQKKLGKSKKGLEVEFELRTDGAIIKQGRLYVPNISELKDAILEEACNSAYAMHPSRTKMYRTLKKTYWWPRMK

A0A5A7UNW0 Reverse transcriptase2.3e-3085.54Show/hide
Query:  MRRQSEDSNLQKKLGKSKKGLEVEFELRTDGAIIKQGRLYVPNISELKDAILEEACNSAYAMHPSRTKMYRTLKKTYWWPRMK
        +RRQSEDSNLQKKL KSKKGLEVEFELRTDGAI+KQGRL VPNI+ELK+AILEEA NSAYA HP  TKMY T KKTYWWPRMK
Subjt:  MRRQSEDSNLQKKLGKSKKGLEVEFELRTDGAIIKQGRLYVPNISELKDAILEEACNSAYAMHPSRTKMYRTLKKTYWWPRMK

A0A5D3DFF7 Putative DNA/RNA polymerases superfamily protein1.7e-38100Show/hide
Query:  MRRQSEDSNLQKKLGKSKKGLEVEFELRTDGAIIKQGRLYVPNISELKDAILEEACNSAYAMHPSRTKMYRTLKKTYWWPRMK
        MRRQSEDSNLQKKLGKSKKGLEVEFELRTDGAIIKQGRLYVPNISELKDAILEEACNSAYAMHPSRTKMYRTLKKTYWWPRMK
Subjt:  MRRQSEDSNLQKKLGKSKKGLEVEFELRTDGAIIKQGRLYVPNISELKDAILEEACNSAYAMHPSRTKMYRTLKKTYWWPRMK

A0A5D3DXZ3 DNA/RNA polymerases superfamily protein1.3e-3086.75Show/hide
Query:  MRRQSEDSNLQKKLGKSKKGLEVEFELRTDGAIIKQGRLYVPNISELKDAILEEACNSAYAMHPSRTKMYRTLKKTYWWPRMK
        +RRQSEDSNLQKK  KSKKGLEVEFELRTDGAI+KQGRL VPNISELK+AILEEA +SAYAMHPS TKMYRTLKKTYWW  MK
Subjt:  MRRQSEDSNLQKKLGKSKKGLEVEFELRTDGAIIKQGRLYVPNISELKDAILEEACNSAYAMHPSRTKMYRTLKKTYWWPRMK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAGACAGTCAGAGGACAGTAATTTACAGAAGAAGCTTGGAAAATCCAAGAAAGGCTTAGAGGTGGAGTTTGAACTGAGAACAGATGGAGCCATTATTAAACAGGG
AAGATTATATGTTCCGAATATCAGTGAGCTTAAGGATGCTATTCTAGAAGAAGCTTGTAATTCAGCTTATGCTATGCATCCAAGTAGAACCAAGATGTACAGAACTTTAA
AGAAGACTTATTGGTGGCCAAGAATGAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAAGACAGTCAGAGGACAGTAATTTACAGAAGAAGCTTGGAAAATCCAAGAAAGGCTTAGAGGTGGAGTTTGAACTGAGAACAGATGGAGCCATTATTAAACAGGG
AAGATTATATGTTCCGAATATCAGTGAGCTTAAGGATGCTATTCTAGAAGAAGCTTGTAATTCAGCTTATGCTATGCATCCAAGTAGAACCAAGATGTACAGAACTTTAA
AGAAGACTTATTGGTGGCCAAGAATGAAGTAA
Protein sequenceShow/hide protein sequence
MRRQSEDSNLQKKLGKSKKGLEVEFELRTDGAIIKQGRLYVPNISELKDAILEEACNSAYAMHPSRTKMYRTLKKTYWWPRMK