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IVF0025966 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0025966
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTropomyosin
Genome locationchr11:19431104..19431418
RNA-Seq ExpressionIVF0025966
SyntenyIVF0025966
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061866.1 tropomyosin [Cucumis melo var. makuwa]7.09e-53100Show/hide
Query:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGDAGAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGG
        MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGDAGAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGG
Subjt:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGDAGAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGG

Query:  AGGD
        AGGD
Subjt:  AGGD

KAE8645885.1 hypothetical protein Csa_017706 [Cucumis sativus]8.19e-5092.31Show/hide
Query:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGDAGAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGG
        MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKS R SKEGKHSS SDSSGNGN+G+  AASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSG 
Subjt:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGDAGAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGG

Query:  AGGD
        AGGD
Subjt:  AGGD

KAG6570682.1 hypothetical protein SDJN03_29597, partial [Cucurbita argyrosperma subsp. sororia]4.90e-3884.16Show/hide
Query:  SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGDAGAA-SATAVAAVAVTAVTMDALD-DDGGSTHVHGGEGGSGGA
        SSKICFCIPRHKN HK DGGSEKSSKSKPSRRKS  G+KEGKHSS SDSSGNGN+G A AA SA AVAA+AVTAVTMDA+D DDGGSTHVHGGEGG GG 
Subjt:  SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGDAGAA-SATAVAAVAVTAVTMDALD-DDGGSTHVHGGEGGSGGA

Query:  G
        G
Subjt:  G

KAG7010529.1 hypothetical protein SDJN02_27323, partial [Cucurbita argyrosperma subsp. argyrosperma]4.29e-4085.15Show/hide
Query:  SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGDAGAA-SATAVAAVAVTAVTMDALD-DDGGSTHVHGGEGGSGGA
        SSKICFCIPRHKN HK DGGSEKSSKSKPSRRKS  G+KEGKHSS SDSSGNGN+GDA AA SA AVAA+AVTAVTMDA+D DDGGSTHVHGGEGG GG 
Subjt:  SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGDAGAA-SATAVAAVAVTAVTMDALD-DDGGSTHVHGGEGGSGGA

Query:  G
        G
Subjt:  G

TYK15390.1 tropomyosin [Cucumis melo var. makuwa]4.23e-53100Show/hide
Query:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGDAGAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGG
        MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGDAGAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGG
Subjt:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGDAGAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGG

Query:  AGGD
        AGGD
Subjt:  AGGD

TrEMBL top hitse value%identityAlignment
A0A0A0KFD0 Uncharacterized protein1.6e-3692.31Show/hide
Query:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGDAGAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGG
        MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKS R SKEGKHSS SDSSGNGN+G+  AASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGS G
Subjt:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGDAGAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGG

Query:  AGGD
        AGGD
Subjt:  AGGD

A0A5A7V5U9 Tropomyosin6.6e-43100Show/hide
Query:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGDAGAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGG
        MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGDAGAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGG
Subjt:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGDAGAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGG

Query:  AGGD
        AGGD
Subjt:  AGGD

A0A5D3CVK1 Tropomyosin6.6e-43100Show/hide
Query:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGDAGAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGG
        MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGDAGAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGG
Subjt:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGDAGAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGG

Query:  AGGD
        AGGD
Subjt:  AGGD

A0A6J1D515 circumsporozoite protein-like2.0e-2373.33Show/hide
Query:  SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGD---AGAASATAVAAVAV---TAVTMDALDDDGGSTHVHGGEGG
        S+KICFCIPRHKNGHKA+GGSEKSSKSKPSRRKSRRG K GKHSS SDSSG+GN+     AG  S  AVAAV V   TA TMDA++DDGGS H HGG GG
Subjt:  SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGD---AGAASATAVAAVAV---TAVTMDALDDDGGSTHVHGGEGG

Query:  SGGAG
         GG G
Subjt:  SGGAG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTCCTCATCAAAGATTTGTTTCTGTATTCCTCGTCATAAAAATGGCCACAAAGCTGATGGAGGATCGGAGAAATCTTCCAAATCTAAGCCTTCTCGTCGCAAATC
TCGTCGAGGCTCAAAAGAAGGTAAGCATTCCTCTGGTAGTGATAGTAGTGGAAATGGAAACTCAGGTGATGCAGGTGCAGCCAGTGCCACTGCCGTGGCTGCTGTTGCGG
TCACAGCAGTGACCATGGATGCATTGGACGATGACGGTGGCAGTACCCATGTCCACGGTGGTGAGGGAGGCAGCGGAGGGGCTGGTGGAGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGTCCTCATCAAAGATTTGTTTCTGTATTCCTCGTCATAAAAATGGCCACAAAGCTGATGGAGGATCGGAGAAATCTTCCAAATCTAAGCCTTCTCGTCGCAAATC
TCGTCGAGGCTCAAAAGAAGGTAAGCATTCCTCTGGTAGTGATAGTAGTGGAAATGGAAACTCAGGTGATGCAGGTGCAGCCAGTGCCACTGCCGTGGCTGCTGTTGCGG
TCACAGCAGTGACCATGGATGCATTGGACGATGACGGTGGCAGTACCCATGTCCACGGTGGTGAGGGAGGCAGCGGAGGGGCTGGTGGAGACTAG
Protein sequenceShow/hide protein sequence
MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGDAGAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGGAGGD