CuGenDBv2

Gene ID	IVF0025975
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome location	chr04:11570857..11571378
RNA-Seq Expression	IVF0025975
Synteny	IVF0025975
Gene Ontology terms	GO:0010073 - meristem maintenance (biological process) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037866.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]

1.49e-113

100

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Query:  MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNP
        MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNP
Subjt:  MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNP

Query:  SSSYMHGHGRGRGEHNEYLYYEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE
        SSSYMHGHGRGRGEHNEYLYYEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE
Subjt:  SSSYMHGHGRGRGEHNEYLYYEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE

KAA0051233.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]

4.11e-79

89.86

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Query:  MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNP
        MYDV IVPAPVQR+RPLVQE DQLEEVDQH EEVPP+TQTQTQSEH+YVSP+MMMPTFGTTYYD GVGQSSDFGR YYNSEAG SSTDFGQQYYDLGS+P
Subjt:  MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNP

Query:  SSSYMHGHGRGRGEHNEYLYYEVPTTVPKQSDEQQQQE
        SSSYMH HGRGRGEHNEYLYYEVP  VPKQSDEQQQQE
Subjt:  SSSYMHGHGRGRGEHNEYLYYEVPTTVPKQSDEQQQQE

TYK09816.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]

2.79e-116

100

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Query:  MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNP
        MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNP
Subjt:  MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNP

Query:  SSSYMHGHGRGRGEHNEYLYYEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE
        SSSYMHGHGRGRGEHNEYLYYEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE
Subjt:  SSSYMHGHGRGRGEHNEYLYYEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE

XP_008449513.1 PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo]

4.46e-79

88.41

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Query:  MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNP
        MYDV IVPAPVQR+RPLVQE DQLEEVDQH EEVPP+TQTQTQSEH+YVSP+MMMPTFG TYYD GVGQSSDFGR YYNSEAG SSTDFGQQYYDLGS+P
Subjt:  MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNP

Query:  SSSYMHGHGRGRGEHNEYLYYEVPTTVPKQSDEQQQQE
        SSSYMHGHGRGRGEHNEYLYY+VP  VP+QSDEQQQQE
Subjt:  SSSYMHGHGRGRGEHNEYLYYEVPTTVPKQSDEQQQQE

XP_016900498.1 PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo]

2.33e-79

88.41

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Query:  MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNP
        MYDV IVPAPVQR+RPLVQE DQLEEVDQH EEVPP+TQTQTQSEH+YVSP+MMMPTFG TYYD GVGQSSDFGR YYNSEAG SSTDFGQQYYDLGS+P
Subjt:  MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNP

Query:  SSSYMHGHGRGRGEHNEYLYYEVPTTVPKQSDEQQQQE
        SSSYMHGHGRGRGEHNEYLYY+VP  VP+QSDEQQQQE
Subjt:  SSSYMHGHGRGRGEHNEYLYYEVPTTVPKQSDEQQQQE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T6Q6 Mediator of RNA polymerase II transcription subunit 12-like isoform X1

6.3e-91

100

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Query:  MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNP
        MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNP
Subjt:  MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNP

Query:  SSSYMHGHGRGRGEHNEYLYYEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE
        SSSYMHGHGRGRGEHNEYLYYEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE
Subjt:  SSSYMHGHGRGRGEHNEYLYYEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE

A0A5A7U5S8 Mediator of RNA polymerase II transcription subunit 12-like isoform X1

2.8e-62

79.14

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Query:  MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNP
        MYDV IVPAPVQR+RPLVQE DQLEEVDQH EEVPP+TQTQTQSEH+YVSP+MMMPTFGTTYYD GVGQSSDFGR YYNSEAG SSTDFGQQYYDLGS+P
Subjt:  MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNP

Query:  SSSYMHGHGRGRGEHNEYLYYEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQV
        SSSYMH HGRGRGEHNEYLYYEVP  VPKQSDEQQQQE        + +   +NQ EI   +V
Subjt:  SSSYMHGHGRGRGEHNEYLYYEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQV

A0A5D3CHF6 Mediator of RNA polymerase II transcription subunit 12-like isoform X1

6.3e-91

100

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Query:  MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNP
        MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNP
Subjt:  MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNP

Query:  SSSYMHGHGRGRGEHNEYLYYEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE
        SSSYMHGHGRGRGEHNEYLYYEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE
Subjt:  SSSYMHGHGRGRGEHNEYLYYEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE

A0A5D3D5R5 Mediator of RNA polymerase II transcription subunit 12-like isoform X1

1.8e-61

77.91

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Query:  MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNP
        MYDV IVPAPVQR+RPLVQE DQLEEVDQH EEVPP+TQTQTQSEH+YVSP+MMMPTFGTTYYD GVGQSSDFGR YYNSEAG SSTDFGQQYYDLGS+P
Subjt:  MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNP

Query:  SSSYMHGHGRGRGEHNEYLYYEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQV
        SSSYMHGHGRGRGEHNEYLYYEVP  VP+QS+E QQQE        + +   +NQ EI   +V
Subjt:  SSSYMHGHGRGRGEHNEYLYYEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQV

A0A5D3DUI1 Mediator of RNA polymerase II transcription subunit 12-like isoform X1

3.1e-61

77.3

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Query:  MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNP
        MYDV IVPAPVQR+RPLVQE DQLEEVDQH EEVPP+TQTQTQSEH+YVSP+MMMPTFG TYYD GVGQSSDFGR YYNSEAG SSTDFGQQYYDLGS+P
Subjt:  MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNP

Query:  SSSYMHGHGRGRGEHNEYLYYEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQV
        SSSYMHGHGRGRGEHNEYLYY+VP  VP+QSDEQQQQE        + +   +N  EI   +V
Subjt:  SSSYMHGHGRGRGEHNEYLYYEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTACGATGTCTCTATTGTACCTGCTCCAGTTCAGAGGAAACGTCCTCTAGTGCAAGAGCTCGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCCGT
GACACAGACACAGACACAAAGCGAGCATAGTTACGTTAGTCCATTAATGATGATGCCAACATTTGGAACGACATATTATGATTTAGGAGTCGGTCAATCGTCAGACTTTG
GAAGAGTATATTACAATTCAGAGGCAGGTCCATCATCAACGGACTTTGGGCAACAATACTATGATTTAGGGAGCAATCCATCGTCTTCATATATGCATGGTCACGGGCGT
GGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTACAACGGTACCCAAGCAATCAGATGAGCAACAACAACAAGAGATCAGGAGGAAATACAACAACAAAGA
GTTCAGAGTCGACGACGACAACCAACTAGAAATCGTCGACGTTCAGGTTGTGGAACACATTGATTTTTTTTTCTTTGAATGA

mRNA sequence

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Protein sequence

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MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGR
GRGEHNEYLYYEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE

IVF0025975 (gene) of Melon (IVF77) v1 genome