; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0025979 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0025979
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionhigh mobility group B protein 3-like
Genome locationchr11:9710228..9711783
RNA-Seq ExpressionIVF0025979
SyntenyIVF0025979
Gene Ontology termsGO:0006333 - chromatin assembly or disassembly (biological process)
GO:0000785 - chromatin (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003682 - chromatin binding (molecular function)
GO:0030527 - structural constituent of chromatin (molecular function)
InterPro domainsIPR009071 - High mobility group box domain
IPR031061 - High mobility group protein HMGB, plant
IPR036910 - High mobility group box domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK24219.1 high mobility group B protein 1-like isoform X2 [Cucumis melo var. makuwa]6.73e-75100Show/hide
Query:  MKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPT
        MKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPT
Subjt:  MKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPT

Query:  ESQKSTSEVNDDTEQEASSSS
        ESQKSTSEVNDDTEQEASSSS
Subjt:  ESQKSTSEVNDDTEQEASSSS

XP_008455869.1 PREDICTED: HMG1/2-like protein isoform X1 [Cucumis melo]5.48e-8894.81Show/hide
Query:  MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDA--------EKAPYAEK
        MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDA        EKAPYAEK
Subjt:  MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDA--------EKAPYAEK

Query:  ALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS
        ALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS
Subjt:  ALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS

XP_008455870.1 PREDICTED: high mobility group B protein 1-like isoform X2 [Cucumis melo]5.29e-91100Show/hide
Query:  MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEY
        MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEY
Subjt:  MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEY

Query:  EIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS
        EIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS
Subjt:  EIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS

XP_031737208.1 high mobility group B protein 3-like isoform X2 [Cucumis sativus]8.14e-7689.04Show/hide
Query:  MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEY
        MRALRNAVVTHKKPN QKLKQRKAEMKSTKSKKKDQNAPKRPAT FFVFMEEFR  +KEQFPDAKAGPVVGK GGEKWKSMSDAEKAPYAEKALKRKAEY
Subjt:  MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEY

Query:  EIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS
        EIALEAYKNN NC         MPTESQKSTSEVNDDTEQEASSSS
Subjt:  EIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS

XP_038902242.1 high mobility group B protein 1-like [Benincasa hispida]9.40e-7284.56Show/hide
Query:  MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKK---KDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRK
        MRALR+AVV+ KK NAQ LKQRK EMKSTKSKK   KDQNAPKRPATAFFVFMEEFR  FKE+FPDAKAGPVVGKAGGEKWKSMSD EKAPYAEKAL+RK
Subjt:  MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKK---KDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRK

Query:  AEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS
        AEYEIALEAYK N NC   AE E+EMPTESQKSTSEV+DD EQEASSSS
Subjt:  AEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS

TrEMBL top hitse value%identityAlignment
A0A1S3C1W5 HMG1/2-like protein isoform X11.4e-6794.81Show/hide
Query:  MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDA--------EKAPYAEK
        MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDA        EKAPYAEK
Subjt:  MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDA--------EKAPYAEK

Query:  ALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS
        ALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS
Subjt:  ALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS

A0A1S3C2L9 high mobility group B protein 1-like isoform X28.9e-70100Show/hide
Query:  MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEY
        MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEY
Subjt:  MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEY

Query:  EIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS
        EIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS
Subjt:  EIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS

A0A5A7UHY3 HMG1/2-like protein isoform X13.1e-5493.02Show/hide
Query:  MKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDA--------EKAPYAEKALKRKAEYEIALEAYKNNFNCYTVA
        MKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDA        EKAPYAEKALKRKAEYEIALEAYKNNFNCYTVA
Subjt:  MKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDA--------EKAPYAEKALKRKAEYEIALEAYKNNFNCYTVA

Query:  EPELEMPTESQKSTSEVNDDTEQEASSSS
        EPELEMPTESQKSTSEVND+TEQEASSSS
Subjt:  EPELEMPTESQKSTSEVNDDTEQEASSSS

A0A5D3DLQ9 High mobility group B protein 1-like isoform X26.6e-57100Show/hide
Query:  MKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPT
        MKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPT
Subjt:  MKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPT

Query:  ESQKSTSEVNDDTEQEASSSS
        ESQKSTSEVNDDTEQEASSSS
Subjt:  ESQKSTSEVNDDTEQEASSSS

A0A6J1G5W3 high mobility group B protein 3-like2.0e-5381.21Show/hide
Query:  MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSK---KKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRK
        MRAL+NAVVTHKKPNA+ LK+RKAEMKSTKS    KKDQNAPKRPATAFF+FMEEFR  FKE+FPDAKAGP VGKAGGEKWKSMSDAEKAPYAEK+L RK
Subjt:  MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSK---KKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRK

Query:  AEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS
        AEYEIALE YK   NC   AE E+EM TESQKSTS+V DD EQEASSSS
Subjt:  AEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS

SwissProt top hitse value%identityAlignment
O49595 High mobility group B protein 17.1e-2452.76Show/hide
Query:  KPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFN
        K  A   K  K E +  K  KKD N PKR  +AFFVF+E+FR+ FK++ P+ KA   VGKAGG+KWKSMS AEKAPY EKA KRKAEYE  ++AY  N  
Subjt:  KPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFN

Query:  CYTVAEPELEMPTESQKSTSEVNDDTE
                 E   ES+KS SE+ND+ E
Subjt:  CYTVAEPELEMPTESQKSTSEVNDDTE

O49596 High mobility group B protein 22.8e-2052.17Show/hide
Query:  KSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQK
        K+  KD N PKRPA+AFFVFME+FR  FK++ P  K+   VGKA G+KWKS+SD+EKAPY  KA KRK EYE  ++AY          E   +   ES K
Subjt:  KSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQK

Query:  STSEVNDDTEQEASS
        S SEVND+ + E  S
Subjt:  STSEVNDDTEQEASS

P26585 HMG1/2-like protein8.1e-2046.48Show/hide
Query:  VVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAY
        +  +KK  A K ++   + K+     KD N PKRP +AFFVFMEEFR +F ++ P+ KA   VGKA G KWK+MSDAEKAPY  K+ KRK EYE  + AY
Subjt:  VVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAY

Query:  KNNFNCYTVAEPELEMPT-----ESQKSTSEVNDDTEQEASS
                  + + E PT     ES+KS SEVND+ + E  S
Subjt:  KNNFNCYTVAEPELEMPT-----ESQKSTSEVNDDTEQEASS

P40619 HMG1/2-like protein1.7e-2251.88Show/hide
Query:  KKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNF
        K  N   +K++ A+ K TK   KD N PKRP +AFFVFME+FR  +KE+ P+ K+  VVGKAGG+KWK ++ AEKAP+  KA KRK EYE  L+AY N  
Subjt:  KKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNF

Query:  NCYTVAEPELEMPTESQKSTSEVNDDTEQEASS
             AE E     ES KS SEVNDD E +  S
Subjt:  NCYTVAEPELEMPTESQKSTSEVNDDTEQEASS

P93047 High mobility group B protein 36.6e-2251.18Show/hide
Query:  KLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVA
        KL   K   K  K   KD N PKRP++AFFVFME+FR+ +KE+ P  K+   VGKAGGEKWKS+SD+EKAPY  KA KRK EYE  ++AY          
Subjt:  KLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVA

Query:  EPELEMPTESQKSTSEVNDDTEQEASS
        E   +   ES KS SEVND+ + E  S
Subjt:  EPELEMPTESQKSTSEVNDDTEQEASS

Arabidopsis top hitse value%identityAlignment
AT1G20696.1 high mobility group B34.7e-2351.18Show/hide
Query:  KLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVA
        KL   K   K  K   KD N PKRP++AFFVFME+FR+ +KE+ P  K+   VGKAGGEKWKS+SD+EKAPY  KA KRK EYE  ++AY          
Subjt:  KLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVA

Query:  EPELEMPTESQKSTSEVNDDTEQEASS
        E   +   ES KS SEVND+ + E  S
Subjt:  EPELEMPTESQKSTSEVNDDTEQEASS

AT3G51880.1 high mobility group B15.0e-2552.76Show/hide
Query:  KPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFN
        K  A   K  K E +  K  KKD N PKR  +AFFVF+E+FR+ FK++ P+ KA   VGKAGG+KWKSMS AEKAPY EKA KRKAEYE  ++AY  N  
Subjt:  KPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFN

Query:  CYTVAEPELEMPTESQKSTSEVNDDTE
                 E   ES+KS SE+ND+ E
Subjt:  CYTVAEPELEMPTESQKSTSEVNDDTE

AT3G51880.2 high mobility group B15.0e-2552.76Show/hide
Query:  KPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFN
        K  A   K  K E +  K  KKD N PKR  +AFFVF+E+FR+ FK++ P+ KA   VGKAGG+KWKSMS AEKAPY EKA KRKAEYE  ++AY  N  
Subjt:  KPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFN

Query:  CYTVAEPELEMPTESQKSTSEVNDDTE
                 E   ES+KS SE+ND+ E
Subjt:  CYTVAEPELEMPTESQKSTSEVNDDTE

AT3G51880.3 high mobility group B15.0e-2552.76Show/hide
Query:  KPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFN
        K  A   K  K E +  K  KKD N PKR  +AFFVF+E+FR+ FK++ P+ KA   VGKAGG+KWKSMS AEKAPY EKA KRKAEYE  ++AY  N  
Subjt:  KPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFN

Query:  CYTVAEPELEMPTESQKSTSEVNDDTE
                 E   ES+KS SE+ND+ E
Subjt:  CYTVAEPELEMPTESQKSTSEVNDDTE

AT3G51880.4 high mobility group B15.0e-2552.76Show/hide
Query:  KPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFN
        K  A   K  K E +  K  KKD N PKR  +AFFVF+E+FR+ FK++ P+ KA   VGKAGG+KWKSMS AEKAPY EKA KRKAEYE  ++AY  N  
Subjt:  KPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFN

Query:  CYTVAEPELEMPTESQKSTSEVNDDTE
                 E   ES+KS SE+ND+ E
Subjt:  CYTVAEPELEMPTESQKSTSEVNDDTE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGCTCTCAGAAACGCCGTCGTCACTCACAAGAAACCCAACGCACAGAAGCTGAAGCAGAGAAAAGCTGAAATGAAATCCACGAAAAGTAAGAAGAAAGATCAAAA
TGCTCCAAAACGTCCAGCTACGGCATTCTTCGTTTTCATGGAGGAATTTAGAATGATGTTCAAGGAGCAATTTCCTGATGCAAAAGCTGGTCCAGTGGTCGGCAAAGCTG
GTGGTGAGAAATGGAAGTCCATGTCTGATGCTGAAAAAGCTCCGTACGCTGAAAAAGCTTTGAAAAGAAAGGCAGAATATGAAATAGCTCTTGAAGCATACAAGAACAAT
TTCAATTGCTACACGGTGGCTGAACCTGAACTCGAAATGCCAACAGAATCACAAAAATCAACCTCCGAGGTCAATGATGACACAGAGCAGGAAGCTAGCTCTAGCTCTTA
G
mRNA sequenceShow/hide mRNA sequence
ATGAGAGCTCTCAGAAACGCCGTCGTCACTCACAAGAAACCCAACGCACAGAAGCTGAAGCAGAGAAAAGCTGAAATGAAATCCACGAAAAGTAAGAAGAAAGATCAAAA
TGCTCCAAAACGTCCAGCTACGGCATTCTTCGTTTTCATGGAGGAATTTAGAATGATGTTCAAGGAGCAATTTCCTGATGCAAAAGCTGGTCCAGTGGTCGGCAAAGCTG
GTGGTGAGAAATGGAAGTCCATGTCTGATGCTGAAAAAGCTCCGTACGCTGAAAAAGCTTTGAAAAGAAAGGCAGAATATGAAATAGCTCTTGAAGCATACAAGAACAAT
TTCAATTGCTACACGGTGGCTGAACCTGAACTCGAAATGCCAACAGAATCACAAAAATCAACCTCCGAGGTCAATGATGACACAGAGCAGGAAGCTAGCTCTAGCTCTTA
G
Protein sequenceShow/hide protein sequence
MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNN
FNCYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS