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IVF0026033 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0026033
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description40S ribosomal protein S13
Genome locationchr11:12035051..12035206
RNA-Seq ExpressionIVF0026033
SyntenyIVF0026033
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000589 - Ribosomal protein S15
IPR009068 - S15/NS1, RNA-binding
IPR023029 - Ribosomal protein S15P


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043612.1 40S ribosomal protein S13 [Cucumis melo var. makuwa]3.66e-2084.91Show/hide
Query:  MCVFLLL--SKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS
        +C+ ++L  S GLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS
Subjt:  MCVFLLL--SKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS

KAA0046917.1 40S ribosomal protein S13-like [Cucumis melo var. makuwa]4.64e-2091.49Show/hide
Query:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS
        +L + GLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS
Subjt:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS

KAA0049888.1 40S ribosomal protein S13-like [Cucumis melo var. makuwa]4.64e-2091.49Show/hide
Query:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS
        +L + GLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS
Subjt:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS

ONK55068.1 uncharacterized protein A4U43_UnF7960 [Asparagus officinalis]8.88e-2082.35Show/hide
Query:  MCVFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS
        MC+ +    GLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILV+S
Subjt:  MCVFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS

TYK07625.1 40S ribosomal protein S13-like [Cucumis melo var. makuwa]4.64e-2091.49Show/hide
Query:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS
        +L + GLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS
Subjt:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS

TrEMBL top hitse value%identityAlignment
A0A0N4V0I2 40S ribosomal protein S132.4e-1487.76Show/hide
Query:  VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS
        V +L SKG+APEIPEDLYHLIKKAVSIRKHLERNRKDKDSK+RLILV+S
Subjt:  VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS

A0A0N5AK96 40S ribosomal protein S132.4e-1487.76Show/hide
Query:  VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS
        V +L SKG+APEIPEDLYHLIKKAVSIRKHLERNRKDKDSK+RLILV+S
Subjt:  VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS

A0A5A7TK12 40S ribosomal protein S131.4e-1484.91Show/hide
Query:  MCVFLLL--SKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS
        +C+ ++L  S GLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS
Subjt:  MCVFLLL--SKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS

A0A5A7U9F0 Putative ribosomal protein S131.8e-1489.36Show/hide
Query:  MCVFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLI
        MCVFLLLSKGLAPEIPEDLYHLIKK VSIRKHLERNRKDKDSK + +
Subjt:  MCVFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLI

A8UAD8 40S ribosomal protein S131.4e-1491.49Show/hide
Query:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS
        +L +KGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILV+S
Subjt:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS

SwissProt top hitse value%identityAlignment
P59223 40S ribosomal protein S13-14.2e-1687.23Show/hide
Query:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS
        +L + GLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILV+S
Subjt:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS

P59224 40S ribosomal protein S13-24.2e-1687.23Show/hide
Query:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS
        +L + GLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILV+S
Subjt:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS

P62299 40S ribosomal protein S133.2e-1683.67Show/hide
Query:  VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS
        V +L +KG+APEIPEDLYHLIKKAV+IRKHLERNRKDKDSK+RLILV+S
Subjt:  VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS

P62300 40S ribosomal protein S133.2e-1683.67Show/hide
Query:  VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS
        V +L +KG+APEIPEDLYHLIKKAV+IRKHLERNRKDKDSK+RLILV+S
Subjt:  VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS

P62302 40S ribosomal protein S131.9e-1689.36Show/hide
Query:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS
        +L + GLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILV+S
Subjt:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS

Arabidopsis top hitse value%identityAlignment
AT3G60770.1 Ribosomal protein S13/S153.0e-1787.23Show/hide
Query:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS
        +L + GLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILV+S
Subjt:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS

AT4G00100.1 ribosomal protein S13A3.0e-1787.23Show/hide
Query:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS
        +L + GLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILV+S
Subjt:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGTTTTTTTATTACTATCAAAAGGGCTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGCTGTCTCGATTAGAAAGCATTTGGAAAGGAATAG
GAAGGACAAAGACTCCAAGTTCAGGTTGATTCTTGTTGATTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTGTTTTTTTATTACTATCAAAAGGGCTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGCTGTCTCGATTAGAAAGCATTTGGAAAGGAATAG
GAAGGACAAAGACTCCAAGTTCAGGTTGATTCTTGTTGATTCTTGA
Protein sequenceShow/hide protein sequence
MCVFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS