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IVF0026045 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0026045
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRibonuclease H
Genome locationchr01:13526885..13527355
RNA-Seq ExpressionIVF0026045
SyntenyIVF0026045
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032022.1 RNA-directed DNA polymerase [Cucumis melo var. makuwa]9.08e-7472.97Show/hide
Query:  MFNVAYNEEVRPIRMEKYETPSYCMSIEQEPNSKPWYHDIKQYIACQE--------------KLAMKFFLSGEVLYKRNYDMTLLQCINAMEVKKILEEI
        MFNVAY+EEV+PIRMEKY+TPSYCMS+E+EP+SKPWYHDIK YIA +E              +LAMKFFL+GEVLYKRNYDMTLLQC++A+E +KILEEI
Subjt:  MFNVAYNEEVRPIRMEKYETPSYCMSIEQEPNSKPWYHDIKQYIACQE--------------KLAMKFFLSGEVLYKRNYDMTLLQCINAMEVKKILEEI

Query:  HEGVCGTHANGHMMARQVLRSGHFWLTM--DCIKYARKCHKCQIYHIK
        HEGVCG HANGHMMARQVLR+ +FWLTM  DCIKY R+CHKCQIY  K
Subjt:  HEGVCGTHANGHMMARQVLRSGHFWLTM--DCIKYARKCHKCQIYHIK

KAA0033220.1 putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa]6.02e-7172.41Show/hide
Query:  MFNVAYNEEVRPIRMEKYETPSYCMSIEQEPNSKPWYHDIKQYIACQE--------------KLAMKFFLSGEVLYKRNYDMTLLQCINAMEVKKILEEI
        MFNVAY+EEV+PIRMEKY+TPSYCMS+E++P+ KPWYHDIK YIA +E              +LAMKFFLSGEVLYKRNYDMTLL+C++A++ KK LEEI
Subjt:  MFNVAYNEEVRPIRMEKYETPSYCMSIEQEPNSKPWYHDIKQYIACQE--------------KLAMKFFLSGEVLYKRNYDMTLLQCINAMEVKKILEEI

Query:  HEGVCGTHANGHMMARQVLRSGHFWLTM--DCIKYARKCHKCQIY
        HEGVCGTHANGHMMARQ+LR+G+FWLTM  DCIKY R+CHKCQIY
Subjt:  HEGVCGTHANGHMMARQVLRSGHFWLTM--DCIKYARKCHKCQIY

KAA0037720.1 putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa]4.11e-6772.41Show/hide
Query:  MFNVAYNEEVRPIRMEKYETPSYCMSIEQEPNSKPWYHDIKQYIACQE--------------KLAMKFFLSGEVLYKRNYDMTLLQCINAMEVKKILEEI
        MFNVAY+EEV+PIRMEKY+TPSYCMS+E+EP+ KPWYHDIK YIA +E              +LAMKFFLSG+VLYKRNYDMTLL+C++A+E + ILEE 
Subjt:  MFNVAYNEEVRPIRMEKYETPSYCMSIEQEPNSKPWYHDIKQYIACQE--------------KLAMKFFLSGEVLYKRNYDMTLLQCINAMEVKKILEEI

Query:  HEGVCGTHANGHMMARQVLRSGHFWLTM--DCIKYARKCHKCQIY
        HEGVCGTHANG+MMARQVLRSG+FWLTM  DCIK+AR+CHKCQIY
Subjt:  HEGVCGTHANGHMMARQVLRSGHFWLTM--DCIKYARKCHKCQIY

TYK10941.1 putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa]5.31e-6873.1Show/hide
Query:  MFNVAYNEEVRPIRMEKYETPSYCMSIEQEPNSKPWYHDIKQYIACQE--------------KLAMKFFLSGEVLYKRNYDMTLLQCINAMEVKKILEEI
        MFNVAY EEV+PIRMEKY+TPSYCMS+E+EP+ KPWYHDIK YIA +E              +LAMKFFLSG+VLYKRNYDMTLL+C++A+E +KILEE 
Subjt:  MFNVAYNEEVRPIRMEKYETPSYCMSIEQEPNSKPWYHDIKQYIACQE--------------KLAMKFFLSGEVLYKRNYDMTLLQCINAMEVKKILEEI

Query:  HEGVCGTHANGHMMARQVLRSGHFWLTM--DCIKYARKCHKCQIY
        HEGVCGTHANG+MMARQVLRSG+FWLTM  DCIK+AR+CHKCQIY
Subjt:  HEGVCGTHANGHMMARQVLRSGHFWLTM--DCIKYARKCHKCQIY

XP_016903163.1 PREDICTED: uncharacterized protein LOC107990337 [Cucumis melo]2.69e-7072.41Show/hide
Query:  MFNVAYNEEVRPIRMEKYETPSYCMSIEQEPNSKPWYHDIKQYIACQE--------------KLAMKFFLSGEVLYKRNYDMTLLQCINAMEVKKILEEI
        MFNVAY+EEV+PIRMEKY+TPSYCMS+E+EP+ KPWYHDIK YIA +E              +LAMKFFLSG+VLYKRNYDMTLL+C++A+E + ILEE 
Subjt:  MFNVAYNEEVRPIRMEKYETPSYCMSIEQEPNSKPWYHDIKQYIACQE--------------KLAMKFFLSGEVLYKRNYDMTLLQCINAMEVKKILEEI

Query:  HEGVCGTHANGHMMARQVLRSGHFWLTM--DCIKYARKCHKCQIY
        HEGVCGTHANG+MMARQVLRSG+FWLTM  DCIK+AR+CHKCQIY
Subjt:  HEGVCGTHANGHMMARQVLRSGHFWLTM--DCIKYARKCHKCQIY

TrEMBL top hitse value%identityAlignment
A0A5A7SLW0 RNA-directed DNA polymerase2.4e-5672.97Show/hide
Query:  MFNVAYNEEVRPIRMEKYETPSYCMSIEQEPNSKPWYHDIKQYIACQE--------------KLAMKFFLSGEVLYKRNYDMTLLQCINAMEVKKILEEI
        MFNVAY+EEV+PIRMEKY+TPSYCMS+E+EP+SKPWYHDIK YIA +E              +LAMKFFL+GEVLYKRNYDMTLLQC++A+E +KILEEI
Subjt:  MFNVAYNEEVRPIRMEKYETPSYCMSIEQEPNSKPWYHDIKQYIACQE--------------KLAMKFFLSGEVLYKRNYDMTLLQCINAMEVKKILEEI

Query:  HEGVCGTHANGHMMARQVLRSGHFWLTM--DCIKYARKCHKCQIYHIK
        HEGVCG HANGHMMARQVLR+ +FWLTM  DCIKY R+CHKCQIY  K
Subjt:  HEGVCGTHANGHMMARQVLRSGHFWLTM--DCIKYARKCHKCQIYHIK

A0A5A7SQN1 Ribonuclease H9.3e-5672.41Show/hide
Query:  MFNVAYNEEVRPIRMEKYETPSYCMSIEQEPNSKPWYHDIKQYIACQE--------------KLAMKFFLSGEVLYKRNYDMTLLQCINAMEVKKILEEI
        MFNVAY+EEV+PIRMEKY+TPSYCMS+E++P+ KPWYHDIK YIA +E              +LAMKFFLSGEVLYKRNYDMTLL+C++A++ KK LEEI
Subjt:  MFNVAYNEEVRPIRMEKYETPSYCMSIEQEPNSKPWYHDIKQYIACQE--------------KLAMKFFLSGEVLYKRNYDMTLLQCINAMEVKKILEEI

Query:  HEGVCGTHANGHMMARQVLRSGHFWLTM--DCIKYARKCHKCQIY
        HEGVCGTHANGHMMARQ+LR+G+FWLTM  DCIKY R+CHKCQIY
Subjt:  HEGVCGTHANGHMMARQVLRSGHFWLTM--DCIKYARKCHKCQIY

A0A5A7T2W3 Putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H1.0e-5472.41Show/hide
Query:  MFNVAYNEEVRPIRMEKYETPSYCMSIEQEPNSKPWYHDIKQYIACQE--------------KLAMKFFLSGEVLYKRNYDMTLLQCINAMEVKKILEEI
        MFNVAY+EEV+PIRMEKY+TPSYCMS+E+EP+ KPWYHDIK YIA +E              +LAMKFFLSG+VLYKRNYDMTLL+C++A+E + ILEE 
Subjt:  MFNVAYNEEVRPIRMEKYETPSYCMSIEQEPNSKPWYHDIKQYIACQE--------------KLAMKFFLSGEVLYKRNYDMTLLQCINAMEVKKILEEI

Query:  HEGVCGTHANGHMMARQVLRSGHFWLTM--DCIKYARKCHKCQIY
        HEGVCGTHANG+MMARQVLRSG+FWLTM  DCIK+AR+CHKCQIY
Subjt:  HEGVCGTHANGHMMARQVLRSGHFWLTM--DCIKYARKCHKCQIY

A0A5A7TZF3 Ribonuclease H4.6e-5572.41Show/hide
Query:  MFNVAYNEEVRPIRMEKYETPSYCMSIEQEPNSKPWYHDIKQYIACQE--------------KLAMKFFLSGEVLYKRNYDMTLLQCINAMEVKKILEEI
        MFNVAY+EEV+PIRMEKY+TPSYCMS+E+EP+ K WYHDIK YIA +E              +LAMKFFLSGEVLYKRNYDMTLL+C++A+E K  LEEI
Subjt:  MFNVAYNEEVRPIRMEKYETPSYCMSIEQEPNSKPWYHDIKQYIACQE--------------KLAMKFFLSGEVLYKRNYDMTLLQCINAMEVKKILEEI

Query:  HEGVCGTHANGHMMARQVLRSGHFWLTM--DCIKYARKCHKCQIY
        HEGVCGTHANGHMMARQ+LR+G+FWLTM  DCIKY R+CHKCQIY
Subjt:  HEGVCGTHANGHMMARQVLRSGHFWLTM--DCIKYARKCHKCQIY

A0A5D3CGL1 Putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H6.0e-5573.1Show/hide
Query:  MFNVAYNEEVRPIRMEKYETPSYCMSIEQEPNSKPWYHDIKQYIACQE--------------KLAMKFFLSGEVLYKRNYDMTLLQCINAMEVKKILEEI
        MFNVAY EEV+PIRMEKY+TPSYCMS+E+EP+ KPWYHDIK YIA +E              +LAMKFFLSG+VLYKRNYDMTLL+C++A+E +KILEE 
Subjt:  MFNVAYNEEVRPIRMEKYETPSYCMSIEQEPNSKPWYHDIKQYIACQE--------------KLAMKFFLSGEVLYKRNYDMTLLQCINAMEVKKILEEI

Query:  HEGVCGTHANGHMMARQVLRSGHFWLTM--DCIKYARKCHKCQIY
        HEGVCGTHANG+MMARQVLRSG+FWLTM  DCIK+AR+CHKCQIY
Subjt:  HEGVCGTHANGHMMARQVLRSGHFWLTM--DCIKYARKCHKCQIY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTAATGTAGCTTACAATGAAGAAGTTCGACCCATAAGAATGGAGAAGTATGAGACACCATCTTATTGTATGAGCATTGAGCAAGAACCTAACAGTAAACCTTGGTA
TCATGATATTAAGCAATACATCGCATGTCAGGAAAAGTTAGCAATGAAGTTTTTTCTGAGTGGTGAAGTATTATACAAAAGAAATTACGATATGACTTTATTGCAATGTA
TTAATGCCATGGAAGTTAAAAAGATTTTGGAAGAAATTCATGAAGGAGTTTGTGGGACTCATGCAAATGGACATATGATGGCGAGACAAGTTTTACGTTCTGGTCACTTT
TGGTTGACCATGGACTGCATCAAATATGCGAGAAAATGCCATAAATGTCAAATATATCACATAAAGCACATGCTCCAACTTCTCTGCTACATGTATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTAATGTAGCTTACAATGAAGAAGTTCGACCCATAAGAATGGAGAAGTATGAGACACCATCTTATTGTATGAGCATTGAGCAAGAACCTAACAGTAAACCTTGGTA
TCATGATATTAAGCAATACATCGCATGTCAGGAAAAGTTAGCAATGAAGTTTTTTCTGAGTGGTGAAGTATTATACAAAAGAAATTACGATATGACTTTATTGCAATGTA
TTAATGCCATGGAAGTTAAAAAGATTTTGGAAGAAATTCATGAAGGAGTTTGTGGGACTCATGCAAATGGACATATGATGGCGAGACAAGTTTTACGTTCTGGTCACTTT
TGGTTGACCATGGACTGCATCAAATATGCGAGAAAATGCCATAAATGTCAAATATATCACATAAAGCACATGCTCCAACTTCTCTGCTACATGTATTGA
Protein sequenceShow/hide protein sequence
MFNVAYNEEVRPIRMEKYETPSYCMSIEQEPNSKPWYHDIKQYIACQEKLAMKFFLSGEVLYKRNYDMTLLQCINAMEVKKILEEIHEGVCGTHANGHMMARQVLRSGHF
WLTMDCIKYARKCHKCQIYHIKHMLQLLCYMY