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IVF0026052 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0026052
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionHistone H2B
Genome locationchr12:8471888..8474837
RNA-Seq ExpressionIVF0026052
SyntenyIVF0026052
Gene Ontology termsGO:0006334 - nucleosome assembly (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR000558 - Histone H2B
IPR007125 - Histone H2A/H2B/H3
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652780.1 hypothetical protein Csa_022685 [Cucumis sativus]3.65e-69100Show/hide
Query:  MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLAR
        MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLAR
Subjt:  MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLAR

Query:  YNKKPTITSREIQTAVRLVLPG
        YNKKPTITSREIQTAVRLVLPG
Subjt:  YNKKPTITSREIQTAVRLVLPG

XP_022964641.1 histone H2B.7-like [Cucurbita moschata]2.99e-6999.18Show/hide
Query:  MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLAR
        MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKK+AKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLAR
Subjt:  MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLAR

Query:  YNKKPTITSREIQTAVRLVLPG
        YNKKPTITSREIQTAVRLVLPG
Subjt:  YNKKPTITSREIQTAVRLVLPG

XP_022964661.1 histone H2B.7-like [Cucurbita moschata]2.99e-6999.18Show/hide
Query:  MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLAR
        MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDA+DKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLAR
Subjt:  MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLAR

Query:  YNKKPTITSREIQTAVRLVLPG
        YNKKPTITSREIQTAVRLVLPG
Subjt:  YNKKPTITSREIQTAVRLVLPG

XP_038893815.1 histone H2B.7-like [Benincasa hispida]1.04e-69100Show/hide
Query:  MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLAR
        MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLAR
Subjt:  MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLAR

Query:  YNKKPTITSREIQTAVRLVLPG
        YNKKPTITSREIQTAVRLVLPG
Subjt:  YNKKPTITSREIQTAVRLVLPG

XP_038894881.1 histone H2B.7 [Benincasa hispida]2.99e-6999.18Show/hide
Query:  MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLAR
        MAPKAEKKPAEKKPAAEEKKAEKAPAEKKP+AEKKLPKDASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLAR
Subjt:  MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLAR

Query:  YNKKPTITSREIQTAVRLVLPG
        YNKKPTITSREIQTAVRLVLPG
Subjt:  YNKKPTITSREIQTAVRLVLPG

TrEMBL top hitse value%identityAlignment
A0A0A0LV55 Histone H2B7.1e-53100Show/hide
Query:  MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLAR
        MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLAR
Subjt:  MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLAR

Query:  YNKKPTITSREIQTAVRLVLPG
        YNKKPTITSREIQTAVRLVLPG
Subjt:  YNKKPTITSREIQTAVRLVLPG

A0A5A7SNI2 Histone H2B7.1e-53100Show/hide
Query:  MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLAR
        MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLAR
Subjt:  MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLAR

Query:  YNKKPTITSREIQTAVRLVLPG
        YNKKPTITSREIQTAVRLVLPG
Subjt:  YNKKPTITSREIQTAVRLVLPG

A0A6J1HJI6 Histone H2B1.6e-5299.18Show/hide
Query:  MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLAR
        MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKK+AKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLAR
Subjt:  MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLAR

Query:  YNKKPTITSREIQTAVRLVLPG
        YNKKPTITSREIQTAVRLVLPG
Subjt:  YNKKPTITSREIQTAVRLVLPG

A0A6J1I3M0 Histone H2B1.6e-5299.18Show/hide
Query:  MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLAR
        MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDA+DKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLAR
Subjt:  MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLAR

Query:  YNKKPTITSREIQTAVRLVLPG
        YNKKPTITSREIQTAVRLVLPG
Subjt:  YNKKPTITSREIQTAVRLVLPG

A0A6J1I594 Histone H2B1.6e-5299.18Show/hide
Query:  MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLAR
        MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKK+AKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLAR
Subjt:  MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLAR

Query:  YNKKPTITSREIQTAVRLVLPG
        YNKKPTITSREIQTAVRLVLPG
Subjt:  YNKKPTITSREIQTAVRLVLPG

SwissProt top hitse value%identityAlignment
O22582 Histone H2B3.3e-4787.4Show/hide
Query:  MAPKAEKKPAEKKPAAEEKK-AEKAPAEKKPRAEKKLPKD----ASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQES
        MAPKAEKKPAEKKPA E+K  AEKAPAEKKP+A KKLPK+    A DKKKKR KKS+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+
Subjt:  MAPKAEKKPAEKKPAAEEKK-AEKAPAEKKPRAEKKLPKD----ASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQES

Query:  SKLARYNKKPTITSREIQTAVRLVLPG
        S+LARYNKKPTITSREIQTAVRLVLPG
Subjt:  SKLARYNKKPTITSREIQTAVRLVLPG

O23629 Histone H2B.61.6e-4685.38Show/hide
Query:  MAPKAEKKPAEKKPAA-----EEKKAEKAPAEKKPRAEKKLPKDA---SDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA
        MAP+AEKKPAEKKPAA     E+ KAEKAPAEKKP+A KKLPK+A    DKKKK  KKS+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA
Subjt:  MAPKAEKKPAEKKPAA-----EEKKAEKAPAEKKPRAEKKLPKDA---SDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA

Query:  QESSKLARYNKKPTITSREIQTAVRLVLPG
         ESSKLARYNKKPTITSREIQTAVRLVLPG
Subjt:  QESSKLARYNKKPTITSREIQTAVRLVLPG

P40283 Histone H2B.119.6e-4785.38Show/hide
Query:  MAPKAEKKPAEKKPAA-----EEKKAEKAPAEKKPRAEKKLPKDA---SDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA
        MAPKAEKKPAEKKPA+     E+ KAEKAPAEKKP+A KKLPK+A    DKKKK  KKS+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA
Subjt:  MAPKAEKKPAEKKPAA-----EEKKAEKAPAEKKPRAEKKLPKDA---SDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA

Query:  QESSKLARYNKKPTITSREIQTAVRLVLPG
        QE+SKLARYNKKPTITSREIQTAVRLVLPG
Subjt:  QESSKLARYNKKPTITSREIQTAVRLVLPG

Q9LQQ4 Histone H2B.19.6e-4786.72Show/hide
Query:  MAPKAEKKPAEKKPAA-----EEKKAEKAPAEKKPRAEKKL-PKDASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE
        MAP+AEKKPAEKK AA     E K AEKAPAEKKP+A KKL PK+A DKKKKR+KK++ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE
Subjt:  MAPKAEKKPAEKKPAA-----EEKKAEKAPAEKKPRAEKKL-PKDASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE

Query:  SSKLARYNKKPTITSREIQTAVRLVLPG
        SSKLARYNKKPTITSREIQTAVRLVLPG
Subjt:  SSKLARYNKKPTITSREIQTAVRLVLPG

Q9LZT0 Histone H2B.71.1e-4788Show/hide
Query:  MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDA---SDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSK
        MAPKAEKKPAEKKP  E+ KAEKAPAEKKP+A KKLPK+A    DKKKK  KKS+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSK
Subjt:  MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDA---SDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSK

Query:  LARYNKKPTITSREIQTAVRLVLPG
        LARYNKKPTITSREIQTAVRLVLPG
Subjt:  LARYNKKPTITSREIQTAVRLVLPG

Arabidopsis top hitse value%identityAlignment
AT1G07790.1 Histone superfamily protein6.8e-4886.72Show/hide
Query:  MAPKAEKKPAEKKPAA-----EEKKAEKAPAEKKPRAEKKL-PKDASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE
        MAP+AEKKPAEKK AA     E K AEKAPAEKKP+A KKL PK+A DKKKKR+KK++ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE
Subjt:  MAPKAEKKPAEKKPAA-----EEKKAEKAPAEKKPRAEKKL-PKDASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE

Query:  SSKLARYNKKPTITSREIQTAVRLVLPG
        SSKLARYNKKPTITSREIQTAVRLVLPG
Subjt:  SSKLARYNKKPTITSREIQTAVRLVLPG

AT2G28720.1 Histone superfamily protein9.9e-4784.73Show/hide
Query:  MAPK-----AEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDA----SDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKL
        MAPK     AEKKPAEK PA EEK AEKAPAEKKP+A KKLPK+A     +KKKKR KKS ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKL
Subjt:  MAPK-----AEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDA----SDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKL

Query:  AQESSKLARYNKKPTITSREIQTAVRLVLPG
        AQE+SKLARYNKKPTITSREIQTAVRLVLPG
Subjt:  AQESSKLARYNKKPTITSREIQTAVRLVLPG

AT3G45980.1 Histone superfamily protein1.2e-4785.38Show/hide
Query:  MAPKAEKKPAEKKPAA-----EEKKAEKAPAEKKPRAEKKLPKDA---SDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA
        MAP+AEKKPAEKKPAA     E+ KAEKAPAEKKP+A KKLPK+A    DKKKK  KKS+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA
Subjt:  MAPKAEKKPAEKKPAA-----EEKKAEKAPAEKKPRAEKKLPKDA---SDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA

Query:  QESSKLARYNKKPTITSREIQTAVRLVLPG
         ESSKLARYNKKPTITSREIQTAVRLVLPG
Subjt:  QESSKLARYNKKPTITSREIQTAVRLVLPG

AT3G46030.1 Histone superfamily protein8.1e-4988Show/hide
Query:  MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDA---SDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSK
        MAPKAEKKPAEKKP  E+ KAEKAPAEKKP+A KKLPK+A    DKKKK  KKS+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSK
Subjt:  MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDA---SDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSK

Query:  LARYNKKPTITSREIQTAVRLVLPG
        LARYNKKPTITSREIQTAVRLVLPG
Subjt:  LARYNKKPTITSREIQTAVRLVLPG

AT5G59910.1 Histone superfamily protein6.8e-4885.38Show/hide
Query:  MAPKAEKKPAEKKPAA-----EEKKAEKAPAEKKPRAEKKLPKDA---SDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA
        MAPKAEKKPAEKKPA+     E+ KAEKAPAEKKP+A KKLPK+A    DKKKK  KKS+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA
Subjt:  MAPKAEKKPAEKKPAA-----EEKKAEKAPAEKKPRAEKKLPKDA---SDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA

Query:  QESSKLARYNKKPTITSREIQTAVRLVLPG
        QE+SKLARYNKKPTITSREIQTAVRLVLPG
Subjt:  QESSKLARYNKKPTITSREIQTAVRLVLPG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCAAAGGCCGAGAAGAAGCCCGCCGAGAAGAAGCCAGCGGCGGAGGAGAAGAAGGCCGAGAAAGCTCCGGCGGAGAAGAAGCCAAGAGCCGAGAAGAAGCTTCC
CAAAGACGCCTCCGATAAGAAAAAGAAGAGAGCCAAGAAGAGCATTGAGACTTACAAGATCTACATCTTCAAAGTTCTCAAGCAAGTTCATCCTGATATCGGAATCTCCA
GTAAAGCCATGGGGATTATGAACAGCTTCATCAACGACATTTTTGAAAAGCTCGCTCAGGAATCCTCAAAGCTCGCTCGCTACAACAAGAAGCCGACTATCACCTCTCGG
GAGATCCAAACGGCGGTGCGCCTTGTTCTTCCTGGTTACAAGGAGGTGGGACCGGGCAAAACCTTTACATTTCAAGTTGGATTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCAAAGGCCGAGAAGAAGCCCGCCGAGAAGAAGCCAGCGGCGGAGGAGAAGAAGGCCGAGAAAGCTCCGGCGGAGAAGAAGCCAAGAGCCGAGAAGAAGCTTCC
CAAAGACGCCTCCGATAAGAAAAAGAAGAGAGCCAAGAAGAGCATTGAGACTTACAAGATCTACATCTTCAAAGTTCTCAAGCAAGTTCATCCTGATATCGGAATCTCCA
GTAAAGCCATGGGGATTATGAACAGCTTCATCAACGACATTTTTGAAAAGCTCGCTCAGGAATCCTCAAAGCTCGCTCGCTACAACAAGAAGCCGACTATCACCTCTCGG
GAGATCCAAACGGCGGTGCGCCTTGTTCTTCCTGGTTACAAGGAGGTGGGACCGGGCAAAACCTTTACATTTCAAGTTGGATTCTAATGGTCCCTGGGGATTTTCTGGAG
CAAATAGGGGTAACCCAAGGATTAGTGCCAAGTTTATCGCATTCAAGAAACAAGGTGGGAAACGGTGGTCACAAGTGACCAGAGGGACCCAAGCACGTTAGACTTGAGAC
TTGAAAAAAAGTCATCTGACGTAAAATTGGCAACACCCTACTGAATTTACCGGCAACTGTTTCTACATACTTTCCTTTTGTTTAATTGCTAAACACTACGAATCCCTTGT
AAACAAATTCTTATAGGTAATATGGATTTGCTCCTTCAATGTGCCAATGGGTCCTGGAAAGATTCGTTCATCATATAAAGGAGCCTTATAAAACATTTCAACCTGTGCAA
ACGCTCCTAATTGGTGCAACTGTTGTTTCTGCGGCCACCATCGGTATCCCTTCTACTTTACAGATATGTATTCTTCTCGCCAG
Protein sequenceShow/hide protein sequence
MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
EIQTAVRLVLPGYKEVGPGKTFTFQVGF