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IVF0026200 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0026200
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionzinc finger HIT domain-containing protein 3
Genome locationchr03:21115632..21119582
RNA-Seq ExpressionIVF0026200
SyntenyIVF0026200
Gene Ontology termsGO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000492 - box C/D snoRNP assembly (biological process)
GO:0048254 - snoRNA localization (biological process)
GO:0005634 - nucleus (cellular component)
GO:0070761 - pre-snoRNP complex (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR007529 - Zinc finger, HIT-type
IPR040197 - Zinc finger HIT domain-containing protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146755.1 zinc finger HIT domain-containing protein 3 isoform X5 [Cucumis sativus]4.90e-8393.98Show/hide
Query:  MAPRECQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEEDQSTAPNGSFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLRKFILA
        MAPR+CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSE DQSTA NG+FVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKL+KFILA
Subjt:  MAPRECQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEEDQSTAPNGSFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLRKFILA

Query:  IDSSLDPETELDKAMEDEAFRIFSSKISSIISS
        IDSS DPETE+DKAMEDEAFRIFSSKISSII+S
Subjt:  IDSSLDPETELDKAMEDEAFRIFSSKISSIISS

XP_008464779.1 PREDICTED: zinc finger HIT domain-containing protein 3 isoform X1 [Cucumis melo]2.73e-89100Show/hide
Query:  MAPRECQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEEDQSTAPNGSFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLRKFILA
        MAPRECQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEEDQSTAPNGSFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLRKFILA
Subjt:  MAPRECQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEEDQSTAPNGSFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLRKFILA

Query:  IDSSLDPETELDKAMEDEAFRIFSSKISSIISS
        IDSSLDPETELDKAMEDEAFRIFSSKISSIISS
Subjt:  IDSSLDPETELDKAMEDEAFRIFSSKISSIISS

XP_022157884.1 zinc finger HIT domain-containing protein 3 isoform X1 [Momordica charantia]1.57e-7285.71Show/hide
Query:  MAPRECQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEEDQSTAPNGSFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLRKFILA
        M PR+CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC +KPVS  DQSTAPNGS VDRPICV DQ+EVLEKSQLEAIASSSEI N LNDE L+K I A
Subjt:  MAPRECQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEEDQSTAPNGSFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLRKFILA

Query:  IDSSLDPETELDKAMEDEAFRIFSSKISSIISS
        I SS DPETELD+AMEDEAFRIFSSKISSII S
Subjt:  IDSSLDPETELDKAMEDEAFRIFSSKISSIISS

XP_022995777.1 zinc finger HIT domain-containing protein 3 [Cucurbita maxima]1.84e-7184.96Show/hide
Query:  MAPRECQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEEDQSTAPNGSFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLRKFILA
        M PR+CQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPC +KPVS EDQS APNGS VDRP+ VGDQNEVLEK+QLEAIASSSEI N LNDEKLR  I A
Subjt:  MAPRECQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEEDQSTAPNGSFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLRKFILA

Query:  IDSSLDPETELDKAMEDEAFRIFSSKISSIISS
        IDSS DPE ELDKAMEDEAFRI SSKISSII S
Subjt:  IDSSLDPETELDKAMEDEAFRIFSSKISSIISS

XP_038886971.1 zinc finger HIT domain-containing protein 3 [Benincasa hispida]1.34e-7183.46Show/hide
Query:  MAPRECQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEEDQSTAPNGSFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLRKFILA
        M PR+CQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPCAI+PVS  DQ TAPNGS VDRPI V DQNE+LEK QLEAIASSSEIH+ LN E+L+K ILA
Subjt:  MAPRECQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEEDQSTAPNGSFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLRKFILA

Query:  IDSSLDPETELDKAMEDEAFRIFSSKISSIISS
        IDSS DPETELDKAMEDEAF IFS+KISSII S
Subjt:  IDSSLDPETELDKAMEDEAFRIFSSKISSIISS

TrEMBL top hitse value%identityAlignment
A0A0A0KDK5 HIT-type domain-containing protein4.3e-6393.98Show/hide
Query:  MAPRECQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEEDQSTAPNGSFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLRKFILA
        MAPR+CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSE DQSTA NG+FVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKL+KFILA
Subjt:  MAPRECQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEEDQSTAPNGSFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLRKFILA

Query:  IDSSLDPETELDKAMEDEAFRIFSSKISSIISS
        IDSS DPETE+DKAMEDEAFRIFSSKISSII+S
Subjt:  IDSSLDPETELDKAMEDEAFRIFSSKISSIISS

A0A1S3CM88 zinc finger HIT domain-containing protein 3 isoform X17.6e-68100Show/hide
Query:  MAPRECQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEEDQSTAPNGSFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLRKFILA
        MAPRECQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEEDQSTAPNGSFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLRKFILA
Subjt:  MAPRECQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEEDQSTAPNGSFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLRKFILA

Query:  IDSSLDPETELDKAMEDEAFRIFSSKISSIISS
        IDSSLDPETELDKAMEDEAFRIFSSKISSIISS
Subjt:  IDSSLDPETELDKAMEDEAFRIFSSKISSIISS

A0A6J1DXU2 zinc finger HIT domain-containing protein 3 isoform X14.3e-5585.71Show/hide
Query:  MAPRECQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEEDQSTAPNGSFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLRKFILA
        M PR+CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC +KPVS  DQSTAPNGS VDRPICV DQ+EVLEKSQLEAIASSSEI N LNDE L+K I A
Subjt:  MAPRECQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEEDQSTAPNGSFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLRKFILA

Query:  IDSSLDPETELDKAMEDEAFRIFSSKISSIISS
        I SS DPETELD+AMEDEAFRIFSSKISSII S
Subjt:  IDSSLDPETELDKAMEDEAFRIFSSKISSIISS

A0A6J1ESW0 zinc finger HIT domain-containing protein 31.8e-5383.46Show/hide
Query:  MAPRECQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEEDQSTAPNGSFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLRKFILA
        M PR+CQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPC +KPVS EDQS APNGS VDRP+ VGDQNEVLEK+QLEAIASSSEI N LNDEKLR  I A
Subjt:  MAPRECQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEEDQSTAPNGSFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLRKFILA

Query:  IDSSLDPETELDKAMEDEAFRIFSSKISSIISS
        IDSS DPE ELDKAMEDEAFRI S KISSI+ S
Subjt:  IDSSLDPETELDKAMEDEAFRIFSSKISSIISS

A0A6J1JZX2 zinc finger HIT domain-containing protein 32.8e-5484.96Show/hide
Query:  MAPRECQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEEDQSTAPNGSFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLRKFILA
        M PR+CQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPC +KPVS EDQS APNGS VDRP+ VGDQNEVLEK+QLEAIASSSEI N LNDEKLR  I A
Subjt:  MAPRECQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEEDQSTAPNGSFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLRKFILA

Query:  IDSSLDPETELDKAMEDEAFRIFSSKISSIISS
        IDSS DPE ELDKAMEDEAFRI SSKISSII S
Subjt:  IDSSLDPETELDKAMEDEAFRIFSSKISSIISS

SwissProt top hitse value%identityAlignment
O36031 Uncharacterized zinc-finger protein C4F10.19c1.0e-0531.3Show/hide
Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEV--------PCAIKPVSE--EDQSTAPNGSFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLR
        C +CNE+  KYKCP C  PYCSL C+K H+              K V E       +PN  +V+  I    +  +  +S LE+I     I N++      
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEV--------PCAIKPVSE--EDQSTAPNGSFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLR

Query:  KFILAIDSSLDPETE
          I+    +LD E E
Subjt:  KFILAIDSSLDPETE

Q15649 Zinc finger HIT domain-containing protein 31.6e-0627.34Show/hide
Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC--AIKPVSEEDQSTAPNGSF-----VDRPICVGD------QNEVLEKSQLEAIASSSEIHNILNDE
        C +C E P KY+CP C  PYCS+VCF+KHKE  C    +PV ++ +S  P  +       D    + D      + + +    L+ +  S+ + ++L + 
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC--AIKPVSEEDQSTAPNGSF-----VDRPICVGD------QNEVLEKSQLEAIASSSEIHNILNDE

Query:  KLRKFILAIDSSLDPETELDKAMEDEAFRIFSSKISSII
         LR+ ++ +D   D    +   M++  F  F+     I+
Subjt:  KLRKFILAIDSSLDPETELDKAMEDEAFRIFSSKISSII

Q2KIH1 Zinc finger HIT domain-containing protein 31.8e-0558.97Show/hide
Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPV
        C VC E P KY+CP C  PYCSL CF+KHK  P    PV
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPV

Q6UIM1 Zinc finger HIT domain-containing protein 3 (Fragment)4.6e-0626.62Show/hide
Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC--AIKPVSEEDQSTAPNGSF-----VDRPICVGD------QNEVLEKSQLEAIASSSEIHNILNDE
        C +C E P KY+CP C  PYCS+ CF+KHKE  C    +PV ++ +S  P  +       D    + D      + + +    L+ +  S+ + ++L + 
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC--AIKPVSEEDQSTAPNGSF-----VDRPICVGD------QNEVLEKSQLEAIASSSEIHNILNDE

Query:  KLRKFILAIDSSLDPETELDKAMEDEAFRIFSSKISSII
         LR+ ++ +D   D    +   M++  F  F+     I+
Subjt:  KLRKFILAIDSSLDPETELDKAMEDEAFRIFSSKISSII

Q9CQK1 Zinc finger HIT domain-containing protein 37.9e-0625.37Show/hide
Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKE-VPCAIKPVSE-------EDQSTAPNGSFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLRKF
        C VC E P KY+CP C  PYCS+ CF+KHKE      +PV +         + +  + S V   +   ++ + +    L+ +  S  + ++L +  LR+ 
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKE-VPCAIKPVSE-------EDQSTAPNGSFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLRKF

Query:  ILAIDSSLDPETELDKAMEDEAFRIFSSKISSII
        ++++D   +    +   M++  F  F+     I+
Subjt:  ILAIDSSLDPETELDKAMEDEAFRIFSSKISSII

Arabidopsis top hitse value%identityAlignment
AT4G28820.1 HIT-type Zinc finger family protein1.4e-2646.34Show/hide
Query:  APRECQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKP----------------------------VSEEDQSTAPNGS-----FVDRPICVGDQN
        A + C++C +  SKYKCP CL PYCSL CFK HKE PCA KP                            V E+ Q  A   S      V RPI V ++ 
Subjt:  APRECQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKP----------------------------VSEEDQSTAPNGS-----FVDRPICVGDQN

Query:  EVLEKSQLEAIASSSEIHNILNDEKLRKFILAIDSSLDPETELDKAMEDEAFRIFSSKISSIIS
         +LEK+Q EAIASSSEI   L DE L+K I +IDSS +P  ELD+AM  EAFR F+ KI S IS
Subjt:  EVLEKSQLEAIASSSEIHNILNDEKLRKFILAIDSSLDPETELDKAMEDEAFRIFSSKISSIIS

AT4G28820.2 HIT-type Zinc finger family protein2.9e-2745.06Show/hide
Query:  APRECQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCA--IKPVSEEDQSTAPNGSF-----------------------------VDRPICVGDQNEV
        A + C++C +  SKYKCP CL PYCSL CFK HKE PCA    P S E++  +P                                 V RPI V ++  +
Subjt:  APRECQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCA--IKPVSEEDQSTAPNGSF-----------------------------VDRPICVGDQNEV

Query:  LEKSQLEAIASSSEIHNILNDEKLRKFILAIDSSLDPETELDKAMEDEAFRIFSSKISSIIS
        LEK+Q EAIASSSEI   L DE L+K I +IDSS +P  ELD+AM  EAFR F+ KI S IS
Subjt:  LEKSQLEAIASSSEIHNILNDEKLRKFILAIDSSLDPETELDKAMEDEAFRIFSSKISSIIS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCTCGGGAATGTCAGGTCTGCAATGAAGCACCATCCAAATACAAATGCCCCCTATGCCTTGCACCTTACTGCTCTCTGGTTTGTTTTAAGAAACACAAAGAAGT
GCCCTGTGCCATCAAGCCTGTGTCTGAAGAGGACCAATCAACTGCTCCCAATGGATCATTTGTAGATAGGCCAATATGTGTTGGAGACCAGAATGAAGTACTTGAAAAGT
CGCAGTTAGAGGCTATTGCTTCTTCCTCAGAAATACACAATATTTTGAATGATGAGAAACTCCGGAAGTTTATCCTTGCCATTGATAGCTCACTCGATCCAGAAACTGAA
CTTGATAAAGCTATGGAAGATGAAGCATTTCGCATTTTCAGTAGCAAGATATCATCCATCATCAGCTCTTAG
mRNA sequenceShow/hide mRNA sequence
TCAACTATTTCTAAATAATACTTTCCCCTTTTCTCTAAAGATTTTATCCTCAAACTTCCTTTCCCCTCGAAATCACTCCCTCGGGCTCAACTCCCTCACTCGCTCGTGCG
TCATTGCTCTGCCCTTGTCGATGATATCGCCCCATGTCTGCCATCGTCCTCTAAGCCTCGGTAAGCACAGACGGACCTCTCCATCTCTCTCTTTTTAAGTGCGAGATTCC
CTCACCCGCCGTTCACCCTCAATCCCTGAACTTGATCGCCGACGCAGCCCAGTCGTGACTGCCGTGCCCACGTCCTAAAACGTTTTTGCGACGAGCAGCTTAGAGTTCGA
ATGTGCTTAGCACTCCGTCCAGCAAGATTAAGGACGTTAGCCGGGCATTCGTGTTAGTTTGGAACCCATTCAAACACGACCAACAGCATTTAGGATTAAGAAATTCATCA
TTCTATGGCTCCTCGGGAATGTCAGGTCTGCAATGAAGCACCATCCAAATACAAATGCCCCCTATGCCTTGCACCTTACTGCTCTCTGGTTTGTTTTAAGAAACACAAAG
AAGTGCCCTGTGCCATCAAGCCTGTGTCTGAAGAGGACCAATCAACTGCTCCCAATGGATCATTTGTAGATAGGCCAATATGTGTTGGAGACCAGAATGAAGTACTTGAA
AAGTCGCAGTTAGAGGCTATTGCTTCTTCCTCAGAAATACACAATATTTTGAATGATGAGAAACTCCGGAAGTTTATCCTTGCCATTGATAGCTCACTCGATCCAGAAAC
TGAACTTGATAAAGCTATGGAAGATGAAGCATTTCGCATTTTCAGTAGCAAGATATCATCCATCATCAGCTCTTAGACCTAATAGTCATAGATGGAGGAGGGAAAGAAAC
AGTTTACCAAGACATGTATATGTATAAACAACGAGACGTTTCTGCCCTTTTGGCATAAGGGATCAACTCAGCAGATGATGATGATTTCAGCAAAGAACGACGGCTTCATG
GATTGTAGTAATGCTGGGGGGCCATCTAAGTGATCAGCTGCTAATGTTTAATGGTGATCAAATGTACCAAGTTATACTGATCAGTTTTCAAGTACTATAGGAACATGTCC
GTTTGACGACCACCCAAACTCACGTTTAGTGATTTCTTGGCTGAAGAGAATGTTGCAAGTCATGTTTTGACTAAAGGACTTGCGATTGAATTAACCAACTGAAAGTTGAA
GGTTTTATGATTTTTATATCATAAAATTAGCATAGGTTTTATCATGATGAATCAGACTAAATTCCAACTGGGAAAAAAAAAGTGGTCTTTCATGATCAGGCTACCAACCA
ACCAACCAAATGGAAGGTTGAGAATTAAAGAATTTGGGAAATAGAATGTACTAAAGAATCAGTATTACTATTTACATTAAATGGAGAGGGGAA
Protein sequenceShow/hide protein sequence
MAPRECQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEEDQSTAPNGSFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLRKFILAIDSSLDPETE
LDKAMEDEAFRIFSSKISSIISS