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IVF0026258 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0026258
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr11:23716141..23716437
RNA-Seq ExpressionIVF0026258
SyntenyIVF0026258
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033502.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.08e-43100Show/hide
Query:  MTTTKFEIEKFDGNGDFTSWTRRITTIFGSQKTLKALEDPKELPATLTKSERETLEEVAYGTLVMNITDNMLRQ
        MTTTKFEIEKFDGNGDFTSWTRRITTIFGSQKTLKALEDPKELPATLTKSERETLEEVAYGTLVMNITDNMLRQ
Subjt:  MTTTKFEIEKFDGNGDFTSWTRRITTIFGSQKTLKALEDPKELPATLTKSERETLEEVAYGTLVMNITDNMLRQ

KAA0051442.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.68e-4689.47Show/hide
Query:  MTTTKFEIEKFDGNGDFTSWTRRITTIFGSQKTLKALEDPKELPATLTKSERETLEEVAYGTLVMNITDNMLRQVIEETTTFATLEKLKSLYEKK
        MTTTKFEIEKFDGNGDFT WT+RIT I GSQK LKALEDPKELPATLTKSERETLEEVAY TL+MNITDN+LRQVIEETT FAT EKLKSLYEKK
Subjt:  MTTTKFEIEKFDGNGDFTSWTRRITTIFGSQKTLKALEDPKELPATLTKSERETLEEVAYGTLVMNITDNMLRQVIEETTTFATLEKLKSLYEKK

KAA0054988.1 hypothetical protein E6C27_scaffold43052G001360 [Cucumis melo var. makuwa]1.47e-3685.37Show/hide
Query:  MTTTKFEIEKFDGNGDFTSWTRRITTIFGSQKTLKALEDPKELPATLTKSERETLEEVAYGTLVMNITDNMLRQVIEETTTF
        MTTTKFEIE FDGN DFTSWT+RIT I GSQK LKA EDPKELPATLTKSERETLEEVAY TL+MNITDN+LRQVIEET  F
Subjt:  MTTTKFEIEKFDGNGDFTSWTRRITTIFGSQKTLKALEDPKELPATLTKSERETLEEVAYGTLVMNITDNMLRQVIEETTTF

KAA0060284.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]3.20e-4385.26Show/hide
Query:  MTTTKFEIEKFDGNGDFTSWTRRITTIFGSQKTLKALEDPKELPATLTKSERETLEEVAYGTLVMNITDNMLRQVIEETTTFATLEKLKSLYEKK
        MTTTKFEIEKFDGNGDFT  T+RIT I GSQK LKALEDPKEL ATLTKSERETLEEVAYGTL+MNIT+N+LRQ+IEETT F T EKLKSLYEKK
Subjt:  MTTTKFEIEKFDGNGDFTSWTRRITTIFGSQKTLKALEDPKELPATLTKSERETLEEVAYGTLVMNITDNMLRQVIEETTTFATLEKLKSLYEKK

TYK27723.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.46e-4286.32Show/hide
Query:  MTTTKFEIEKFDGNGDFTSWTRRITTIFGSQKTLKALEDPKELPATLTKSERETLEEVAYGTLVMNITDNMLRQVIEETTTFATLEKLKSLYEKK
        MTTTKFEIEKFDGNGDFT  T+RIT   GSQK LKALEDPKELPATLTKSERETLEEVAY TL+MNITDN+LRQVIEETT FAT E LKSLYEKK
Subjt:  MTTTKFEIEKFDGNGDFTSWTRRITTIFGSQKTLKALEDPKELPATLTKSERETLEEVAYGTLVMNITDNMLRQVIEETTTFATLEKLKSLYEKK

TrEMBL top hitse value%identityAlignment
A0A5A7U6R2 Retrovirus-related Pol polyprotein from transposon TNT 1-944.6e-3889.47Show/hide
Query:  MTTTKFEIEKFDGNGDFTSWTRRITTIFGSQKTLKALEDPKELPATLTKSERETLEEVAYGTLVMNITDNMLRQVIEETTTFATLEKLKSLYEKK
        MTTTKFEIEKFDGNGDFT WT+RIT I GSQK LKALEDPKELPATLTKSERETLEEVAY TL+MNITDN+LRQVIEETT FAT EKLKSLYEKK
Subjt:  MTTTKFEIEKFDGNGDFTSWTRRITTIFGSQKTLKALEDPKELPATLTKSERETLEEVAYGTLVMNITDNMLRQVIEETTTFATLEKLKSLYEKK

A0A5A7UJ23 Integrase catalytic domain-containing protein1.8e-2975.79Show/hide
Query:  MTTTKFEIEKFDGNGDFTSWTRRITTIFGSQKTLKALEDPKELPATLTKSERETLEEVAYGTLVMNITDNMLRQVIEETTTFAT-LEKLKSLYEK
        MTTTKFEIE FDGN DFTSWT+RIT I GSQK LKA EDPKELPATLTKSERETLEEVAY TL+MNITDN+LRQVIEET  F    +KL + + +
Subjt:  MTTTKFEIEKFDGNGDFTSWTRRITTIFGSQKTLKALEDPKELPATLTKSERETLEEVAYGTLVMNITDNMLRQVIEETTTFAT-LEKLKSLYEK

A0A5A7UZ07 Retrotransposon protein, putative, Ty1-copia subclass4.8e-3585.26Show/hide
Query:  MTTTKFEIEKFDGNGDFTSWTRRITTIFGSQKTLKALEDPKELPATLTKSERETLEEVAYGTLVMNITDNMLRQVIEETTTFATLEKLKSLYEKK
        MTTTKFEIEKFDGNGDFT  T+RIT I GSQK LKALEDPKEL ATLTKSERETLEEVAYGTL+MNIT+N+LRQ+IEETT F T EKLKSLYEKK
Subjt:  MTTTKFEIEKFDGNGDFTSWTRRITTIFGSQKTLKALEDPKELPATLTKSERETLEEVAYGTLVMNITDNMLRQVIEETTTFATLEKLKSLYEKK

A0A5D3DST2 Retrovirus-related Pol polyprotein from transposon TNT 1-942.2e-32100Show/hide
Query:  MTTTKFEIEKFDGNGDFTSWTRRITTIFGSQKTLKALEDPKELPATLTKSERETLEEVAYGTLVMNITDNMLRQ
        MTTTKFEIEKFDGNGDFTSWTRRITTIFGSQKTLKALEDPKELPATLTKSERETLEEVAYGTLVMNITDNMLRQ
Subjt:  MTTTKFEIEKFDGNGDFTSWTRRITTIFGSQKTLKALEDPKELPATLTKSERETLEEVAYGTLVMNITDNMLRQ

A0A5D3DVM0 Retrovirus-related Pol polyprotein from transposon TNT 1-941.1e-3486.32Show/hide
Query:  MTTTKFEIEKFDGNGDFTSWTRRITTIFGSQKTLKALEDPKELPATLTKSERETLEEVAYGTLVMNITDNMLRQVIEETTTFATLEKLKSLYEKK
        MTTTKFEIEKFDGNGDFT  T+RIT   GSQK LKALEDPKELPATLTKSERETLEEVAY TL+MNITDN+LRQVIEETT FAT E LKSLYEKK
Subjt:  MTTTKFEIEKFDGNGDFTSWTRRITTIFGSQKTLKALEDPKELPATLTKSERETLEEVAYGTLVMNITDNMLRQVIEETTTFATLEKLKSLYEKK

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-944.5e-0628.42Show/hide
Query:  MTTTKFEIEKFDGNGDFTSWTRRITTIFGSQKTLKALEDPKELPATLTKSERETLEEVAYGTLVMNITDNMLRQVIEETTTFATLEKLKSLYEKK
        M+  K+E+ KF+G+  F++W RR+  +   Q   K L+   + P T+   +   L+E A   + ++++D+++  +I+E T      +L+SLY  K
Subjt:  MTTTKFEIEKFDGNGDFTSWTRRITTIFGSQKTLKALEDPKELPATLTKSERETLEEVAYGTLVMNITDNMLRQVIEETTTFATLEKLKSLYEKK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACTACGAAGTTTGAAATTGAAAAATTTGACGGGAATGGAGACTTTACCTCGTGGACAAGAAGAATTACTACAATTTTTGGTTCACAAAAGACCTTGAAAGCTTT
AGAAGACCCTAAAGAACTCCCTGCAACCTTGACCAAATCAGAAAGAGAAACATTGGAAGAGGTAGCTTACGGTACACTTGTTATGAATATTACTGATAATATGCTGAGAC
AGGTAATTGAAGAAACCACTACTTTTGCTACTTTGGAGAAATTGAAGTCACTGTATGAAAAGAAGATCTACAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGACTACTACGAAGTTTGAAATTGAAAAATTTGACGGGAATGGAGACTTTACCTCGTGGACAAGAAGAATTACTACAATTTTTGGTTCACAAAAGACCTTGAAAGCTTT
AGAAGACCCTAAAGAACTCCCTGCAACCTTGACCAAATCAGAAAGAGAAACATTGGAAGAGGTAGCTTACGGTACACTTGTTATGAATATTACTGATAATATGCTGAGAC
AGGTAATTGAAGAAACCACTACTTTTGCTACTTTGGAGAAATTGAAGTCACTGTATGAAAAGAAGATCTACAAATAA
Protein sequenceShow/hide protein sequence
MTTTKFEIEKFDGNGDFTSWTRRITTIFGSQKTLKALEDPKELPATLTKSERETLEEVAYGTLVMNITDNMLRQVIEETTTFATLEKLKSLYEKKIYK