CuGenDBv2

Gene ID	IVF0026275
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	E3 ubiquitin-protein ligase CHFR isoform X1
Genome location	chr08:21489154..21497361
RNA-Seq Expression	IVF0026275
Synteny	IVF0026275
Gene Ontology terms	GO:0006511 - ubiquitin-dependent protein catabolic process (biological process) GO:0016567 - protein ubiquitination (biological process) GO:0005634 - nucleus (cellular component) GO:0004842 - ubiquitin-protein transferase activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008442085.1 PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X1 [Cucumis melo]

3.73e-44

100

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Query:  PTDKMYVDIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGPVRD
        PTDKMYVDIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGPVRD
Subjt:  PTDKMYVDIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGPVRD

XP_008442086.1 PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X2 [Cucumis melo]

3.22e-44

100

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Query:  PTDKMYVDIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGPVRD
        PTDKMYVDIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGPVRD
Subjt:  PTDKMYVDIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGPVRD

XP_016899584.1 PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X3 [Cucumis melo]

1.39e-44

100

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Query:  PTDKMYVDIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGPVRD
        PTDKMYVDIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGPVRD
Subjt:  PTDKMYVDIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGPVRD

XP_031739668.1 E3 ubiquitin-protein ligase CHFR isoform X2 [Cucumis sativus]

1.98e-43

97.56

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Query:  PTDKMYVDIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGPVRD
        PTDKMY DIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRSSNAIIVDETLVQKDETTFI+CGSEIVSGPVRD
Subjt:  PTDKMYVDIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGPVRD

XP_031739669.1 E3 ubiquitin-protein ligase CHFR isoform X3 [Cucumis sativus]

2.47e-44

95.29

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Query:  PTDKMYVDIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGPVRDVQA
        PTDKMY DIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRSSNAIIVDETLVQKDETTFI+CGSEIVSGPVRDV +
Subjt:  PTDKMYVDIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGPVRDVQA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KYR0 RING-type domain-containing protein

5.5e-36

97.56

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Query:  PTDKMYVDIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGPVRD
        PTDKMY DIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRSSNAIIVDETLVQKDETTFI+CGSEIVSGPVRD
Subjt:  PTDKMYVDIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGPVRD

A0A1S3B4G1 E3 ubiquitin-protein ligase CHFR isoform X1

8.5e-37

100

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Query:  PTDKMYVDIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGPVRD
        PTDKMYVDIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGPVRD
Subjt:  PTDKMYVDIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGPVRD

A0A1S3B4V7 E3 ubiquitin-protein ligase CHFR isoform X2

8.5e-37

100

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Query:  PTDKMYVDIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGPVRD
        PTDKMYVDIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGPVRD
Subjt:  PTDKMYVDIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGPVRD

A0A1S4DUC8 E3 ubiquitin-protein ligase CHFR isoform X3

8.5e-37

100

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Query:  PTDKMYVDIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGPVRD
        PTDKMYVDIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGPVRD
Subjt:  PTDKMYVDIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGPVRD

A0A6J1HW48 E3 ubiquitin-protein ligase CHFR isoform X1

1.2e-27

73.63

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Query:  QAYSKRLSFPTDKMYVDIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGPVRD
        Q ++K +S   DK Y DIEINSDE VIFSETKS+SV+K+EWCKITRNSD+N+ TLQNRS NAI+VDETLVQKD+  FI+CGSEIVSGPV+D
Subjt:  QAYSKRLSFPTDKMYVDIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGPVRD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G47570.1 RING/U-box superfamily protein

7.4e-17

47.87

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Query:  SQPNISQAYSKRLSFPTDKMYVDIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGP
        S+P+   A++K +  P D  + DIEI  ++ VI SE K +S+EKHEWC+IT+N   ++AT+ N+SS+AI+VD+ +V KD    I  GSEIV GP
Subjt:  SQPNISQAYSKRLSFPTDKMYVDIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGP

AT1G47570.2 RING/U-box superfamily protein

6.3e-16

51.9

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Query:  PTDKMYVDIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGP
        P D  + DIEI  ++ VI SE K +S+EKHEWC+IT+N   ++AT+ N+SS+AI+VD+ +V KD    I  GSEIV GP
Subjt:  PTDKMYVDIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRSSNAIIVDETLVQKDETTFIRCGSEIVSGP

Sequences

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CDS sequence

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ATGTTATTGATTCATGCAACTCATCTTTGGAAGTTTTCGTTGCAGAAACTATGGCTGCCTAATATTTCTCAAGCCTATTCTCAGCCTAATATTTCTCAAGCCTATTCTAA
GAGATTATCTTTTCCAACTGATAAAATGTATGTGGATATTGAGATAAACTCTGATGAGACGGTTATCTTCTCGGAGACAAAATCCACATCTGTTGAAAAACATGAATGGT
GCAAAATCACAAGGAATTCTGATTTAAATACTGCCACTCTGCAGAATAGAAGTTCAAATGCTATCATTGTCGATGAGACTCTTGTTCAAAAGGATGAAACTACTTTCATC
AGGTGTGGAAGCGAAATTGTTTCGGGTCCAGTTCGGGATGTGCAAGCAAGGAAGTTTAGGCCTGACTTTTTGCTTCTTTCGTCTTCTCTGGCACAGATGAGGGTTCTTGA
AGGTGTTCCAGAATTGCAAATGATTTCTTGCTATGTGAAGATGTGCAAAGTTGATTTCGGGACATTTAAAATCGAGGGTAAAAAAGAGAGGTTTGAACCTTCATCTTGCA
AGGCCTCTCTAATTCTTAATAAGTCAATAGAATTTTTAAAATCACTAACCATAATAGTACCAACGGTAAGAAAGGGAGGCTTCAAACATTCGAAATAA

mRNA sequence

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Protein sequence

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MLLIHATHLWKFSLQKLWLPNISQAYSQPNISQAYSKRLSFPTDKMYVDIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRSSNAIIVDETLVQKDETTFI
RCGSEIVSGPVRDVQARKFRPDFLLLSSSLAQMRVLEGVPELQMISCYVKMCKVDFGTFKIEGKKERFEPSSCKASLILNKSIEFLKSLTIIVPTVRKGGFKHSK

IVF0026275 (gene) of Melon (IVF77) v1 genome