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IVF0026282 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0026282
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description60S ribosomal export protein NMD3
Genome locationchr04:4596852..4597022
RNA-Seq ExpressionIVF0026282
SyntenyIVF0026282
Gene Ontology termsGO:0000055 - ribosomal large subunit export from nucleus (biological process)
GO:0015031 - protein transport (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0043023 - ribosomal large subunit binding (molecular function)
InterPro domainsIPR007064 - Nmd3, N-terminal
IPR039768 - Ribosomal export protein Nmd3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143504.1 60S ribosomal export protein NMD3 [Cucumis sativus]1.12e-2386.27Show/hide
Query:  MAPNATNMCVKCLCSEVDNTEGLQKQLTIMHCPNCESYLQPPRTWVEANVE
        MAPNA NMCVKCLCSEVD TEGLQKQLTIMHCP+CESYLQPPRTW++A +E
Subjt:  MAPNATNMCVKCLCSEVDNTEGLQKQLTIMHCPNCESYLQPPRTWVEANVE

XP_022149109.1 60S ribosomal export protein NMD3 [Momordica charantia]1.12e-2386.27Show/hide
Query:  MAPNATNMCVKCLCSEVDNTEGLQKQLTIMHCPNCESYLQPPRTWVEANVE
        MAPNA NMCVKCLCSEVD TEGLQKQLTIMHCP+CESYLQPPRTW++A +E
Subjt:  MAPNATNMCVKCLCSEVDNTEGLQKQLTIMHCPNCESYLQPPRTWVEANVE

XP_022938070.1 60S ribosomal export protein NMD3-like [Cucurbita moschata]1.13e-2386.27Show/hide
Query:  MAPNATNMCVKCLCSEVDNTEGLQKQLTIMHCPNCESYLQPPRTWVEANVE
        MAPNA NMCVKCLCSEVD TEGLQKQLTIMHCP+CESYLQPPRTW++A +E
Subjt:  MAPNATNMCVKCLCSEVDNTEGLQKQLTIMHCPNCESYLQPPRTWVEANVE

XP_022965515.1 60S ribosomal export protein NMD3-like [Cucurbita maxima]5.97e-2486.27Show/hide
Query:  MAPNATNMCVKCLCSEVDNTEGLQKQLTIMHCPNCESYLQPPRTWVEANVE
        MAPNA NMCVKCLCSEVD TEGLQKQLTIMHCP+CESYLQPPRTW++A +E
Subjt:  MAPNATNMCVKCLCSEVDNTEGLQKQLTIMHCPNCESYLQPPRTWVEANVE

XP_038883908.1 60S ribosomal export protein NMD3 isoform X2 [Benincasa hispida]1.12e-2386.27Show/hide
Query:  MAPNATNMCVKCLCSEVDNTEGLQKQLTIMHCPNCESYLQPPRTWVEANVE
        MAPNA NMCVKCLCSEVD TEGLQKQLTIMHCP+CESYLQPPRTW++A +E
Subjt:  MAPNATNMCVKCLCSEVDNTEGLQKQLTIMHCPNCESYLQPPRTWVEANVE

TrEMBL top hitse value%identityAlignment
A0A0A0KGY6 60S ribosomal export protein NMD33.6e-1986.27Show/hide
Query:  MAPNATNMCVKCLCSEVDNTEGLQKQLTIMHCPNCESYLQPPRTWVEANVE
        MAPNA NMCVKCLCSEVD TEGLQKQLTIMHCP+CESYLQPPRTW++A +E
Subjt:  MAPNATNMCVKCLCSEVDNTEGLQKQLTIMHCPNCESYLQPPRTWVEANVE

A0A6J1D613 60S ribosomal export protein NMD33.6e-1986.27Show/hide
Query:  MAPNATNMCVKCLCSEVDNTEGLQKQLTIMHCPNCESYLQPPRTWVEANVE
        MAPNA NMCVKCLCSEVD TEGLQKQLTIMHCP+CESYLQPPRTW++A +E
Subjt:  MAPNATNMCVKCLCSEVDNTEGLQKQLTIMHCPNCESYLQPPRTWVEANVE

A0A6J1FIM4 60S ribosomal export protein NMD33.6e-1986.27Show/hide
Query:  MAPNATNMCVKCLCSEVDNTEGLQKQLTIMHCPNCESYLQPPRTWVEANVE
        MAPNA NMCVKCLCSEVD TEGLQKQLTIMHCP+CESYLQPPRTW++A +E
Subjt:  MAPNATNMCVKCLCSEVDNTEGLQKQLTIMHCPNCESYLQPPRTWVEANVE

A0A6J1HNX8 60S ribosomal export protein NMD32.1e-1986.27Show/hide
Query:  MAPNATNMCVKCLCSEVDNTEGLQKQLTIMHCPNCESYLQPPRTWVEANVE
        MAPNA NMCVKCLCSEVD TEGLQKQLTIMHCP+CESYLQPPRTW++A +E
Subjt:  MAPNATNMCVKCLCSEVDNTEGLQKQLTIMHCPNCESYLQPPRTWVEANVE

A0A6J1IT79 60S ribosomal export protein NMD36.1e-1986.27Show/hide
Query:  MAPNATNMCVKCLCSEVDNTEGLQKQLTIMHCPNCESYLQPPRTWVEANVE
        MAPNA NMCVKCLCSEVD TEGLQKQLTIMHCP+CESYLQPPRTW++A +E
Subjt:  MAPNATNMCVKCLCSEVDNTEGLQKQLTIMHCPNCESYLQPPRTWVEANVE

SwissProt top hitse value%identityAlignment
Q08DS5 60S ribosomal export protein NMD32.5e-0947.06Show/hide
Query:  MAPNATNMCVKCLCSEVDNTEGLQKQLTIMHCPNCESYLQPPRTWVEANVE
        ++PN  N+CV CL S+VD ++G+ KQ++I  C  C+ Y QPP TWV+  +E
Subjt:  MAPNATNMCVKCLCSEVDNTEGLQKQLTIMHCPNCESYLQPPRTWVEANVE

Q55BF2 60S ribosomal export protein NMD32.5e-0956.25Show/hide
Query:  NATNMCVKCLCSEVDNTEGLQKQLTIMHCPNCESYLQPPRTWVEANVE
        N +NMCV C+ S+VD TEG+ KQLTI  C  C  YLQPP  W  A +E
Subjt:  NATNMCVKCLCSEVDNTEGLQKQLTIMHCPNCESYLQPPRTWVEANVE

Q5BLF0 60S ribosomal export protein NMD32.2e-1055.1Show/hide
Query:  PNATNMCVKCLCSEVDNTEGLQKQLTIMHCPNCESYLQPPRTWVEANVE
        PN  NMCV CL ++VD +EG+ KQ+TI  C  CE YLQPP +WV+  +E
Subjt:  PNATNMCVKCLCSEVDNTEGLQKQLTIMHCPNCESYLQPPRTWVEANVE

Q6GNS3 60S ribosomal export protein NMD33.8e-1051.02Show/hide
Query:  PNATNMCVKCLCSEVDNTEGLQKQLTIMHCPNCESYLQPPRTWVEANVE
        PN  NMCV CL ++VD +EG+ KQ+++  C  CE YLQPP TW++  +E
Subjt:  PNATNMCVKCLCSEVDNTEGLQKQLTIMHCPNCESYLQPPRTWVEANVE

Q6P2Z6 60S ribosomal export protein NMD35.0e-1051.02Show/hide
Query:  PNATNMCVKCLCSEVDNTEGLQKQLTIMHCPNCESYLQPPRTWVEANVE
        PN  NMCV CL  +VD +EG+ KQ+++  C  CE YLQPP TW++  +E
Subjt:  PNATNMCVKCLCSEVDNTEGLQKQLTIMHCPNCESYLQPPRTWVEANVE

Arabidopsis top hitse value%identityAlignment
AT2G03820.1 nonsense-mediated mRNA decay NMD3 family protein1.8e-1564.71Show/hide
Query:  MAPNATNMCVKCLCSEVDNTEGLQKQLTIMHCPNCESYLQPPRTWVEANVE
        MAPNA NMCV CL SEVD TEGLQK + I +CP C  YLQPP+TW++   E
Subjt:  MAPNATNMCVKCLCSEVDNTEGLQKQLTIMHCPNCESYLQPPRTWVEANVE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACCAAATGCTACCAATATGTGTGTCAAGTGCTTGTGTTCTGAAGTTGACAACACGGAAGGTTTACAGAAGCAACTGACTATCATGCATTGTCCGAATTGCGAGAG
TTACTTGCAACCACCCCGAACTTGGGTTGAAGCAAACGTAGAAAGGTTTCACGAAAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCACCAAATGCTACCAATATGTGTGTCAAGTGCTTGTGTTCTGAAGTTGACAACACGGAAGGTTTACAGAAGCAACTGACTATCATGCATTGTCCGAATTGCGAGAG
TTACTTGCAACCACCCCGAACTTGGGTTGAAGCAAACGTAGAAAGGTTTCACGAAAAATAG
Protein sequenceShow/hide protein sequence
MAPNATNMCVKCLCSEVDNTEGLQKQLTIMHCPNCESYLQPPRTWVEANVERFHEK