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IVF0026337 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0026337
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr12:4447719..4461708
RNA-Seq ExpressionIVF0026337
SyntenyIVF0026337
Gene Ontology termsGO:0006388 - tRNA splicing, via endonucleolytic cleavage and ligation (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003972 - RNA ligase (ATP) activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047411.1 gag/pol protein [Cucumis melo var. makuwa]5.41e-2555.36Show/hide
Query:  ALLTSGGRSSGKIQPRMPQTQFFYLGVKSRPLMITLFC----IGHKCFELRGHTSRTSVYISCITPHTFSQSIGQEASKLEGELRCNAERSKRWPILYQR
        +L TS  R   K++ RMP TQFF+ GVK+ P  ++LFC    IG   F    HT RTSVYI  I PH F QSI ++AS LEGELRC+ +RSKRWP+L+QR
Subjt:  ALLTSGGRSSGKIQPRMPQTQFFYLGVKSRPLMITLFC----IGHKCFELRGHTSRTSVYISCITPHTFSQSIGQEASKLEGELRCNAERSKRWPILYQR

Query:  VANARLMSEITK
        V NA L+SE T+
Subjt:  VANARLMSEITK

KAA0047414.1 gag/pol protein [Cucumis melo var. makuwa]2.80e-1745.45Show/hide
Query:  ALLTSGGRSSGKIQPRMPQTQFFYLGVKSRPLMITL--FCIGHKCFELRG----------HTSRTSVYISCITPHTFSQSIGQEASKLEGELRCNAERSK
        +LL    RS+ +   R P    F L  K+RP+  T      G K  +L+           HT RTSVYI  I PH F QSIG+EAS LE +LRCN E+SK
Subjt:  ALLTSGGRSSGKIQPRMPQTQFFYLGVKSRPLMITL--FCIGHKCFELRG----------HTSRTSVYISCITPHTFSQSIGQEASKLEGELRCNAERSK

Query:  RWPILYQRVANARLMSEITKN
        +WP+L+QRVAN R +S  T+N
Subjt:  RWPILYQRVANARLMSEITKN

KAA0051943.1 hypothetical protein E6C27_scaffold60G004060 [Cucumis melo var. makuwa]5.32e-1665.57Show/hide
Query:  HTSRTSVYISCITPHTFSQSIGQEASKLEGELRCNAERSKRWPILYQRVANARLMSEITKN
        HT RTSVYI  I P TFSQSIG +AS LE EL+CN +RSKRWP+ +QRV NAR++ E T+N
Subjt:  HTSRTSVYISCITPHTFSQSIGQEASKLEGELRCNAERSKRWPILYQRVANARLMSEITKN

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]4.02e-1756.98Show/hide
Query:  MPQTQFFYLGVKSRPLMITLFC----IGHKCFELRGHTSRTSVYISCITPHTFSQSIGQEASKLEGELRCNAERSKRWPILYQRVA
        MPQTQFF+ G+KS    ++LFC    I    FE   H  R+S YI  I PH FSQSI QE S L GELRCN ER KRW +L+QRVA
Subjt:  MPQTQFFYLGVKSRPLMITLFC----IGHKCFELRGHTSRTSVYISCITPHTFSQSIGQEASKLEGELRCNAERSKRWPILYQRVA

KAA0065520.1 retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo var. makuwa]3.72e-2658Show/hide
Query:  KIQPRMPQTQFFYLGVKSRPLMITLFCIGH--KCFELRGHTSRTSVYISCITPHTFSQSIGQEASKLEGELRCNAERSKRWPILYQRVANARLMSEITKN
        K++ RMP TQFFYLGVK+ P M++ FC+         R HT RTSVYI  I  H+FSQSIG+EAS  +GE RCN +RSK WPIL+QRVANAR +S + K+
Subjt:  KIQPRMPQTQFFYLGVKSRPLMITLFCIGH--KCFELRGHTSRTSVYISCITPHTFSQSIGQEASKLEGELRCNAERSKRWPILYQRVANARLMSEITKN

TrEMBL top hitse value%identityAlignment
A0A5A7U7P6 Uncharacterized protein2.0e-1365.57Show/hide
Query:  HTSRTSVYISCITPHTFSQSIGQEASKLEGELRCNAERSKRWPILYQRVANARLMSEITKN
        HT RTSVYI  I P TFSQSIG +AS LE EL+CN +RSKRWP+ +QRV NAR++ E T+N
Subjt:  HTSRTSVYISCITPHTFSQSIGQEASKLEGELRCNAERSKRWPILYQRVANARLMSEITKN

A0A5A7VEB1 Retrotransposon protein, putative, Ty3-gypsy subclass, expressed2.4e-2258Show/hide
Query:  KIQPRMPQTQFFYLGVKSRPLMITLFCI--GHKCFELRGHTSRTSVYISCITPHTFSQSIGQEASKLEGELRCNAERSKRWPILYQRVANARLMSEITKN
        K++ RMP TQFFYLGVK+ P M++ FC+         R HT RTSVYI  I  H+FSQSIG+EAS  +GE RCN +RSK WPIL+QRVANAR +S + K+
Subjt:  KIQPRMPQTQFFYLGVKSRPLMITLFCI--GHKCFELRGHTSRTSVYISCITPHTFSQSIGQEASKLEGELRCNAERSKRWPILYQRVANARLMSEITKN

A0A5A7VGQ5 Uncharacterized protein2.4e-1456.98Show/hide
Query:  MPQTQFFYLGVKSRPLMITLFC----IGHKCFELRGHTSRTSVYISCITPHTFSQSIGQEASKLEGELRCNAERSKRWPILYQRVA
        MPQTQFF+ G+KS    ++LFC    I    FE   H  R+S YI  I PH FSQSI QE S L GELRCN ER KRW +L+QRVA
Subjt:  MPQTQFFYLGVKSRPLMITLFC----IGHKCFELRGHTSRTSVYISCITPHTFSQSIGQEASKLEGELRCNAERSKRWPILYQRVA

A0A5D3CUK8 Gag/pol protein3.5e-2155.36Show/hide
Query:  ALLTSGGRSSGKIQPRMPQTQFFYLGVKSRPLMITLFC----IGHKCFELRGHTSRTSVYISCITPHTFSQSIGQEASKLEGELRCNAERSKRWPILYQR
        +L TS  R   K++ RMP TQFF+ GVK+ P  ++LFC    IG   F    HT RTSVYI  I PH F QSI ++AS LEGELRC+ +RSKRWP+L+QR
Subjt:  ALLTSGGRSSGKIQPRMPQTQFFYLGVKSRPLMITLFC----IGHKCFELRGHTSRTSVYISCITPHTFSQSIGQEASKLEGELRCNAERSKRWPILYQR

Query:  VANARLMSEITK
        V NA L+SE T+
Subjt:  VANARLMSEITK

A0A5D3CV18 Gag/pol protein1.4e-1443.8Show/hide
Query:  ALLTSGGRSSGKIQPRMPQTQFFYLGVKSRPLMITLFCIGH------------KCFELRGHTSRTSVYISCITPHTFSQSIGQEASKLEGELRCNAERSK
        +LL    RS+ +   R P    F L  K+RP+  T     H                 + HT RTSVYI  I PH F QSIG+EAS LE +LRCN E+SK
Subjt:  ALLTSGGRSSGKIQPRMPQTQFFYLGVKSRPLMITLFCIGH------------KCFELRGHTSRTSVYISCITPHTFSQSIGQEASKLEGELRCNAERSK

Query:  RWPILYQRVANARLMSEITKN
        +WP+L+QRVAN R +S  T+N
Subjt:  RWPILYQRVANARLMSEITKN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAATGCTCTTCTAACGAGTGGCGGACGCTCGTCCGGTAAAATACAACCAAGAATGCCCCAGACTCAGTTTTTCTATCTCGGGGTAAAAAGCAGACCCTTAATGAT
TACTTTGTTTTGTATTGGTCATAAGTGTTTCGAGCTTCGGGGTCATACTTCGAGGACTTCAGTCTACATTTCTTGCATCACCCCTCACACATTTTCCCAAAGTATAGGTC
AGGAAGCGAGCAAGTTGGAGGGAGAACTAAGGTGCAACGCGGAACGATCGAAAAGATGGCCAATCCTCTACCAACGAGTGGCGAACGCTCGTTTGATGTCAGAAATCACA
AAAAATGTACTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCAATGCTCTTCTAACGAGTGGCGGACGCTCGTCCGGTAAAATACAACCAAGAATGCCCCAGACTCAGTTTTTCTATCTCGGGGTAAAAAGCAGACCCTTAATGAT
TACTTTGTTTTGTATTGGTCATAAGTGTTTCGAGCTTCGGGGTCATACTTCGAGGACTTCAGTCTACATTTCTTGCATCACCCCTCACACATTTTCCCAAAGTATAGGTC
AGGAAGCGAGCAAGTTGGAGGGAGAACTAAGGTGCAACGCGGAACGATCGAAAAGATGGCCAATCCTCTACCAACGAGTGGCGAACGCTCGTTTGATGTCAGAAATCACA
AAAAATGTACTTTAG
Protein sequenceShow/hide protein sequence
MANALLTSGGRSSGKIQPRMPQTQFFYLGVKSRPLMITLFCIGHKCFELRGHTSRTSVYISCITPHTFSQSIGQEASKLEGELRCNAERSKRWPILYQRVANARLMSEIT
KNVL