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IVF0026409 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0026409
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr04:21886397..21886798
RNA-Seq ExpressionIVF0026409
SyntenyIVF0026409
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0005840 - ribosome (cellular component)
GO:0016020 - membrane (cellular component)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061317.1 hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa]4.51e-3573.91Show/hide
Query:  MPRTQFSCLGAKSGTSTISSLCFVLVISLSIFEARTPRSSTHTPGMLPNTFSQGIGREASSLEGELWCDPKRYKRWPMLPTSGERSSGVRNH
        MPRTQFS   AK           VLVISLSIFEART R+STHT GMLP+ F+QGIGREASSLEGELW DPKR+KRWPML TSGER SGVRNH
Subjt:  MPRTQFSCLGAKSGTSTISSLCFVLVISLSIFEARTPRSSTHTPGMLPNTFSQGIGREASSLEGELWCDPKRYKRWPMLPTSGERSSGVRNH

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]4.77e-6077.44Show/hide
Query:  MLPKSGERSSGVRNHWKCTSSKRNGLSSRTSSVHPKKTQTRMPRTQFSCLGAKSGTSTISSLCFVLVISLSIFEARTPRSSTHTPGMLPNTFSQGIGREA
        M P +GERSSGVRNHWKCT S+ NGL+SRTS   PKKT+ RMPR+QFS  GAKS T T+SSLCFVLVI+LSIFEARTPR+STHT GMLP+ FS+GIG+EA
Subjt:  MLPKSGERSSGVRNHWKCTSSKRNGLSSRTSSVHPKKTQTRMPRTQFSCLGAKSGTSTISSLCFVLVISLSIFEARTPRSSTHTPGMLPNTFSQGIGREA

Query:  SSLEGELWCDPKRYKRWPMLPTSGERSSGVRNH
        SSLEGELWC+PKR KRW MLPTS ERSSG+RNH
Subjt:  SSLEGELWCDPKRYKRWPMLPTSGERSSGVRNH

TYK15439.1 uncharacterized protein E5676_scaffold477G00010 [Cucumis melo var. makuwa]2.53e-3576.54Show/hide
Query:  KSGTSTISSLCFVLVISLSIFEARTPRSSTHTPGMLPNTFSQGIGREASSLEGELWCDPKRYKRWPMLPTSGERSSGVRNH
        KSG  T+SS+C VLVI LSIF A  PR+STHTPGMLP+ FS GI REA SLEGELWCDPKR +RWPMLPTSG+RSS VRNH
Subjt:  KSGTSTISSLCFVLVISLSIFEARTPRSSTHTPGMLPNTFSQGIGREASSLEGELWCDPKRYKRWPMLPTSGERSSGVRNH

TYK22521.1 uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]5.44e-4854.01Show/hide
Query:  MLPKSGERSSGVRNHWKCTSSKRNGLSSRTSSVHPKKTQTRMPRTQFSCLGAKSGTSTISSLCFVLVISLSIFEARTPRSSTHTPGMLPNTFSQ------
        MLP SGERSSGVRN WKCT  + NGLSSRTS   PKKT+ RMP+TQFS  G KS   T+S+LC VLV SLSIF A TPR+STHTPGMLP+TFS+      
Subjt:  MLPKSGERSSGVRNHWKCTSSKRNGLSSRTSSVHPKKTQTRMPRTQFSCLGAKSGTSTISSLCFVLVISLSIFEARTPRSSTHTPGMLPNTFSQ------

Query:  ------------------------------------------------GIGREASSLEGELWCDPKRYKRWPMLPTSGERSSGVRNH
                                                        GIGREASSLEGEL CDPK  KRWPMLPT GERSSG RNH
Subjt:  ------------------------------------------------GIGREASSLEGELWCDPKRYKRWPMLPTSGERSSGVRNH

TYK23424.1 gag/pol protein [Cucumis melo var. makuwa]7.09e-4366.17Show/hide
Query:  MLPKSGERSSGVRNHWKCTSSKRNGLSSRTSSVHPKKTQTRMPRTQFSCLGAKSGTSTISSLCFVLVISLSIFEARTPRSSTHTPGMLPNTFSQGIGREA
        MLP SGERSSGVRNHWKCT S+ N LSSRT    PKKT  R P+ QFS  G KSG  T+SSL  + +I L +F A  P +STHTP ML +T S GIGREA
Subjt:  MLPKSGERSSGVRNHWKCTSSKRNGLSSRTSSVHPKKTQTRMPRTQFSCLGAKSGTSTISSLCFVLVISLSIFEARTPRSSTHTPGMLPNTFSQGIGREA

Query:  SSLEGELWCDPKRYKRWPMLPTSGERSSGVRNH
        SSLE ELWCDPKR K W ML TSG RSS VRNH
Subjt:  SSLEGELWCDPKRYKRWPMLPTSGERSSGVRNH

TrEMBL top hitse value%identityAlignment
A0A5A7V368 Uncharacterized protein2.9e-2773.91Show/hide
Query:  MPRTQFSCLGAKSGTSTISSLCFVLVISLSIFEARTPRSSTHTPGMLPNTFSQGIGREASSLEGELWCDPKRYKRWPMLPTSGERSSGVRNH
        MPRTQFS   AK           VLVISLSIFEART R+STHT GMLP+ F+QGIGREASSLEGELW DPKR+KRWPML TSGER SGVRNH
Subjt:  MPRTQFSCLGAKSGTSTISSLCFVLVISLSIFEARTPRSSTHTPGMLPNTFSQGIGREASSLEGELWCDPKRYKRWPMLPTSGERSSGVRNH

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein2.9e-5177.44Show/hide
Query:  MLPKSGERSSGVRNHWKCTSSKRNGLSSRTSSVHPKKTQTRMPRTQFSCLGAKSGTSTISSLCFVLVISLSIFEARTPRSSTHTPGMLPNTFSQGIGREA
        M P +GERSSGVRNHWKCT S+ NGL+SRTS   PKKT+ RMPR+QFS  GAKS T T+SSLCFVLVI+LSIFEARTPR+STHT GMLP+ FS+GIG+EA
Subjt:  MLPKSGERSSGVRNHWKCTSSKRNGLSSRTSSVHPKKTQTRMPRTQFSCLGAKSGTSTISSLCFVLVISLSIFEARTPRSSTHTPGMLPNTFSQGIGREA

Query:  SSLEGELWCDPKRYKRWPMLPTSGERSSGVRNH
        SSLEGELWC+PKR KRW MLPTS ERSSG+RNH
Subjt:  SSLEGELWCDPKRYKRWPMLPTSGERSSGVRNH

A0A5D3CQ36 Putative nuclease HARBI13.8e-2772.63Show/hide
Query:  MLPKSGERSSGVRNHWKCTSSKRNGLSSRTSSVHPKKTQTRMPRTQFSCLGAKSGTSTISSLCFVLVISLSIFEARTPRSSTHTPGMLPNTFSQG
        MLP SGER   VRNHWKC  S+ NGLSSRTS   PKKT+ RMP TQFS  G KS   T+SSLCFVL ISLSIFEA T R+STHTPGMLP+TFSQG
Subjt:  MLPKSGERSSGVRNHWKCTSSKRNGLSSRTSSVHPKKTQTRMPRTQFSCLGAKSGTSTISSLCFVLVISLSIFEARTPRSSTHTPGMLPNTFSQG

A0A5D3DFP2 Uncharacterized protein3.9e-4054.01Show/hide
Query:  MLPKSGERSSGVRNHWKCTSSKRNGLSSRTSSVHPKKTQTRMPRTQFSCLGAKSGTSTISSLCFVLVISLSIFEARTPRSSTHTPGMLPNTFSQ------
        MLP SGERSSGVRN WKCT  + NGLSSRTS   PKKT+ RMP+TQFS  G KS   T+S+LC VLV SLSIF A TPR+STHTPGMLP+TFS+      
Subjt:  MLPKSGERSSGVRNHWKCTSSKRNGLSSRTSSVHPKKTQTRMPRTQFSCLGAKSGTSTISSLCFVLVISLSIFEARTPRSSTHTPGMLPNTFSQ------

Query:  ------------------------------------------------GIGREASSLEGELWCDPKRYKRWPMLPTSGERSSGVRNH
                                                        GIGREASSLEGEL CDPK  KRWPMLPT GERSSG RNH
Subjt:  ------------------------------------------------GIGREASSLEGELWCDPKRYKRWPMLPTSGERSSGVRNH

A0A5D3DIF8 Gag/pol protein2.6e-3666.17Show/hide
Query:  MLPKSGERSSGVRNHWKCTSSKRNGLSSRTSSVHPKKTQTRMPRTQFSCLGAKSGTSTISSLCFVLVISLSIFEARTPRSSTHTPGMLPNTFSQGIGREA
        MLP SGERSSGVRNHWKCT S+ N LSSRT    PKKT  R P+ QFS  G KSG  T+SSL  + +I L +F A  P +STHTP ML +T S GIGREA
Subjt:  MLPKSGERSSGVRNHWKCTSSKRNGLSSRTSSVHPKKTQTRMPRTQFSCLGAKSGTSTISSLCFVLVISLSIFEARTPRSSTHTPGMLPNTFSQGIGREA

Query:  SSLEGELWCDPKRYKRWPMLPTSGERSSGVRNH
        SSLE ELWCDPKR K W ML TSG RSS VRNH
Subjt:  SSLEGELWCDPKRYKRWPMLPTSGERSSGVRNH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCCAAAGAGTGGCGAACGCTCGTCTGGTGTCAGAAACCACTGGAAATGCACTAGCAGCAAAAGAAACGGGTTGAGCTCGAGGACTTCTAGTGTTCATCCCAAGAA
AACGCAAACGAGAATGCCCCGAACTCAGTTTTCTTGTCTTGGTGCCAAAAGCGGTACTTCGACGATTTCTTCCCTTTGCTTTGTATTAGTCATAAGTCTCTCCATCTTTG
AGGCTCGTACTCCGAGGAGTTCAACCCACACTCCTGGCATGCTCCCTAACACATTTTCCCAAGGTATAGGTCGGGAAGCGAGCTCGTTGGAGGGAGAATTGTGGTGCGAT
CCAAAACGATACAAAAGATGGCCAATGCTTCCAACGAGTGGCGAACGCTCGTCCGGTGTCAGAAACCACTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTCCAAAGAGTGGCGAACGCTCGTCTGGTGTCAGAAACCACTGGAAATGCACTAGCAGCAAAAGAAACGGGTTGAGCTCGAGGACTTCTAGTGTTCATCCCAAGAA
AACGCAAACGAGAATGCCCCGAACTCAGTTTTCTTGTCTTGGTGCCAAAAGCGGTACTTCGACGATTTCTTCCCTTTGCTTTGTATTAGTCATAAGTCTCTCCATCTTTG
AGGCTCGTACTCCGAGGAGTTCAACCCACACTCCTGGCATGCTCCCTAACACATTTTCCCAAGGTATAGGTCGGGAAGCGAGCTCGTTGGAGGGAGAATTGTGGTGCGAT
CCAAAACGATACAAAAGATGGCCAATGCTTCCAACGAGTGGCGAACGCTCGTCCGGTGTCAGAAACCACTGA
Protein sequenceShow/hide protein sequence
MLPKSGERSSGVRNHWKCTSSKRNGLSSRTSSVHPKKTQTRMPRTQFSCLGAKSGTSTISSLCFVLVISLSIFEARTPRSSTHTPGMLPNTFSQGIGREASSLEGELWCD
PKRYKRWPMLPTSGERSSGVRNH