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IVF0026440 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0026440
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionSWR1 complex subunit 6
Genome locationchr11:24250073..24256619
RNA-Seq ExpressionIVF0026440
SyntenyIVF0026440
Gene Ontology termsGO:0043486 - histone exchange (biological process)
GO:0050793 - regulation of developmental process (biological process)
GO:0000812 - Swr1 complex (cellular component)
GO:0031491 - nucleosome binding (molecular function)
InterPro domainsIPR039723 - Vps71/ZNHIT1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143171.1 SWR1 complex subunit 6 [Cucumis sativus]1.57e-7878.95Show/hide
Query:  MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDEDASLDDDDQA----------------KALEAKKAPKTFME
        MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAG+EVVENIDDEDASLDDDDQA                KALEAKKAPKTFME
Subjt:  MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDEDASLDDDDQA----------------KALEAKKAPKTFME

Query:  LLHEVFIAS---HVPSYFKAAVGPPSSTSRR-----------YTCIRCGIRFCSSRCQNIHNDTRCLKFVA
        LLHE  + S   HVPSY KAAVGPPSSTSRR           YTCIRCGIRFCSSRCQNIHNDTRCLKFVA
Subjt:  LLHEVFIAS---HVPSYFKAAVGPPSSTSRR-----------YTCIRCGIRFCSSRCQNIHNDTRCLKFVA

XP_008463835.1 PREDICTED: SWR1 complex subunit 6 [Cucumis melo]4.71e-8080.12Show/hide
Query:  MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDEDASLDDDDQA----------------KALEAKKAPKTFME
        MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDEDASLDDDDQA                KALEAKKAPKTFME
Subjt:  MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDEDASLDDDDQA----------------KALEAKKAPKTFME

Query:  LLHEVFIAS---HVPSYFKAAVGPPSSTSRR-----------YTCIRCGIRFCSSRCQNIHNDTRCLKFVA
        LLHE  + S   HVPSYFKAAVGPPSSTSRR           YTCIRCGIRFCSSRCQNIHNDTRCLKFVA
Subjt:  LLHEVFIAS---HVPSYFKAAVGPPSSTSRR-----------YTCIRCGIRFCSSRCQNIHNDTRCLKFVA

XP_022943643.1 SWR1 complex subunit 6 [Cucurbita moschata]2.99e-7473.84Show/hide
Query:  MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDEDASLDDDDQA-----------------KALEAKKAPKTFM
        MDDD+TN FRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+E++ENIDDEDASLDDD+QA                 KALEAKKAPKTFM
Subjt:  MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDEDASLDDDDQA-----------------KALEAKKAPKTFM

Query:  ELLHEVFIAS---HVPSYFKAAVGPPSSTSRR-----------YTCIRCGIRFCSSRCQNIHNDTRCLKFVA
        ELLHE  + S   HVPSY KAAVGPPSSTSRR           YTCIRCG+RFCS RCQNIHNDTRCLKFVA
Subjt:  ELLHEVFIAS---HVPSYFKAAVGPPSSTSRR-----------YTCIRCGIRFCSSRCQNIHNDTRCLKFVA

XP_022986949.1 SWR1 complex subunit 6 [Cucurbita maxima]2.99e-7473.84Show/hide
Query:  MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDEDASLDDDDQA-----------------KALEAKKAPKTFM
        MDDD+TN FRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+E++ENIDDEDASLDDD+QA                 KALEAKKAPKTFM
Subjt:  MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDEDASLDDDDQA-----------------KALEAKKAPKTFM

Query:  ELLHEVFIAS---HVPSYFKAAVGPPSSTSRR-----------YTCIRCGIRFCSSRCQNIHNDTRCLKFVA
        ELLHE  + S   HVPSY KAAVGPPSSTSRR           YTCIRCG+RFCS RCQNIHNDTRCLKFVA
Subjt:  ELLHEVFIAS---HVPSYFKAAVGPPSSTSRR-----------YTCIRCGIRFCSSRCQNIHNDTRCLKFVA

XP_038901863.1 SWR1 complex subunit 6 [Benincasa hispida]3.65e-7575.58Show/hide
Query:  MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDEDASLDDDDQA-----------------KALEAKKAPKTFM
        MDDD+TNPFRRMSSR RKVAPKMVAALASSDNRTQAALARLEALENDNAG+E VENIDDEDASLDDD+QA                 KALEAKKAPKTFM
Subjt:  MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDEDASLDDDDQA-----------------KALEAKKAPKTFM

Query:  ELLHEVFIAS---HVPSYFKAAVGPPSSTSRR-----------YTCIRCGIRFCSSRCQNIHNDTRCLKFVA
        ELLHE  + S   HVPSY KAAVGPPSSTSRR           YTCIRCGIRFCS RCQNIHNDTRCLKFVA
Subjt:  ELLHEVFIAS---HVPSYFKAAVGPPSSTSRR-----------YTCIRCGIRFCSSRCQNIHNDTRCLKFVA

TrEMBL top hitse value%identityAlignment
A0A0A0KH15 HIT-type domain-containing protein8.0e-6078.95Show/hide
Query:  MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDEDASLDDDD----------------QAKALEAKKAPKTFME
        MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAG+EVVENIDDEDASLDDDD                QAKALEAKKAPKTFME
Subjt:  MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDEDASLDDDD----------------QAKALEAKKAPKTFME

Query:  LLHEVFIAS---HVPSYFKAAVGPPSSTSRR-----------YTCIRCGIRFCSSRCQNIHNDTRCLKFVA
        LLHE  + S   HVPSY KAAVGPPSSTSRR           YTCIRCGIRFCSSRCQNIHNDTRCLKFVA
Subjt:  LLHEVFIAS---HVPSYFKAAVGPPSSTSRR-----------YTCIRCGIRFCSSRCQNIHNDTRCLKFVA

A0A1S3CKL9 SWR1 complex subunit 65.6e-6180.12Show/hide
Query:  MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDEDASLDDDD----------------QAKALEAKKAPKTFME
        MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDEDASLDDDD                QAKALEAKKAPKTFME
Subjt:  MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDEDASLDDDD----------------QAKALEAKKAPKTFME

Query:  LLHEVFIAS---HVPSYFKAAVGPPSSTSRR-----------YTCIRCGIRFCSSRCQNIHNDTRCLKFVA
        LLHE  + S   HVPSYFKAAVGPPSSTSRR           YTCIRCGIRFCSSRCQNIHNDTRCLKFVA
Subjt:  LLHEVFIAS---HVPSYFKAAVGPPSSTSRR-----------YTCIRCGIRFCSSRCQNIHNDTRCLKFVA

A0A6J1D2Z0 SWR1 complex subunit 6 isoform X11.9e-5675Show/hide
Query:  MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDEDASLDDDD-----------------QAKALEAKKAPKTFM
        MDDD+TN FRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGME+VENIDDEDASLDDDD                 QAKALEAKKAPKTFM
Subjt:  MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDEDASLDDDD-----------------QAKALEAKKAPKTFM

Query:  ELLHEVFIAS---HVPSYFKAAVGPPSSTSRR-----------YTCIRCGIRFCSSRCQNIHNDTRCLKFVA
        ELLHE  + S   +VPSY KAAVGPPSS+SRR           YTCIRCG+RFCS RCQNIHNDTRCLKFVA
Subjt:  ELLHEVFIAS---HVPSYFKAAVGPPSSTSRR-----------YTCIRCGIRFCSSRCQNIHNDTRCLKFVA

A0A6J1FTL5 SWR1 complex subunit 61.4e-5673.84Show/hide
Query:  MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDEDASLDDDD-----------------QAKALEAKKAPKTFM
        MDDD+TN FRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+E++ENIDDEDASLDDD+                 QAKALEAKKAPKTFM
Subjt:  MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDEDASLDDDD-----------------QAKALEAKKAPKTFM

Query:  ELLHEVFIAS---HVPSYFKAAVGPPSSTSRR-----------YTCIRCGIRFCSSRCQNIHNDTRCLKFVA
        ELLHE  + S   HVPSY KAAVGPPSSTSRR           YTCIRCG+RFCS RCQNIHNDTRCLKFVA
Subjt:  ELLHEVFIAS---HVPSYFKAAVGPPSSTSRR-----------YTCIRCGIRFCSSRCQNIHNDTRCLKFVA

A0A6J1JHH9 SWR1 complex subunit 61.4e-5673.84Show/hide
Query:  MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDEDASLDDDD-----------------QAKALEAKKAPKTFM
        MDDD+TN FRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+E++ENIDDEDASLDDD+                 QAKALEAKKAPKTFM
Subjt:  MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDEDASLDDDD-----------------QAKALEAKKAPKTFM

Query:  ELLHEVFIAS---HVPSYFKAAVGPPSSTSRR-----------YTCIRCGIRFCSSRCQNIHNDTRCLKFVA
        ELLHE  + S   HVPSY KAAVGPPSSTSRR           YTCIRCG+RFCS RCQNIHNDTRCLKFVA
Subjt:  ELLHEVFIAS---HVPSYFKAAVGPPSSTSRR-----------YTCIRCGIRFCSSRCQNIHNDTRCLKFVA

SwissProt top hitse value%identityAlignment
O43257 Zinc finger HIT domain-containing protein 11.7e-0631.45Show/hide
Query:  RRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDEDASLD---------DDDQAKALEAKKA---------PKTFMELLHEVFI
        ++ S R++    + V   A+   R      +LEALENDN         DD  A L          DDD     + KK           K F  LL E  +
Subjt:  RRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDEDASLD---------DDDQAKALEAKKA---------PKTFMELLHEVFI

Query:  A-SHVPSYFKAAVGPPSSTSR----------RYTCIRCGIRFCSSRCQNIHNDTRCLKF
        + +  P+Y  A  GPPS   R           YTC+ CG R+C+ RC   H +TRCLK+
Subjt:  A-SHVPSYFKAAVGPPSSTSR----------RYTCIRCGIRFCSSRCQNIHNDTRCLKF

Q24JY4 Zinc finger HIT domain-containing protein 11.7e-0631.45Show/hide
Query:  RRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDEDASLD---------DDDQAKALEAKKA---------PKTFMELLHEVFI
        ++ S R++    + V   A+   R      +LEALENDN         DD  A L          DDD     + KK           K F  LL E  +
Subjt:  RRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDEDASLD---------DDDQAKALEAKKA---------PKTFMELLHEVFI

Query:  A-SHVPSYFKAAVGPPSSTSR----------RYTCIRCGIRFCSSRCQNIHNDTRCLKF
        + +  P+Y  A  GPPS   R           YTC+ CG R+C+ RC   H +TRCLK+
Subjt:  A-SHVPSYFKAAVGPPSSTSR----------RYTCIRCGIRFCSSRCQNIHNDTRCLKF

Q54NW0 Zinc finger HIT domain-containing protein 1 homolog1.4e-0527.22Show/hide
Query:  SSRTRKVAPKMVAALASSDNRT---QAALARLEALENDNAGMEVVENIDDEDASLDDDD------------------QAKALEAKKAPKTFMELLHEVFI
        SS+ +    K     +  D R    +   ARLE+L++DN    +    D+ED   +DD+                  + K  E K     F ++L + ++
Subjt:  SSRTRKVAPKMVAALASSDNRT---QAALARLEALENDNAGMEVVENIDDEDASLDDDD------------------QAKALEAKKAPKTFMELLHEVFI

Query:  AS---HVPSYF----KAAVGPPSSTSR------RYTCIRCGIRFCSSRCQNIHNDTRC
         +   HVP+Y     K ++ PP            YTC +C  R+CS +C N HN+TRC
Subjt:  AS---HVPSYF----KAAVGPPSSTSR------RYTCIRCGIRFCSSRCQNIHNDTRC

Q8R331 Zinc finger HIT domain-containing protein 16.9e-0836.43Show/hide
Query:  RLEALENDNAGMEVVENIDDEDASLD---------DDDQAKALEAKKA---------PKTFMELLHEVFI-ASHVPSYFKAAVGPPSSTSR---------
        +LEALENDN         DD  A L          DDD     + KK           K F  LL E  + AS  P+Y  A  GPPS   R         
Subjt:  RLEALENDNAGMEVVENIDDEDASLD---------DDDQAKALEAKKA---------PKTFMELLHEVFI-ASHVPSYFKAAVGPPSSTSR---------

Query:  -RYTCIRCGIRFCSSRCQNIHNDTRCLKF
          YTC+ CG R+C+ RC   H +TRCLK+
Subjt:  -RYTCIRCGIRFCSSRCQNIHNDTRCLKF

Q9FHW2 SWR1 complex subunit 67.3e-4257.8Show/hide
Query:  MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDEDASLDDDD------------------QAKALEAKKAPKTF
        M+++ +N  RR+S+RTRKVA KM AAL S+DNRTQAA+ARLEALENDN  +EV++  DDE+ASLD+DD                  QAKALEA+KAPK+F
Subjt:  MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDEDASLDDDD------------------QAKALEAKKAPKTF

Query:  MELLHEV---FIASHVPSYFKAAVGPPSSTSRR-----------YTCIRCGIRFCSSRCQNIHNDTRCLKFVA
        +ELL E     + SHVP+Y KAAVGPPSS+SRR           Y C  CG+RFCS RCQNIH DTRC KFVA
Subjt:  MELLHEV---FIASHVPSYFKAAVGPPSSTSRR-----------YTCIRCGIRFCSSRCQNIHNDTRCLKFVA

Arabidopsis top hitse value%identityAlignment
AT5G37055.1 HIT-type Zinc finger family protein5.2e-4357.8Show/hide
Query:  MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDEDASLDDDD------------------QAKALEAKKAPKTF
        M+++ +N  RR+S+RTRKVA KM AAL S+DNRTQAA+ARLEALENDN  +EV++  DDE+ASLD+DD                  QAKALEA+KAPK+F
Subjt:  MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDEDASLDDDD------------------QAKALEAKKAPKTF

Query:  MELLHEV---FIASHVPSYFKAAVGPPSSTSRR-----------YTCIRCGIRFCSSRCQNIHNDTRCLKFVA
        +ELL E     + SHVP+Y KAAVGPPSS+SRR           Y C  CG+RFCS RCQNIH DTRC KFVA
Subjt:  MELLHEV---FIASHVPSYFKAAVGPPSSTSRR-----------YTCIRCGIRFCSSRCQNIHNDTRCLKFVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGATGATTCTACGAATCCATTCCGACGTATGTCTAGCCGTACTCGGAAGGTTGCTCCTAAGATGGTTGCTGCCCTAGCCAGCAGCGACAACCGTACGCAGGCAGC
ACTTGCTCGTCTCGAAGCATTGGAAAATGACAATGCGGGAATGGAAGTAGTCGAAAACATTGACGATGAGGATGCTTCTCTCGATGATGATGATCAAGCAAAAGCACTTG
AAGCTAAGAAAGCTCCCAAGACTTTCATGGAGCTTCTGCACGAGGTTTTCATTGCCTCCCATGTTCCATCATACTTCAAGGCGGCCGTTGGACCTCCAAGCTCTACCTCA
CGCCGCTACACGTGCATAAGGTGTGGAATCCGATTTTGTTCATCTCGTTGTCAGAATATACATAACGACACTCGTTGTTTGAAATTTGTTGCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGATGATTCTACGAATCCATTCCGACGTATGTCTAGCCGTACTCGGAAGGTTGCTCCTAAGATGGTTGCTGCCCTAGCCAGCAGCGACAACCGTACGCAGGCAGC
ACTTGCTCGTCTCGAAGCATTGGAAAATGACAATGCGGGAATGGAAGTAGTCGAAAACATTGACGATGAGGATGCTTCTCTCGATGATGATGATCAAGCAAAAGCACTTG
AAGCTAAGAAAGCTCCCAAGACTTTCATGGAGCTTCTGCACGAGGTTTTCATTGCCTCCCATGTTCCATCATACTTCAAGGCGGCCGTTGGACCTCCAAGCTCTACCTCA
CGCCGCTACACGTGCATAAGGTGTGGAATCCGATTTTGTTCATCTCGTTGTCAGAATATACATAACGACACTCGTTGTTTGAAATTTGTTGCCTAA
Protein sequenceShow/hide protein sequence
MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDEDASLDDDDQAKALEAKKAPKTFMELLHEVFIASHVPSYFKAAVGPPSSTS
RRYTCIRCGIRFCSSRCQNIHNDTRCLKFVA