CuGenDBv2

Gene ID	IVF0026469
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	primase homolog protein isoform X2
Genome location	chr12:17670201..17676675
RNA-Seq Expression	IVF0026469
Synteny	IVF0026469
Gene Ontology terms	GO:0032508 - DNA duplex unwinding (biological process) GO:0003697 - single-stranded DNA binding (molecular function) GO:0043139 - 5'-3' DNA helicase activity (molecular function)
InterPro domains	IPR006171 - TOPRIM domain IPR027032 - Twinkle-like protein IPR034154 - Archaeal primase DnaG/twinkle, TOPRIM domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008445790.1 PREDICTED: primase homolog protein isoform X2 [Cucumis melo]

1.02e-239

100

Show/hide

Query:  MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPVKVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR
        MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPVKVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR
Subjt:  MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPVKVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR

Query:  LMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQVVGRQVAIAFTY
        LMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQVVGRQVAIAFTY
Subjt:  LMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQVVGRQVAIAFTY

Query:  RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSR
        RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSR
Subjt:  RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSR

Query:  IILATDSDVPGQALAEELARRLGKHR
        IILATDSDVPGQALAEELARRLGKHR
Subjt:  IILATDSDVPGQALAEELARRLGKHR

XP_011659247.1 primase homolog protein isoform X1 [Cucumis sativus]

1.20e-218

91.74

Show/hide

Query:  MPINSTFTFNSNFNFNFKFI-HRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPVKVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGG
        MPINSTFTFNSNFNF FKFI HRS P S SLNNFSISSSPSRFL RFCTTRLSSA+SHAPP PPPVK L E+MDL+GIVCDEHCIPGKYYCLFCPKCKGG
Subjt:  MPINSTFTFNSNFNFNFKFI-HRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPVKVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGG

Query:  RLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQVVGRQVAIAFT
        RLMERSLSLHVIPTGDFAMWRCF+FECGWAG+IFADG+LAFNGF K  KMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQ+ GRQV IAFT
Subjt:  RLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQVVGRQVAIAFT

Query:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVS
        YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAP+KVSTDT+PPIEKD+AYQYLW CKDYLDKVS
Subjt:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVS

Query:  RIILATDSDVPGQALAEELARRLGKHR
        R+ILATDSDVPGQALAEELARRLGK+R
Subjt:  RIILATDSDVPGQALAEELARRLGKHR

XP_016899150.1 PREDICTED: primase homolog protein isoform X1 [Cucumis melo]

7.12e-238

99.69

Show/hide

Query:  MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPVKVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR
        MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPVKVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR
Subjt:  MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPVKVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR

Query:  LMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQVVGRQ-VAIAFT
        LMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQVVGRQ VAIAFT
Subjt:  LMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQVVGRQ-VAIAFT

Query:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVS
        YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVS
Subjt:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVS

Query:  RIILATDSDVPGQALAEELARRLGKHR
        RIILATDSDVPGQALAEELARRLGKHR
Subjt:  RIILATDSDVPGQALAEELARRLGKHR

XP_016899151.1 PREDICTED: primase homolog protein isoform X3 [Cucumis melo]

3.08e-219

94.8

Show/hide

Query:  MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPVKVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR
        MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPVKVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR
Subjt:  MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPVKVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR

Query:  LMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQVVGRQ-VAIAFT
        LMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQVVGRQ VAIAFT
Subjt:  LMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQVVGRQ-VAIAFT

Query:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVS
        YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEK                VS
Subjt:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVS

Query:  RIILATDSDVPGQALAEELARRLGKHR
        RIILATDSDVPGQALAEELARRLGKHR
Subjt:  RIILATDSDVPGQALAEELARRLGKHR

XP_016899152.1 PREDICTED: primase homolog protein isoform X4 [Cucumis melo]

3.38e-238

99.69

Show/hide

Query:  MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPVKVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR
        MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPVKVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR
Subjt:  MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPVKVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR

Query:  LMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQVVGRQ-VAIAFT
        LMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQVVGRQ VAIAFT
Subjt:  LMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQVVGRQ-VAIAFT

Query:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVS
        YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVS
Subjt:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVS

Query:  RIILATDSDVPGQALAEELARRLGKHR
        RIILATDSDVPGQALAEELARRLGKHR
Subjt:  RIILATDSDVPGQALAEELARRLGKHR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LYN4 Toprim domain-containing protein

2.2e-172

91.74

Show/hide

Query:  MPINSTFTFNSNFNFNFKFI-HRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPVKVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGG
        MPINSTFTFNSNFNF FKFI HRS P S SLNNFSISSSPSRF LRFCTTRLSSA+SHAPP PPPVK L E+MDL+GIVCDEHCIPGKYYCLFCPKCKGG
Subjt:  MPINSTFTFNSNFNFNFKFI-HRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPVKVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGG

Query:  RLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQVVGRQVAIAFT
        RLMERSLSLHVIPTGDFAMWRCF+FECGWAG+IFADG+LAFNGF K  KMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQ+ GRQV IAFT
Subjt:  RLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQVVGRQVAIAFT

Query:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVS
        YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAP+KVSTDT+PPIEKD+AYQYLW CKDYLDKVS
Subjt:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVS

Query:  RIILATDSDVPGQALAEELARRLGKHR
        R+ILATDSDVPGQALAEELARRLGK+R
Subjt:  RIILATDSDVPGQALAEELARRLGKHR

A0A1S3BDI8 primase homolog protein isoform X2

2.2e-188

100

Show/hide

Query:  MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPVKVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR
        MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPVKVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR
Subjt:  MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPVKVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR

Query:  LMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQVVGRQVAIAFTY
        LMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQVVGRQVAIAFTY
Subjt:  LMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQVVGRQVAIAFTY

Query:  RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSR
        RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSR
Subjt:  RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSR

Query:  IILATDSDVPGQALAEELARRLGKHR
        IILATDSDVPGQALAEELARRLGKHR
Subjt:  IILATDSDVPGQALAEELARRLGKHR

A0A1S4DT27 primase homolog protein isoform X4

5.4e-187

99.69

Show/hide

Query:  MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPVKVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR
        MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPVKVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR
Subjt:  MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPVKVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR

Query:  LMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQVVGR-QVAIAFT
        LMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQVVGR QVAIAFT
Subjt:  LMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQVVGR-QVAIAFT

Query:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVS
        YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVS
Subjt:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVS

Query:  RIILATDSDVPGQALAEELARRLGKHR
        RIILATDSDVPGQALAEELARRLGKHR
Subjt:  RIILATDSDVPGQALAEELARRLGKHR

A0A1S4DT34 primase homolog protein isoform X3

1.7e-172

94.8

Show/hide

Query:  MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPVKVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR
        MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPVKVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR
Subjt:  MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPVKVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR

Query:  LMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQVVGR-QVAIAFT
        LMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQVVGR QVAIAFT
Subjt:  LMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQVVGR-QVAIAFT

Query:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVS
        YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIE                KVS
Subjt:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVS

Query:  RIILATDSDVPGQALAEELARRLGKHR
        RIILATDSDVPGQALAEELARRLGKHR
Subjt:  RIILATDSDVPGQALAEELARRLGKHR

A0A1S4DTX2 primase homolog protein isoform X1

5.4e-187

99.69

Show/hide

Query:  MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPVKVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR
        MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPVKVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR
Subjt:  MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPVKVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGR

Query:  LMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQVVGR-QVAIAFT
        LMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQVVGR QVAIAFT
Subjt:  LMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQVVGR-QVAIAFT

Query:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVS
        YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVS
Subjt:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVS

Query:  RIILATDSDVPGQALAEELARRLGKHR
        RIILATDSDVPGQALAEELARRLGKHR
Subjt:  RIILATDSDVPGQALAEELARRLGKHR

SwissProt top hits

e value

%identity

Alignment

B5X582 Twinkle homolog protein, chloroplastic/mitochondrial

9.7e-77

54.62

Show/hide

Query:  LREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDEL
        LR K+   G+   E+C PG++  L CP C+GG   E+SLSL + P G  A W CFR +CG  G + ADG LA       EK+  + + E + LEPLCDE+
Subjt:  LREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDEL

Query:  ISYFSMRMISQETLERNVVMQV-VGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGG
          YF+ R IS++TLERN VMQ  +G ++ IAFTY Q G+LV CKYR++ K F+QE+ T + LYG+DDI    E+IIVEGE+DKL++EEAGFLNC+SVP G
Subjt:  ISYFSMRMISQETLERNVVMQV-VGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGG

Query:  APSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHR
        AP+KVS+  IP  +KD+ Y++LW C DYL K SRI++ATD D PGQA+AEE+ARRLGK R
Subjt:  APSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHR

F4I6E6 Primase homolog protein

2.1e-71

53.57

Show/hide

Query:  EHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRL-AFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQE
        ++C PG   CL CPKC+ G   E+SL+L++ P G  A W C R +CG  G +  DG+L + +   K E+ +   + ES+ LEPLCDE+  +F+ R IS +
Subjt:  EHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRL-AFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQE

Query:  TLERNVVMQV-VGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPP
        TLERN VMQ  +  ++ IAFTY Q G+LV CKYR++ K+F QE+ T K LYG+DDI +  E+IIVEGE DKL++EEAGF NC+SVP GAP  VS+  IP 
Subjt:  TLERNVVMQV-VGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPP

Query:  IEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRSQLM
          KD+A++Y+W C DYL K SRI++ATD D PGQALAEELARRLGK R  L+
Subjt:  IEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRSQLM

Arabidopsis top hits

e value

%identity

Alignment

AT1G30660.1 nucleic acid binding;nucleic acid binding

1.5e-72

53.57

Show/hide

Query:  EHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRL-AFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQE
        ++C PG   CL CPKC+ G   E+SL+L++ P G  A W C R +CG  G +  DG+L + +   K E+ +   + ES+ LEPLCDE+  +F+ R IS +
Subjt:  EHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRL-AFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQE

Query:  TLERNVVMQV-VGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPP
        TLERN VMQ  +  ++ IAFTY Q G+LV CKYR++ K+F QE+ T K LYG+DDI +  E+IIVEGE DKL++EEAGF NC+SVP GAP  VS+  IP 
Subjt:  TLERNVVMQV-VGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPP

Query:  IEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRSQLM
          KD+A++Y+W C DYL K SRI++ATD D PGQALAEELARRLGK R  L+
Subjt:  IEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRSQLM

AT1G30680.1 toprim domain-containing protein

6.9e-78

54.62

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Query:  LREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDEL
        LR K+   G+   E+C PG++  L CP C+GG   E+SLSL + P G  A W CFR +CG  G + ADG LA       EK+  + + E + LEPLCDE+
Subjt:  LREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDEL

Query:  ISYFSMRMISQETLERNVVMQV-VGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGG
          YF+ R IS++TLERN VMQ  +G ++ IAFTY Q G+LV CKYR++ K F+QE+ T + LYG+DDI    E+IIVEGE+DKL++EEAGFLNC+SVP G
Subjt:  ISYFSMRMISQETLERNVVMQV-VGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGG

Query:  APSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHR
        AP+KVS+  IP  +KD+ Y++LW C DYL K SRI++ATD D PGQA+AEE+ARRLGK R
Subjt:  APSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHR

Sequences

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CDS sequence

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ATGCCAATAAACTCAACTTTCACCTTCAATTCCAATTTCAACTTCAACTTCAAATTCATTCATCGCTCTTCCCCTTCCTCTCTTTCTCTAAACAATTTCTCCATTTCCTC
TTCCCCTTCCCGATTCCTTCTTCGCTTCTGCACTACCAGACTATCTTCCGCCCTTTCTCATGCTCCACCGTTGCCGCCGCCAGTGAAGGTTCTTAGGGAGAAGATGGATC
TTATTGGAATCGTTTGTGATGAACATTGTATCCCTGGAAAGTACTATTGCCTCTTCTGTCCCAAGTGCAAGGGTGGTCGTTTAATGGAGAGGAGCTTATCTCTTCATGTG
ATTCCAACTGGAGATTTTGCAATGTGGAGGTGTTTCCGGTTTGAGTGTGGTTGGGCAGGCCGGATATTTGCAGATGGCAGATTGGCATTTAATGGATTCAGCAAAACTGA
AAAAATGGTTGGACGGAGTTCAAAGGAAAGTTTGGTTTTGGAGCCTCTTTGTGATGAGCTAATCTCTTATTTCAGCATGAGAATGATATCCCAAGAAACCTTAGAACGGA
ATGTTGTTATGCAAGTAGTTGGTCGTCAGGTTGCTATTGCATTTACTTATCGTCAAAATGGACAGCTTGTCGGTTGCAAGTATCGAACCATGGACAAGAGATTTTGGCAG
GAGAAGGGTACAGCAAAGTTCCTGTATGGGATTGATGACATTAATGATGCAGATGAACTCATCATTGTTGAAGGTGAAATGGATAAACTTTCAGTTGAAGAAGCTGGTTT
CCTGAATTGTATCAGTGTTCCTGGTGGTGCCCCAAGCAAGGTTTCAACTGATACAATTCCACCAATTGAAAAGGATTCTGCATACCAATATTTATGGGGCTGCAAAGACT
ACTTAGATAAGGTTTCCCGCATTATCTTGGCCACTGATAGCGATGTACCAGGGCAAGCTTTGGCAGAAGAGCTAGCACGTCGTCTTGGAAAACACAGGTCCCAACTCATG
TGTAAATTTTTGGTTTGA

mRNA sequence

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GGGTTATCCCAAGATAATAAGATGGCATGTGCTTAAAGCATCTGTTTGTTTTGATGGAAGCAATAAAGATACCCAATCTTTTTCCAACTGTCATAACTTCCAATAAACAA
AGAAAACCTTGTGTGTGTGTGTGTGTGTGTGTGTGAAGCAGATAAGGCCTCTTCCACTCTGCTCTTCCATTTCTCTCCAAATCCATTCAATTCAAATGCCAATAAACTCA
ACTTTCACCTTCAATTCCAATTTCAACTTCAACTTCAAATTCATTCATCGCTCTTCCCCTTCCTCTCTTTCTCTAAACAATTTCTCCATTTCCTCTTCCCCTTCCCGATT
CCTTCTTCGCTTCTGCACTACCAGACTATCTTCCGCCCTTTCTCATGCTCCACCGTTGCCGCCGCCAGTGAAGGTTCTTAGGGAGAAGATGGATCTTATTGGAATCGTTT
GTGATGAACATTGTATCCCTGGAAAGTACTATTGCCTCTTCTGTCCCAAGTGCAAGGGTGGTCGTTTAATGGAGAGGAGCTTATCTCTTCATGTGATTCCAACTGGAGAT
TTTGCAATGTGGAGGTGTTTCCGGTTTGAGTGTGGTTGGGCAGGCCGGATATTTGCAGATGGCAGATTGGCATTTAATGGATTCAGCAAAACTGAAAAAATGGTTGGACG
GAGTTCAAAGGAAAGTTTGGTTTTGGAGCCTCTTTGTGATGAGCTAATCTCTTATTTCAGCATGAGAATGATATCCCAAGAAACCTTAGAACGGAATGTTGTTATGCAAG
TAGTTGGTCGTCAGGTTGCTATTGCATTTACTTATCGTCAAAATGGACAGCTTGTCGGTTGCAAGTATCGAACCATGGACAAGAGATTTTGGCAGGAGAAGGGTACAGCA
AAGTTCCTGTATGGGATTGATGACATTAATGATGCAGATGAACTCATCATTGTTGAAGGTGAAATGGATAAACTTTCAGTTGAAGAAGCTGGTTTCCTGAATTGTATCAG
TGTTCCTGGTGGTGCCCCAAGCAAGGTTTCAACTGATACAATTCCACCAATTGAAAAGGATTCTGCATACCAATATTTATGGGGCTGCAAAGACTACTTAGATAAGGTTT
CCCGCATTATCTTGGCCACTGATAGCGATGTACCAGGGCAAGCTTTGGCAGAAGAGCTAGCACGTCGTCTTGGAAAACACAGGTCCCAACTCATGTGTAAATTTTTGGTT
TGATAATCTTATAAATTGAGATCAAACTTTTATATCCGACAAAATGAACATAGTTCAACTGACAATTCAATTTTTCCCTTTCATATGGATAAAATATCATGACTTTGTTT
CATGGATTAACAGATGTTGGCGAGTAGATTGGCCATATAAAGATGGCTTCAACCGTTTTAAGGATGCCAATGAGGTTCTTGTCCACTTGGGACCAGATGCTTTGAAGAAC
GCAATTCAAGATGCCAAGTTTTATCAACTTTCAATTTCAATTTCAATACAAAAAGAAGAGGGCCTGTTCCAAGAGCATTGACAATTCTGGTAAACAAGATCGAGTAGAGT
AATCCATAATACTTAGGTTTAGTAGTTGCAGTAGCTAGAGAGATCATGTATGTTCTTTGATACATAAGAAGCCTTGGATTATATATTAAGAAAAAAG

Protein sequence

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MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPVKVLREKMDLIGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHV
IPTGDFAMWRCFRFECGWAGRIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQVVGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQ
EKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRSQLM
CKFLV

IVF0026469 (gene) of Melon (IVF77) v1 genome