CuGenDBv2

Gene ID	IVF0026484
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	40S ribosomal protein S13
Genome location	chr03:26043284..26043695
RNA-Seq Expression	IVF0026484
Synteny	IVF0026484
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005730 - nucleolus (cellular component) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR000589 - Ribosomal protein S15 IPR009068 - S15/NS1, RNA-binding IPR012606 - Ribosomal protein S13/S15, N-terminal IPR023029 - Ribosomal protein S15P

Homology

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GenBank top hits

e value

%identity

Alignment

EXC17873.1 40S ribosomal protein S13 [Morus notabilis]

4.18e-55

79.49

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Query:  MGRMHSRGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI---------------EDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
        MGRMHSRGKGISASALPYKR PPSWLKISS DVE+N+CKFAKKGLTPSQI               EDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Subjt:  MGRMHSRGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI---------------EDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES

Query:  RIHRLARYYKNSPTLKP
        RIHRLARYYK +  L P
Subjt:  RIHRLARYYKNSPTLKP

KAG7036084.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.49e-54

70.07

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Query:  MGRMHSRGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI-----------------------------------EDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR PPSWLKISSTDVEDNICKFAKKGLTPSQI                                   EDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI-----------------------------------EDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKNSPTLKP
        HLERNRKDKDSKFRLILVESRIHRLARYYK +  L P
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKNSPTLKP

XP_004147576.1 40S ribosomal protein S13 [Cucumis sativus]

9.21e-54

70.07

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Query:  MGRMHSRGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI-----------------------------------EDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR PPSWLKISSTDVEDNICKFAKKGLTPSQI                                   EDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI-----------------------------------EDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKNSPTLKP
        HLERNRKDKDSKFRLILVESRIHRLARYYK +  L P
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKNSPTLKP

XP_022922396.1 40S ribosomal protein S13-like [Cucurbita moschata]

9.21e-54

70.07

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Query:  MGRMHSRGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI-----------------------------------EDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR PPSWLKISSTDVEDNICKFAKKGLTPSQI                                   EDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI-----------------------------------EDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKNSPTLKP
        HLERNRKDKDSKFRLILVESRIHRLARYYK +  L P
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKNSPTLKP

XP_038874585.1 40S ribosomal protein S13-like [Benincasa hispida]

9.21e-54

70.07

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Query:  MGRMHSRGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI-----------------------------------EDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR PPSWLKISSTDVEDNICKFAKKGLTPSQI                                   EDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI-----------------------------------EDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKNSPTLKP
        HLERNRKDKDSKFRLILVESRIHRLARYYK +  L P
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKNSPTLKP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KMS8 Ribosomal_S13_N domain-containing protein

7.9e-41

70.07

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Query:  MGRMHSRGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI-----------------------------------EDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR PPSWLKISSTDVEDNICKFAKKGLTPSQI                                   EDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI-----------------------------------EDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKNSPTLKP
        HLERNRKDKDSKFRLILVESRIHRLARYYK +  L P
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKNSPTLKP

A0A1S3ATA6 40S ribosomal protein S13-like

7.9e-41

70.07

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Query:  MGRMHSRGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI-----------------------------------EDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR PPSWLKISSTDVEDNICKFAKKGLTPSQI                                   EDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI-----------------------------------EDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKNSPTLKP
        HLERNRKDKDSKFRLILVESRIHRLARYYK +  L P
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKNSPTLKP

A0A6J1E411 40S ribosomal protein S13-like

7.9e-41

70.07

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Query:  MGRMHSRGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI-----------------------------------EDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR PPSWLKISSTDVEDNICKFAKKGLTPSQI                                   EDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI-----------------------------------EDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKNSPTLKP
        HLERNRKDKDSKFRLILVESRIHRLARYYK +  L P
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKNSPTLKP

A0A6J1HYG9 40S ribosomal protein S13-like

7.9e-41

70.07

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Query:  MGRMHSRGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI-----------------------------------EDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR PPSWLKISSTDVEDNICKFAKKGLTPSQI                                   EDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI-----------------------------------EDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKNSPTLKP
        HLERNRKDKDSKFRLILVESRIHRLARYYK +  L P
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKNSPTLKP

W9RYU7 40S ribosomal protein S13

1.2e-41

79.49

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Query:  MGRMHSRGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI---------------EDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
        MGRMHSRGKGISASALPYKR PPSWLKISS DVE+N+CKFAKKGLTPSQI               EDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Subjt:  MGRMHSRGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI---------------EDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES

Query:  RIHRLARYYKNSPTLKP
        RIHRLARYYK +  L P
Subjt:  RIHRLARYYKNSPTLKP

SwissProt top hits

e value

%identity

Alignment

P46298 40S ribosomal protein S13

7.9e-38

62.77

Show/hide

Query:  MGRMHSRGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI-----------------------------------EDLYHLIKKAVSIRK
        MGR+HS+GKGIS+SALPY+R  PSWLKISS DV++ ICKFAKKGLTPSQI                                   EDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI-----------------------------------EDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKNSPTLKP
        HLER RKDKDSKFRLILVESRIHRLARYYK +  L P
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKNSPTLKP

P59223 40S ribosomal protein S13-1

1.6e-38

63.5

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Query:  MGRMHSRGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI-----------------------------------EDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR  PSWLK +  DV+++ICKFAKKGLTPSQI                                   EDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI-----------------------------------EDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKNSPTLKP
        HLERNRKDKDSKFRLILVESRIHRLARYYK +  L P
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKNSPTLKP

P59224 40S ribosomal protein S13-2

4.2e-39

64.23

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Query:  MGRMHSRGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI-----------------------------------EDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR  PSWLK +S DV+++ICKFAKKGLTPSQI                                   EDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI-----------------------------------EDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKNSPTLKP
        HLERNRKDKDSKFRLILVESRIHRLARYYK +  L P
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKNSPTLKP

P62302 40S ribosomal protein S13

6.9e-42

67.88

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Query:  MGRMHSRGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI-----------------------------------EDLYHLIKKAVSIRK
        MGRMHSRGKGIS+SALPYKR PPSWLKISS DVE+NICKFAKKGLTPSQI                                   EDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI-----------------------------------EDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKNSPTLKP
        HLERNRKDKDSKFRLILVESRIHRLARYYK +  L P
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKNSPTLKP

Q69UI1 40S ribosomal protein S13-2

4.8e-35

60.58

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Query:  MGRMHSRGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI-----------------------------------EDLYHLIKKAVSIRK
        MGRMHSRGKGIS+SALPYKR PPSWLK +++DVE+ I K AKKG  PSQI                                   EDLY LIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI-----------------------------------EDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKNSPTLKP
        HLERNRKDKDSKFRLILVESRIHRLARYYK +  L P
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKNSPTLKP

Arabidopsis top hits

e value

%identity

Alignment

AT3G60770.1 Ribosomal protein S13/S15

1.1e-39

63.5

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Query:  MGRMHSRGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI-----------------------------------EDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR  PSWLK +  DV+++ICKFAKKGLTPSQI                                   EDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI-----------------------------------EDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKNSPTLKP
        HLERNRKDKDSKFRLILVESRIHRLARYYK +  L P
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKNSPTLKP

AT4G00100.1 ribosomal protein S13A

3.0e-40

64.23

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Query:  MGRMHSRGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI-----------------------------------EDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR  PSWLK +S DV+++ICKFAKKGLTPSQI                                   EDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI-----------------------------------EDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKNSPTLKP
        HLERNRKDKDSKFRLILVESRIHRLARYYK +  L P
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKNSPTLKP

Sequences

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CDS sequence

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ATGGGTCGTATGCACAGTCGTGGTAAGGGTATTTCCGCCTCTGCATTGCCCTACAAGAGGATGCCACCAAGTTGGCTCAAGATCTCTTCTACGGATGTTGAAGATAATAT
CTGCAAATTTGCGAAGAAGGGCTTAACCCCTTCTCAAATTGAGGATCTCTATCACTTAATCAAGAAAGCAGTTTCCATCCGTAAGCATTTGGAGAGGAACAGGAAGGACA
AAGACTCCAAGTTCAGATTGATTCTCGTGGAGAGCAGAATTCACAGACTTGCTCGTTACTATAAGAACTCTCCTACCCTTAAACCATAA

mRNA sequence

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Protein sequence

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MGRMHSRGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQIEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKNSPTLKP

IVF0026484 (gene) of Melon (IVF77) v1 genome