CuGenDBv2

Gene ID	IVF0026513
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase
Genome location	chr01:17085800..17086144
RNA-Seq Expression	IVF0026513
Synteny	IVF0026513
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036604.1 polyprotein [Cucumis melo var. makuwa]

6.58e-59

97.12

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Query:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQR
        MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQ+
Subjt:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQR

Query:  RKMG
        +K G
Subjt:  RKMG

KAA0041960.1 reverse transcriptase [Cucumis melo var. makuwa]

2.98e-60

93.27

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Query:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQR
        MAIPL SSENSGETVPKEIMRVLEKY DVMPDSLPKSLPPRRMIDHEIELVPG KPPAKNAYRMAPPELAELRKQLDELLNA FIRPAKAPYGAPVLFQ+
Subjt:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQR

Query:  RKMG
        +K G
Subjt:  RKMG

KAA0050675.1 uncharacterized protein E6C27_scaffold673G001580 [Cucumis melo var. makuwa]

4.06e-62

95.19

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Query:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQR
        MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPG KPP KNAYRMAPPELAELRKQLDELLNAGFI+PAKAPYGAPVLFQR
Subjt:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQR

Query:  RKMG
        +K G
Subjt:  RKMG

TYK11032.1 RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa]

1.29e-59

93.14

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Query:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQR
        MAIPL SSENSGET+PKEIM VLEKYRDVMPDSLPKSLPPRRMIDHEIELV G KPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQ+
Subjt:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQR

Query:  RK
        +K
Subjt:  RK

TYK28653.1 reverse transcriptase [Cucumis melo var. makuwa]

1.79e-59

93.27

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Query:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQR
        MAIPL SSENSGETV KEI+RVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPG KPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQ+
Subjt:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQR

Query:  RKMG
        +K G
Subjt:  RKMG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SZ91 Polyprotein

8.0e-50

97.12

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Query:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQR
        MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQ+
Subjt:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQR

Query:  RKMG
        +K G
Subjt:  RKMG

A0A5A7T0E2 Reverse transcriptase

3.0e-49

97.12

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Query:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQR
        MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPG KPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQR
Subjt:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQR

Query:  RKMG
        +K G
Subjt:  RKMG

A0A5A7UXR6 Reverse transcriptase

3.0e-49

97.12

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Query:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQR
        MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPG KPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQR
Subjt:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQR

Query:  RKMG
        +K G
Subjt:  RKMG

A0A5D3BRZ6 Reverse transcriptase

3.0e-49

97.12

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Query:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQR
        MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPG KPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQR
Subjt:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQR

Query:  RKMG
        +K G
Subjt:  RKMG

A0A5D3C4R1 Reverse transcriptase

3.0e-49

97.12

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Query:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQR
        MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPG KPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQR
Subjt:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQR

Query:  RKMG
        +K G
Subjt:  RKMG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGCCATCCCACTCAAATCGTCAGAGAACTCAGGGGAGACAGTCCCTAAGGAGATCATGCGCGTGCTAGAGAAATACCGTGATGTGATGCCCGATAGTTTGCCCAAGTC
TTTGCCACCTCGGAGAATGATTGATCATGAGATCGAGTTAGTGCCTGGGCCAAAACCGCCTGCGAAGAATGCTTATCGTATGGCGCCTCCGGAGTTAGCTGAACTTCGGA
AACAGTTAGATGAACTACTGAATGCAGGGTTTATCAGGCCTGCAAAAGCTCCGTATGGGGCCCCAGTTCTTTTCCAAAGAAGAAAGATGGGAGTTTACGACTGTGCATTG
ATTATCGCGCCCTAA

mRNA sequence

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Protein sequence

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MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGPKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRRKMGVYDCAL
IIAP

IVF0026513 (gene) of Melon (IVF77) v1 genome