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IVF0026524 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0026524
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr12:8965076..8965689
RNA-Seq ExpressionIVF0026524
SyntenyIVF0026524
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051981.1 hypothetical protein E6C27_scaffold60G004640 [Cucumis melo var. makuwa]1.68e-4154.43Show/hide
Query:  SSPQICCIREGYHLKHVAAKNVFVSNMLQLRMSSSQICCNREGRR----LKYVTSKKAIVSNMLQPRMLSSQVYCSRECRRLKYIVAKKVVVSSILQPRM
        SS QICC ++   LK++ A+NV VS+MLQ RMSSS+IC NRE       LKYV ++K IVSNMLQPR  SSQ+ CS++   LKYIVA+KVVVS ILQPRM
Subjt:  SSPQICCIREGYHLKHVAAKNVFVSNMLQLRMSSSQICCNREGRR----LKYVTSKKAIVSNMLQPRMLSSQVYCSRECRRLKYIVAKKVVVSSILQPRM

Query:  SSSQVCCSREGCSFKYVTAKRTFIV-------FIFSHVLQPRRSTSSSSCGACDHHLQ
        SSSQ+CC REG   KYV  ++  ++        I S++LQPRRS+S   C   D  L+
Subjt:  SSSQVCCSREGCSFKYVTAKRTFIV-------FIFSHVLQPRRSTSSSSCGACDHHLQ

KAA0059640.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.62e-4457.32Show/hide
Query:  CIREGYHLKHVAAKNVFVSNMLQLRMSSSQICCNREGRRLKYVTSKKAIVSNMLQPRMLSSQVYCSRECRRLKYIVAKKVVVSSILQPRMSSSQVCCSRE
        C +E +HLK+VA + V + NMLQLR S SQ C +RE  RLKYV ++K IVSNMLQPR  SSQ+ C++E R LKY+ A+KVVVS++LQPR S SQ+CCSRE
Subjt:  CIREGYHLKHVAAKNVFVSNMLQLRMSSSQICCNREGRRLKYVTSKKAIVSNMLQPRMLSSQVYCSRECRRLKYIVAKKVVVSSILQPRMSSSQVCCSRE

Query:  GCSFKYVTAKRTF---IVFIFSHVLQPRRSTSSSSCGACDHHLQCSTT--IIIFNNVAQTIIIF
        G   KYV   R+         +H L+  +S+SS S  A DHHLQC+ T  IIIFNN AQTIIIF
Subjt:  GCSFKYVTAKRTF---IVFIFSHVLQPRRSTSSSSCGACDHHLQCSTT--IIIFNNVAQTIIIF

KAA0060518.1 hypothetical protein E6C27_scaffold22G003700 [Cucumis melo var. makuwa]1.90e-4551.89Show/hide
Query:  SSPQICCIREGYHLKHVAAKNVFVSNMLQLRMSSSQICCNREGRRLKYVTSKKAIVSNMLQPRMLSSQVYCSRECRRLKYIVAKKVVVSSILQPRMSSSQ
        SS  +CC RE  HLKHV A+ V  SNML  R  SSQIC +R+G RLKYVT +K I+SNMLQ R  SSQ+ CSRE RRLKY+  +KVVVS++LQP      
Subjt:  SSPQICCIREGYHLKHVAAKNVFVSNMLQLRMSSSQICCNREGRRLKYVTSKKAIVSNMLQPRMLSSQVYCSRECRRLKYIVAKKVVVSSILQPRMSSSQ

Query:  VCCSREGCSFKYVTAKRTFIVFIFSHVLQPRRSTSSSSC------------------GACDHHLQCST--TIIIFNNVAQTIIIF
           S+EG   KYV A++  +    S++LQPRRS+S   C                  GA DHHLQC T   IIIFNN A+TIIIF
Subjt:  VCCSREGCSFKYVTAKRTFIVFIFSHVLQPRRSTSSSSC------------------GACDHHLQCST--TIIIFNNVAQTIIIF

KAA0066592.1 hypothetical protein E6C27_scaffold25G001670 [Cucumis melo var. makuwa]3.40e-4559.26Show/hide
Query:  SSPQICCIREGYHLKHVAAKNVFVSNMLQLRMSSSQICCNREGRRLKYVTSKKAIVSNMLQPRMLSSQVYCSRECRRLKYIVAKKVVVSSILQPRMSSSQ
        SS QIC  +EG HLK+VA + V VSNMLQLR SS QICC+REGRRLKYV  +K +VSNMLQ RM SS + CS+ECRRLKY+  +KV+VS++LQ R+SSSQ
Subjt:  SSPQICCIREGYHLKHVAAKNVFVSNMLQLRMSSSQICCNREGRRLKYVTSKKAIVSNMLQPRMLSSQVYCSRECRRLKYIVAKKVVVSSILQPRMSSSQ

Query:  VCCSREGCSFKYVTAKRTFIVFIFSHVLQPRRSTS
        +CCS+E    KY T ++  +    S++LQ RR+ S
Subjt:  VCCSREGCSFKYVTAKRTFIVFIFSHVLQPRRSTS

TYK08171.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.62e-4457.32Show/hide
Query:  CIREGYHLKHVAAKNVFVSNMLQLRMSSSQICCNREGRRLKYVTSKKAIVSNMLQPRMLSSQVYCSRECRRLKYIVAKKVVVSSILQPRMSSSQVCCSRE
        C +E +HLK+VA + V + NMLQLR S SQ C +RE  RLKYV ++K IVSNMLQPR  SSQ+ C++E R LKY+ A+KVVVS++LQPR S SQ+CCSRE
Subjt:  CIREGYHLKHVAAKNVFVSNMLQLRMSSSQICCNREGRRLKYVTSKKAIVSNMLQPRMLSSQVYCSRECRRLKYIVAKKVVVSSILQPRMSSSQVCCSRE

Query:  GCSFKYVTAKRTF---IVFIFSHVLQPRRSTSSSSCGACDHHLQCSTT--IIIFNNVAQTIIIF
        G   KYV   R+         +H L+  +S+SS S  A DHHLQC+ T  IIIFNN AQTIIIF
Subjt:  GCSFKYVTAKRTF---IVFIFSHVLQPRRSTSSSSCGACDHHLQCSTT--IIIFNNVAQTIIIF

TrEMBL top hitse value%identityAlignment
A0A5A7UWX8 Ty3-gypsy retrotransposon protein1.8e-3757.32Show/hide
Query:  CIREGYHLKHVAAKNVFVSNMLQLRMSSSQICCNREGRRLKYVTSKKAIVSNMLQPRMLSSQVYCSRECRRLKYIVAKKVVVSSILQPRMSSSQVCCSRE
        C +E +HLK+VA + V + NMLQLR S SQ C +RE  RLKYV ++K IVSNMLQPR  SSQ+ C++E R LKY+ A+KVVVS++LQPR S SQ+CCSRE
Subjt:  CIREGYHLKHVAAKNVFVSNMLQLRMSSSQICCNREGRRLKYVTSKKAIVSNMLQPRMLSSQVYCSRECRRLKYIVAKKVVVSSILQPRMSSSQVCCSRE

Query:  GCSFKYVTAKR---TFIVFIFSHVLQPRRSTSSSSCGACDHHLQCSTT--IIIFNNVAQTIIIF
        G   KYV   R   +      +H L+  +S+SS S  A DHHLQC+ T  IIIFNN AQTIIIF
Subjt:  GCSFKYVTAKR---TFIVFIFSHVLQPRRSTSSSSCGACDHHLQCSTT--IIIFNNVAQTIIIF

A0A5A7VE10 Uncharacterized protein4.1e-3459.26Show/hide
Query:  SSPQICCIREGYHLKHVAAKNVFVSNMLQLRMSSSQICCNREGRRLKYVTSKKAIVSNMLQPRMLSSQVYCSRECRRLKYIVAKKVVVSSILQPRMSSSQ
        SS QIC  +EG HLK+VA + V VSNMLQLR SS QICC+REGRRLKYV  +K +VSNMLQ RM SS + CS+ECRRLKY+  +KV+VS++LQ R+SSSQ
Subjt:  SSPQICCIREGYHLKHVAAKNVFVSNMLQLRMSSSQICCNREGRRLKYVTSKKAIVSNMLQPRMLSSQVYCSRECRRLKYIVAKKVVVSSILQPRMSSSQ

Query:  VCCSREGCSFKYVTAKRTFIVFIFSHVLQPRRSTS
        +CCS+E    KY T ++     + S++LQ RR+ S
Subjt:  VCCSREGCSFKYVTAKRTFIVFIFSHVLQPRRSTS

A0A5D3BNW3 Uncharacterized protein2.2e-3551.89Show/hide
Query:  SSPQICCIREGYHLKHVAAKNVFVSNMLQLRMSSSQICCNREGRRLKYVTSKKAIVSNMLQPRMLSSQVYCSRECRRLKYIVAKKVVVSSILQPRMSSSQ
        SS  +CC RE  HLKHV A+ V  SNML  R  SSQIC +R+G RLKYVT +K I+SNMLQ R  SSQ+ CSRE RRLKY+  +KVVVS++LQP      
Subjt:  SSPQICCIREGYHLKHVAAKNVFVSNMLQLRMSSSQICCNREGRRLKYVTSKKAIVSNMLQPRMLSSQVYCSRECRRLKYIVAKKVVVSSILQPRMSSSQ

Query:  VCCSREGCSFKYVTAKRTFIVFIFSHVLQPRRSTSSSSC------------------GACDHHLQCST--TIIIFNNVAQTIIIF
           S+EG   KYV A++  +    S++LQPRRS+S   C                  GA DHHLQC T   IIIFNN A+TIIIF
Subjt:  VCCSREGCSFKYVTAKRTFIVFIFSHVLQPRRSTSSSSC------------------GACDHHLQCST--TIIIFNNVAQTIIIF

A0A5D3C2C8 Retrotransposon gag protein6.0e-3354.43Show/hide
Query:  SSPQICCIREGYHLKHVAAKNVFVSNMLQLRMSSSQICCNREGRR----LKYVTSKKAIVSNMLQPRMLSSQVYCSRECRRLKYIVAKKVVVSSILQPRM
        SS QICC ++   LK++ A+NV VS+MLQ RMSSS+IC NRE       LKYV ++K IVSNMLQPR  SSQ+ CS++   LKYIVA+KVVVS ILQPRM
Subjt:  SSPQICCIREGYHLKHVAAKNVFVSNMLQLRMSSSQICCNREGRR----LKYVTSKKAIVSNMLQPRMLSSQVYCSRECRRLKYIVAKKVVVSSILQPRM

Query:  SSSQVCCSREGCSFKYVTAKRTFIV-------FIFSHVLQPRRSTSSSSCGACDHHLQ
        SSSQ+CC REG   KYV  ++  ++        I S++LQPRRS+S   C   D  L+
Subjt:  SSSQVCCSREGCSFKYVTAKRTFIV-------FIFSHVLQPRRSTSSSSCGACDHHLQ

A0A5D3C8K3 Ty3-gypsy retrotransposon protein1.8e-3757.32Show/hide
Query:  CIREGYHLKHVAAKNVFVSNMLQLRMSSSQICCNREGRRLKYVTSKKAIVSNMLQPRMLSSQVYCSRECRRLKYIVAKKVVVSSILQPRMSSSQVCCSRE
        C +E +HLK+VA + V + NMLQLR S SQ C +RE  RLKYV ++K IVSNMLQPR  SSQ+ C++E R LKY+ A+KVVVS++LQPR S SQ+CCSRE
Subjt:  CIREGYHLKHVAAKNVFVSNMLQLRMSSSQICCNREGRRLKYVTSKKAIVSNMLQPRMLSSQVYCSRECRRLKYIVAKKVVVSSILQPRMSSSQVCCSRE

Query:  GCSFKYVTAKR---TFIVFIFSHVLQPRRSTSSSSCGACDHHLQCSTT--IIIFNNVAQTIIIF
        G   KYV   R   +      +H L+  +S+SS S  A DHHLQC+ T  IIIFNN AQTIIIF
Subjt:  GCSFKYVTAKR---TFIVFIFSHVLQPRRSTSSSSCGACDHHLQCSTT--IIIFNNVAQTIIIF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATCGCCTCAAATATGTTGCATCCGAGAAGGCTATCATCTTAAACATGTTGCAGCCAAGAATGTCTTCGTCTCAAATATGTTGCAGCTGAGAATGTCGTCGTCTCA
AATATGTTGCAATCGAGAAGGTCGTCGCCTTAAATATGTTACATCCAAGAAGGCCATCGTCTCAAACATGTTACAACCGAGAATGTTGTCGTCTCAAGTATATTGCAGCC
GTGAATGTCGACGTCTCAAATATATTGTCGCCAAGAAGGTCGTCGTCTCAAGTATATTACAGCCAAGAATGTCATCGTCTCAAGTATGTTGCAGTCGAGAAGGTTGTAGT
TTCAAATATGTTACAGCCAAAAGGACGTTCATCGTCTTCATTTTCTCACATGTGTTGCAGCCGAGGCGATCAACATCTTCATCTTCATGCGGTGCATGCGATCATCATCT
TCAATGTAGCACGACGATCATCATCTTCAATAACGTAGCGCAGACGATCATCATCTTCATCTTTAATGCGGTATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCATCGCCTCAAATATGTTGCATCCGAGAAGGCTATCATCTTAAACATGTTGCAGCCAAGAATGTCTTCGTCTCAAATATGTTGCAGCTGAGAATGTCGTCGTCTCA
AATATGTTGCAATCGAGAAGGTCGTCGCCTTAAATATGTTACATCCAAGAAGGCCATCGTCTCAAACATGTTACAACCGAGAATGTTGTCGTCTCAAGTATATTGCAGCC
GTGAATGTCGACGTCTCAAATATATTGTCGCCAAGAAGGTCGTCGTCTCAAGTATATTACAGCCAAGAATGTCATCGTCTCAAGTATGTTGCAGTCGAGAAGGTTGTAGT
TTCAAATATGTTACAGCCAAAAGGACGTTCATCGTCTTCATTTTCTCACATGTGTTGCAGCCGAGGCGATCAACATCTTCATCTTCATGCGGTGCATGCGATCATCATCT
TCAATGTAGCACGACGATCATCATCTTCAATAACGTAGCGCAGACGATCATCATCTTCATCTTTAATGCGGTATAG
Protein sequenceShow/hide protein sequence
MSSPQICCIREGYHLKHVAAKNVFVSNMLQLRMSSSQICCNREGRRLKYVTSKKAIVSNMLQPRMLSSQVYCSRECRRLKYIVAKKVVVSSILQPRMSSSQVCCSREGCS
FKYVTAKRTFIVFIFSHVLQPRRSTSSSSCGACDHHLQCSTTIIIFNNVAQTIIIFIFNAV