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IVF0026549 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0026549
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRibonuclease H
Genome locationchr01:15781441..15782504
RNA-Seq ExpressionIVF0026549
SyntenyIVF0026549
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR021109 - Aspartic peptidase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043020.1 uncharacterized protein E6C27_scaffold75G00990 [Cucumis melo var. makuwa]1.91e-14676.98Show/hide
Query:  MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVRRRKGKAIEMA------------------------------
        MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIG ITRSGRCYTPDNLKDV KEDEVRRRKGKAIEMA                              
Subjt:  MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVRRRKGKAIEMA------------------------------

Query:  -----------------DKEIPPKGTGHTKTLHISVKCKDHHVARVLVDNGSSLNIISRSTLMKLLIDPSYLRPSTMVVTAFDGARREVIGDIDIPLKIG
                         D+EIPPKGTGHTK LHISVKCKDHHVARVLVDNGSSLNI+SRSTLMKL IDPSYLR S MVV AFDGARREVI DIDIPLKIG
Subjt:  -----------------DKEIPPKGTGHTKTLHISVKCKDHHVARVLVDNGSSLNIISRSTLMKLLIDPSYLRPSTMVVTAFDGARREVIGDIDIPLKIG

Query:  PSTFNVSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQRLKFSIEGGQAIVYGEDDMFVTKTSALPYVEAIEEALECSYRSFEIANATIFP
        PSTFNVS QVMDVNSSY+ LLG+PWIHSAGAVPS LHQRLKFS+EGGQAIVYGED+MFVTK S LPYVEA EEALECSYRSFEIANATIFP
Subjt:  PSTFNVSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQRLKFSIEGGQAIVYGEDDMFVTKTSALPYVEAIEEALECSYRSFEIANATIFP

KAA0046608.1 uncharacterized protein E6C27_scaffold114G001540 [Cucumis melo var. makuwa]1.48e-13963.74Show/hide
Query:  MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVRRRKGKAIEMA------------------------------
        MTVEIPGPFAYKDNH VPWKYECQFITDNVVSAT+GGITRSGRCYT DNLKDVSKEDEVRRRKGKAIEMA                              
Subjt:  MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVRRRKGKAIEMA------------------------------

Query:  ------------------------------------------------------------------------------DKEIPPKGTGHTKTLHISVKCK
                                                                                      D+EIPP+GTGHTK LHISVKCK
Subjt:  ------------------------------------------------------------------------------DKEIPPKGTGHTKTLHISVKCK

Query:  DHHVARVLVDNGSSLNIISRSTLMKLLIDPSYLRPSTMVVTAFDGARREVIGDIDIPLKIGPSTFNVSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQR
        DHHVARVLVDNGSSLNI+SRSTLMKL IDPSYLRPSTMVV AFDGARREVI DIDIPLKIGPSTFN+SFQVMD+NSSY+ LLG+PWIHS GAVPSSLHQR
Subjt:  DHHVARVLVDNGSSLNIISRSTLMKLLIDPSYLRPSTMVVTAFDGARREVIGDIDIPLKIGPSTFNVSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQR

Query:  LKFSIEGGQAIVYGEDDMFVTKTSALPYVEAIEEALECSYRSFEIANATIFPT
        LKFS+EGGQAIVYGE+DMFVTKTS LPYVEA EEALECSYRSFEIANATIFPT
Subjt:  LKFSIEGGQAIVYGEDDMFVTKTSALPYVEAIEEALECSYRSFEIANATIFPT

KAA0049671.1 uncharacterized protein E6C27_scaffold76G00060 [Cucumis melo var. makuwa]1.45e-14484.13Show/hide
Query:  MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVRRRKGKAIEMA------------------------------
        MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVRRRKGKAIEMA                              
Subjt:  MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVRRRKGKAIEMA------------------------------

Query:  ------------DKEIPPKGTGHTKTLHISVKCKDHHVARVLVDNGSSLNIISRSTLMKLLIDPSYLRPSTMVVTAFDGARREVIGDIDIPLKIGPSTFN
                    +KEIPPKGTGHTKTLHISVKCKDHHVARVLVDNGSSLNIISRSTLMKLLIDPSYLRPSTMVVTAFDGARREVIGDIDIPLKIGPSTFN
Subjt:  ------------DKEIPPKGTGHTKTLHISVKCKDHHVARVLVDNGSSLNIISRSTLMKLLIDPSYLRPSTMVVTAFDGARREVIGDIDIPLKIGPSTFN

Query:  VSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQRLKFSIEGGQAIVYGEDDMFVTKTSALPYVEAIEEALE
        VSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQRLKFSIEGGQAIVYGEDDMFVTKTSALPYVEAIEEALE
Subjt:  VSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQRLKFSIEGGQAIVYGEDDMFVTKTSALPYVEAIEEALE

KAA0061241.1 uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa]1.02e-13764.59Show/hide
Query:  MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVRRRKGKAIEMA------------------------------
        MTVEIPGPFAYKDNH VPWKYECQFITDNVVSAT+GGITRSGRCYTPDNLKDVSKEDEVRRRKGKAIEMA                              
Subjt:  MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVRRRKGKAIEMA------------------------------

Query:  ------------------------------------------------------------------------------DKEIPPKGTGHTKTLHISVKCK
                                                                                      D+EIPP+GTGHTK LHISVKCK
Subjt:  ------------------------------------------------------------------------------DKEIPPKGTGHTKTLHISVKCK

Query:  DHHVARVLVDNGSSLNIISRSTLMKLLIDPSYLRPSTMVVTAFDGARREVIGDIDIPLKIGPSTFNVSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQR
        DHHVARVLVDNGSSLNI+SRSTLMKL IDPSYLRPSTMVV AFDGARREVIGDIDIPLKIGPSTFNVSFQVMD+NSSY+ LLG+PWIHSAGAVPSSLHQR
Subjt:  DHHVARVLVDNGSSLNIISRSTLMKLLIDPSYLRPSTMVVTAFDGARREVIGDIDIPLKIGPSTFNVSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQR

Query:  LKFSIEGGQAIVYGEDDMFVTKTSALPYVEAIEEALECSYRSFEIANATIFPT
        LKFS+E GQAIVYGE+DMFVTKTS LPYVEA EEALECSYRSFEIANATIFPT
Subjt:  LKFSIEGGQAIVYGEDDMFVTKTSALPYVEAIEEALECSYRSFEIANATIFPT

TYK06500.1 uncharacterized protein E5676_scaffold70G00280 [Cucumis melo var. makuwa]8.37e-14588.48Show/hide
Query:  TVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVRRRKGKAIEMADKEIPPKGTGHTKTLHISVKCKDHHVARVLV
        ++E   PFAYKDNHVVPWKYECQFITDNVVSATIG IT SGRCYTPDNLKDVSKEDEVRRRKGKAIEMAD+EIPP+GTGHTK L+ISVKCKDHHVARVLV
Subjt:  TVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVRRRKGKAIEMADKEIPPKGTGHTKTLHISVKCKDHHVARVLV

Query:  DNGSSLNIISRSTLMKLLIDPSYLRPSTMVVTAFDGARREVIGDIDIPLKIGPSTFNVSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQRLKFSIEGGQ
        DNGSSLNI+SRSTLMKL IDP YLRPS MVV AFD ARREVIGDIDIPLKIGPSTFNVS QV+DVNSSY+ LLG+PWIHSAG VPS LHQRLKFS+EGGQ
Subjt:  DNGSSLNIISRSTLMKLLIDPSYLRPSTMVVTAFDGARREVIGDIDIPLKIGPSTFNVSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQRLKFSIEGGQ

Query:  AIVYGEDDMFVTKTSALPYVEAIEEALECSYRSFEIANATIFP
        AIVYGED+MFVTKTS LPYVEA EEALECSYRSFEIANATIFP
Subjt:  AIVYGEDDMFVTKTSALPYVEAIEEALECSYRSFEIANATIFP

TrEMBL top hitse value%identityAlignment
A0A5A7TI68 Uncharacterized protein1.1e-11776.98Show/hide
Query:  MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVRRRKGKAIEMA------------------------------
        MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIG ITRSGRCYTPDNLKDV KEDEVRRRKGKAIEMA                              
Subjt:  MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVRRRKGKAIEMA------------------------------

Query:  -----------------DKEIPPKGTGHTKTLHISVKCKDHHVARVLVDNGSSLNIISRSTLMKLLIDPSYLRPSTMVVTAFDGARREVIGDIDIPLKIG
                         D+EIPPKGTGHTK LHISVKCKDHHVARVLVDNGSSLNI+SRSTLMKL IDPSYLR S MVV AFDGARREVI DIDIPLKIG
Subjt:  -----------------DKEIPPKGTGHTKTLHISVKCKDHHVARVLVDNGSSLNIISRSTLMKLLIDPSYLRPSTMVVTAFDGARREVIGDIDIPLKIG

Query:  PSTFNVSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQRLKFSIEGGQAIVYGEDDMFVTKTSALPYVEAIEEALECSYRSFEIANATIFP
        PSTFNVS QVMDVNSSY+ LLG+PWIHSAGAVPS LHQRLKFS+EGGQAIVYGED+MFVTK S LPYVEA EEALECSYRSFEIANATIFP
Subjt:  PSTFNVSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQRLKFSIEGGQAIVYGEDDMFVTKTSALPYVEAIEEALECSYRSFEIANATIFP

A0A5A7TUT4 Uncharacterized protein7.5e-11463.74Show/hide
Query:  MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVRRRKGKAIEMA------------------------------
        MTVEIPGPFAYKDNH VPWKYECQFITDNVVSAT+GGITRSGRCYT DNLKDVSKEDEVRRRKGKAIEMA                              
Subjt:  MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVRRRKGKAIEMA------------------------------

Query:  ------------------------------------------------------------------------------DKEIPPKGTGHTKTLHISVKCK
                                                                                      D+EIPP+GTGHTK LHISVKCK
Subjt:  ------------------------------------------------------------------------------DKEIPPKGTGHTKTLHISVKCK

Query:  DHHVARVLVDNGSSLNIISRSTLMKLLIDPSYLRPSTMVVTAFDGARREVIGDIDIPLKIGPSTFNVSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQR
        DHHVARVLVDNGSSLNI+SRSTLMKL IDPSYLRPSTMVV AFDGARREVI DIDIPLKIGPSTFN+SFQVMD+NSSY+ LLG+PWIHS GAVPSSLHQR
Subjt:  DHHVARVLVDNGSSLNIISRSTLMKLLIDPSYLRPSTMVVTAFDGARREVIGDIDIPLKIGPSTFNVSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQR

Query:  LKFSIEGGQAIVYGEDDMFVTKTSALPYVEAIEEALECSYRSFEIANATIFPT
        LKFS+EGGQAIVYGE+DMFVTKTS LPYVEA EEALECSYRSFEIANATIFPT
Subjt:  LKFSIEGGQAIVYGEDDMFVTKTSALPYVEAIEEALECSYRSFEIANATIFPT

A0A5A7U7X5 Ribonuclease H2.2e-12184.13Show/hide
Query:  MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVRRRKGKAIEMA------------------------------
        MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVRRRKGKAIEMA                              
Subjt:  MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVRRRKGKAIEMA------------------------------

Query:  ------------DKEIPPKGTGHTKTLHISVKCKDHHVARVLVDNGSSLNIISRSTLMKLLIDPSYLRPSTMVVTAFDGARREVIGDIDIPLKIGPSTFN
                    +KEIPPKGTGHTKTLHISVKCKDHHVARVLVDNGSSLNIISRSTLMKLLIDPSYLRPSTMVVTAFDGARREVIGDIDIPLKIGPSTFN
Subjt:  ------------DKEIPPKGTGHTKTLHISVKCKDHHVARVLVDNGSSLNIISRSTLMKLLIDPSYLRPSTMVVTAFDGARREVIGDIDIPLKIGPSTFN

Query:  VSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQRLKFSIEGGQAIVYGEDDMFVTKTSALPYVEAIEEALE
        VSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQRLKFSIEGGQAIVYGEDDMFVTKTSALPYVEAIEEALE
Subjt:  VSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQRLKFSIEGGQAIVYGEDDMFVTKTSALPYVEAIEEALE

A0A5A7V681 Retrotrans_gag domain-containing protein1.8e-11564.59Show/hide
Query:  MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVRRRKGKAIEMA------------------------------
        MTVEIPGPFAYKDNH VPWKYECQFITDNVVSAT+GGITRSGRCYTPDNLKDVSKEDEVRRRKGKAIEMA                              
Subjt:  MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVRRRKGKAIEMA------------------------------

Query:  ------------------------------------------------------------------------------DKEIPPKGTGHTKTLHISVKCK
                                                                                      D+EIPP+GTGHTK LHISVKCK
Subjt:  ------------------------------------------------------------------------------DKEIPPKGTGHTKTLHISVKCK

Query:  DHHVARVLVDNGSSLNIISRSTLMKLLIDPSYLRPSTMVVTAFDGARREVIGDIDIPLKIGPSTFNVSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQR
        DHHVARVLVDNGSSLNI+SRSTLMKL IDPSYLRPSTMVV AFDGARREVIGDIDIPLKIGPSTFNVSFQVMD+NSSY+ LLG+PWIHSAGAVPSSLHQR
Subjt:  DHHVARVLVDNGSSLNIISRSTLMKLLIDPSYLRPSTMVVTAFDGARREVIGDIDIPLKIGPSTFNVSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQR

Query:  LKFSIEGGQAIVYGEDDMFVTKTSALPYVEAIEEALECSYRSFEIANATIFPT
        LKFS+E GQAIVYGE+DMFVTKTS LPYVEA EEALECSYRSFEIANATIFPT
Subjt:  LKFSIEGGQAIVYGEDDMFVTKTSALPYVEAIEEALECSYRSFEIANATIFPT

A0A5D3C587 Retrotrans_gag domain-containing protein2.7e-11990.3Show/hide
Query:  PFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVRRRKGKAIEMADKEIPPKGTGHTKTLHISVKCKDHHVARVLVDNGSSL
        PFAYKDNHVVPWKYECQFITDNVVSATIG IT SGRCYTPDNLKDVSKEDEVRRRKGKAIEMAD+EIPP+GTGHTK L+ISVKCKDHHVARVLVDNGSSL
Subjt:  PFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVRRRKGKAIEMADKEIPPKGTGHTKTLHISVKCKDHHVARVLVDNGSSL

Query:  NIISRSTLMKLLIDPSYLRPSTMVVTAFDGARREVIGDIDIPLKIGPSTFNVSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQRLKFSIEGGQAIVYGE
        NI+SRSTLMKL IDP YLRPS MVV AFD ARREVIGDIDIPLKIGPSTFNVS QV+DVNSSY+ LLG+PWIHSAG VPS LHQRLKFS+EGGQAIVYGE
Subjt:  NIISRSTLMKLLIDPSYLRPSTMVVTAFDGARREVIGDIDIPLKIGPSTFNVSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQRLKFSIEGGQAIVYGE

Query:  DDMFVTKTSALPYVEAIEEALECSYRSFEIANATIFP
        D+MFVTKTS LPYVEA EEALECSYRSFEIANATIFP
Subjt:  DDMFVTKTSALPYVEAIEEALECSYRSFEIANATIFP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGTTGAAATACCAGGTCCTTTTGCTTATAAGGATAACCATGTCGTTCCATGGAAGTATGAATGTCAGTTCATCACGGACAATGTCGTTTCTGCAACAATCGGAGG
AATAACTCGTAGTGGAAGGTGTTATACACCAGATAATTTAAAAGATGTCTCAAAAGAGGATGAAGTTCGACGACGTAAAGGCAAAGCTATAGAAATGGCAGATAAAGAAA
TTCCCCCTAAAGGTACTGGACATACTAAGACATTGCACATATCCGTGAAGTGTAAGGACCATCATGTGGCGAGGGTCCTGGTAGATAATGGTTCATCTTTAAATATAATA
TCGAGATCCACGTTGATGAAACTCCTCATAGATCCATCGTACCTAAGACCAAGTACTATGGTTGTAACAGCCTTTGACGGTGCACGTAGAGAAGTAATCGGGGATATAGA
TATCCCATTAAAAATTGGGCCTTCCACTTTCAACGTTTCATTCCAAGTGATGGATGTAAATTCCTCATACAATTTTCTACTGGGACAACCTTGGATTCATTCAGCAGGGG
CAGTCCCATCTTCACTGCACCAAAGGTTGAAATTTAGTATAGAAGGTGGTCAAGCTATTGTCTATGGAGAAGACGACATGTTTGTAACGAAAACATCGGCACTTCCTTAT
GTTGAAGCAATAGAGGAAGCTCTAGAATGTTCTTATAGATCGTTTGAAATTGCTAATGCTACTATCTTTCCAACATAA
mRNA sequenceShow/hide mRNA sequence
ATGACAGTTGAAATACCAGGTCCTTTTGCTTATAAGGATAACCATGTCGTTCCATGGAAGTATGAATGTCAGTTCATCACGGACAATGTCGTTTCTGCAACAATCGGAGG
AATAACTCGTAGTGGAAGGTGTTATACACCAGATAATTTAAAAGATGTCTCAAAAGAGGATGAAGTTCGACGACGTAAAGGCAAAGCTATAGAAATGGCAGATAAAGAAA
TTCCCCCTAAAGGTACTGGACATACTAAGACATTGCACATATCCGTGAAGTGTAAGGACCATCATGTGGCGAGGGTCCTGGTAGATAATGGTTCATCTTTAAATATAATA
TCGAGATCCACGTTGATGAAACTCCTCATAGATCCATCGTACCTAAGACCAAGTACTATGGTTGTAACAGCCTTTGACGGTGCACGTAGAGAAGTAATCGGGGATATAGA
TATCCCATTAAAAATTGGGCCTTCCACTTTCAACGTTTCATTCCAAGTGATGGATGTAAATTCCTCATACAATTTTCTACTGGGACAACCTTGGATTCATTCAGCAGGGG
CAGTCCCATCTTCACTGCACCAAAGGTTGAAATTTAGTATAGAAGGTGGTCAAGCTATTGTCTATGGAGAAGACGACATGTTTGTAACGAAAACATCGGCACTTCCTTAT
GTTGAAGCAATAGAGGAAGCTCTAGAATGTTCTTATAGATCGTTTGAAATTGCTAATGCTACTATCTTTCCAACATAA
Protein sequenceShow/hide protein sequence
MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVRRRKGKAIEMADKEIPPKGTGHTKTLHISVKCKDHHVARVLVDNGSSLNII
SRSTLMKLLIDPSYLRPSTMVVTAFDGARREVIGDIDIPLKIGPSTFNVSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQRLKFSIEGGQAIVYGEDDMFVTKTSALPY
VEAIEEALECSYRSFEIANATIFPT