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IVF0026572 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0026572
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr10:15672317..15672721
RNA-Seq ExpressionIVF0026572
SyntenyIVF0026572
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035946.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.22e-81100Show/hide
Query:  MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGRCLKYVVAEKVVVSNMFSREGRRLKYVVAEKVIVSNMLQSR
        MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGRCLKYVVAEKVVVSNMFSREGRRLKYVVAEKVIVSNMLQSR
Subjt:  MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGRCLKYVVAEKVVVSNMFSREGRRLKYVVAEKVIVSNMLQSR

Query:  RSTSSSSCGASNHHLRRARSSSSMKNDAGDHHLQ
        RSTSSSSCGASNHHLRRARSSSSMKNDAGDHHLQ
Subjt:  RSTSSSSCGASNHHLRRARSSSSMKNDAGDHHLQ

KAA0059640.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.66e-3156.55Show/hide
Query:  MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGRCLKYVVAEKVVVSNMF-----------SREGRRLKYVVAE
        MLQ RRS SQ C S+++            LK+V  E+VI SNML PRR SSQICC++E R LKYV AEKVVVSNM            SREGRRLKYV   
Subjt:  MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGRCLKYVVAEKVVVSNMF-----------SREGRRLKYVVAE

Query:  KVIVSNMLQSRRSTSSSSCGASNHHLRRARSSSSMKNDAGDHHLQ
                   RST SSSCGASNHHLR A+SSSSM N+A DHHLQ
Subjt:  KVIVSNMLQSRRSTSSSSCGASNHHLRRARSSSSMKNDAGDHHLQ

KAA0060518.1 hypothetical protein E6C27_scaffold22G003700 [Cucumis melo var. makuwa]2.72e-3351.55Show/hide
Query:  MLQPR---RSSSQICCSK-----------KIFISNRLH-----------QEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGRCLKYVVAEKVVVSNM
        +LQPR    SSS +CCS+           K+  SN LH           ++   LK+VT E+VI SNML  RR SSQICCSREGR LKYV  EKVVVSNM
Subjt:  MLQPR---RSSSQICCSK-----------KIFISNRLH-----------QEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGRCLKYVVAEKVVVSNM

Query:  F--SREGRRLKYVVAEKVIVSNMLQSRRSTSSSSCGASNHHLRRARSSSSMKNDAGDHHLQ
           S+EGR LKYV+AEKV VSNMLQ RRS+S   C   N HL    + + +   A DHHLQ
Subjt:  F--SREGRRLKYVVAEKVIVSNMLQSRRSTSSSSCGASNHHLRRARSSSSMKNDAGDHHLQ

KAA0066592.1 hypothetical protein E6C27_scaffold25G001670 [Cucumis melo var. makuwa]1.14e-2857.98Show/hide
Query:  MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGRCLKYVVAEKVVVSNMF-----------SREGRRLKYVVAE
        ML  RRSSSQIC            QE  HLK+V  E+V+ SNML  RR S QICCSREGR LKYVV EK+VVSNM            S+E RRLKYV  E
Subjt:  MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGRCLKYVVAEKVVVSNMF-----------SREGRRLKYVVAE

Query:  KVIVSNMLQSRRSTSSSSC
        KVIVSNMLQSR S+S   C
Subjt:  KVIVSNMLQSRRSTSSSSC

TYK08171.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.66e-3156.55Show/hide
Query:  MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGRCLKYVVAEKVVVSNMF-----------SREGRRLKYVVAE
        MLQ RRS SQ C S+++            LK+V  E+VI SNML PRR SSQICC++E R LKYV AEKVVVSNM            SREGRRLKYV   
Subjt:  MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGRCLKYVVAEKVVVSNMF-----------SREGRRLKYVVAE

Query:  KVIVSNMLQSRRSTSSSSCGASNHHLRRARSSSSMKNDAGDHHLQ
                   RST SSSCGASNHHLR A+SSSSM N+A DHHLQ
Subjt:  KVIVSNMLQSRRSTSSSSCGASNHHLRRARSSSSMKNDAGDHHLQ

TrEMBL top hitse value%identityAlignment
A0A5A7T154 Ty3-gypsy retrotransposon protein1.4e-66100Show/hide
Query:  MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGRCLKYVVAEKVVVSNMFSREGRRLKYVVAEKVIVSNMLQSR
        MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGRCLKYVVAEKVVVSNMFSREGRRLKYVVAEKVIVSNMLQSR
Subjt:  MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGRCLKYVVAEKVVVSNMFSREGRRLKYVVAEKVIVSNMLQSR

Query:  RSTSSSSCGASNHHLRRARSSSSMKNDAGDHHLQ
        RSTSSSSCGASNHHLRRARSSSSMKNDAGDHHLQ
Subjt:  RSTSSSSCGASNHHLRRARSSSSMKNDAGDHHLQ

A0A5A7UWX8 Ty3-gypsy retrotransposon protein7.2e-2656.55Show/hide
Query:  MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGRCLKYVVAEKVVVSNMF-----------SREGRRLKYVVAE
        MLQ RRS SQ C S+++            LK+V  E+VI SNML PRR SSQICC++E R LKYV AEKVVVSNM            SREGRRLKYV   
Subjt:  MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGRCLKYVVAEKVVVSNMF-----------SREGRRLKYVVAE

Query:  KVIVSNMLQSRRSTSSSSCGASNHHLRRARSSSSMKNDAGDHHLQ
                   RST SSSCGASNHHLR A+SSSSM N+A DHHLQ
Subjt:  KVIVSNMLQSRRSTSSSSCGASNHHLRRARSSSSMKNDAGDHHLQ

A0A5A7VE10 Uncharacterized protein1.8e-2155.12Show/hide
Query:  MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGRCLKYVVAEKVVVSNMF-----------SREGRRLKYVVAE
        ML  RRSSSQIC            QE  HLK+V  E+V+ SNML  RR S QICCSREGR LKYVV EK+VVSNM            S+E RRLKYV  E
Subjt:  MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGRCLKYVVAEKVVVSNMF-----------SREGRRLKYVVAE

Query:  KVIVSNMLQSRRSTSSSSCGASNHHLR
        KVIVSNMLQSR S+S   C      L+
Subjt:  KVIVSNMLQSRRSTSSSSCGASNHHLR

A0A5D3BNW3 Uncharacterized protein9.4e-2651.55Show/hide
Query:  MLQPR---RSSSQICCSK-----------KIFISNRLH-----------QEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGRCLKYVVAEKVVVSNM
        +LQPR    SSS +CCS+           K+  SN LH           ++   LK+VT E+VI SNML  RR SSQICCSREGR LKYV  EKVVVSNM
Subjt:  MLQPR---RSSSQICCSK-----------KIFISNRLH-----------QEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGRCLKYVVAEKVVVSNM

Query:  F--SREGRRLKYVVAEKVIVSNMLQSRRSTSSSSCGASNHHLRRARSSSSMKNDAGDHHLQ
           S+EGR LKYV+AEKV VSNMLQ RRS+S   C   N HL    + + +   A DHHLQ
Subjt:  F--SREGRRLKYVVAEKVIVSNMLQSRRSTSSSSCGASNHHLRRARSSSSMKNDAGDHHLQ

A0A5D3C8K3 Ty3-gypsy retrotransposon protein7.2e-2656.55Show/hide
Query:  MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGRCLKYVVAEKVVVSNMF-----------SREGRRLKYVVAE
        MLQ RRS SQ C S+++            LK+V  E+VI SNML PRR SSQICC++E R LKYV AEKVVVSNM            SREGRRLKYV   
Subjt:  MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGRCLKYVVAEKVVVSNMF-----------SREGRRLKYVVAE

Query:  KVIVSNMLQSRRSTSSSSCGASNHHLRRARSSSSMKNDAGDHHLQ
                   RST SSSCGASNHHLR A+SSSSM N+A DHHLQ
Subjt:  KVIVSNMLQSRRSTSSSSCGASNHHLRRARSSSSMKNDAGDHHLQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCAGCCGAGAAGATCGTCATCTCAAATATGTTGCAGTAAGAAGATCTTCATCTCCAATAGGTTGCATCAAGAGGATGATCATCTCAAACATGTTACAGCCGAGGA
GGTCATTGCCTCAAATATGTTGCATCCGAGAAGACCATCGTCTCAAATATGTTGTAGCCGAGAAGGTCGATGTCTCAAATATGTTGTAGCTGAGAAGGTCGTCGTCTCAA
ATATGTTTAGCCGAGAAGGTCGTCGTCTCAAATATGTTGTAGCCGAGAAGGTCATCGTCTCAAATATGTTGCAATCGAGGCGATCAACATCTTCATCTTCATGTGGCGCA
AGCAATCATCATCTTCGGCGCGCGCGATCATCATCTTCAATGAAGAACGACGCAGGCGATCATCATCTTCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGCAGCCGAGAAGATCGTCATCTCAAATATGTTGCAGTAAGAAGATCTTCATCTCCAATAGGTTGCATCAAGAGGATGATCATCTCAAACATGTTACAGCCGAGGA
GGTCATTGCCTCAAATATGTTGCATCCGAGAAGACCATCGTCTCAAATATGTTGTAGCCGAGAAGGTCGATGTCTCAAATATGTTGTAGCTGAGAAGGTCGTCGTCTCAA
ATATGTTTAGCCGAGAAGGTCGTCGTCTCAAATATGTTGTAGCCGAGAAGGTCATCGTCTCAAATATGTTGCAATCGAGGCGATCAACATCTTCATCTTCATGTGGCGCA
AGCAATCATCATCTTCGGCGCGCGCGATCATCATCTTCAATGAAGAACGACGCAGGCGATCATCATCTTCAATAA
Protein sequenceShow/hide protein sequence
MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGRCLKYVVAEKVVVSNMFSREGRRLKYVVAEKVIVSNMLQSRRSTSSSSCGA
SNHHLRRARSSSSMKNDAGDHHLQ